ID: uc010tkd.1_intron_0_0_chr13_114239046_f.3p
GENE: (1)
chr13:114239889-114240138+


(6)
B-CELL 		(2)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
TESTES

Sense strand
CCGCAGGGGGCATTTCCGTCTGGCGAGGCGACTGAAAATCCTGAGTGTGGGAGTCGGTTTGGCCAGCTCCGCTCTCAGGATGGAGGGTGCCTTTGGGAAGGAAGGTCCGCGTTTCCTTTGAGATGTGTTATTTTTTAAACTTCGTTTTTCATTCTTACTTATTTCTTGTTTTTCCTTACTTTTTTTTTTTTTTTTACCAGAAAAATCATTTTTCTTCTCTGGGAAGGTGAACATTTGTAGCATTGATTTC
.....................................................................................((((.....((((((((((((.((((((((....)))))))).........((((...........................))))......)))))))))))).....))))....................................................
.....................................................................................86................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR029129(GSM416758)
SW480. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTATG....................................................23241.000.00121.00105.0013.002.00--------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACGG...................................................2211.000.007.003.00--1.00-------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTAAG......................................................2711.000.004.004.002.001.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTAAG....................................................2910.000.004.003.002.00--1.00------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTAAG.......................................................268.000.001.003.003.001.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTACTTG..................................................268.000.004.002.002.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCG...................................................228.000.002.004.00-1.001.00-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATTAG..................................................236.000.001.003.00---1.001.00-----------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTATG.....................................................236.000.002.001.001.002.00--------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTAAG......................................................266.000.001.00-3.002.00--------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTAAG........................................................246.000.003.00-2.001.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTCTTG.......................................................215.000.00-1.002.002.00--------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTTTAAG...................................................295.000.002.001.002.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACAAAG.................................................245.000.002.002.001.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATAAG..................................................235.000.004.00-1.00---------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTAAAG...................................................255.000.003.002.00----------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTATTG...................................................244.000.002.002.00----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTAAG.........................................................234.000.002.00--2.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTATTTG..................................................264.000.002.001.001.00---------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTATTAA..................................................264.000.003.00-1.00---------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTAAATG..................................................264.000.00-2.002.00---------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTTTTTAAG...................................................284.000.002.001.00-1.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTAAG.........................................................244.000.00-3.00-1.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTATG....................................................244.000.00-2.00-2.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTAAG........................................................254.000.001.002.001.00---------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTTAAG......................................................254.000.001.001.002.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCTAG................................................254.000.002.00-1.001.00--------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTAAG.....................................................273.000.001.001.001.00---------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTTTTTACCAG..................................................3213.003.00-2.001.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATCCG..................................................233.000.001.002.00----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTAAAAG..................................................263.000.001.00--2.00--------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTAAG........................................................233.000.001.00-1.001.00--------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCG..................................................233.000.001.001.001.00---------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTTAAG...................................................3042.500.250.500.750.750.250.25-------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACG....................................................222.000.00--1.00-1.00-------------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTTTAAT...................................................262.000.001.001.00----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTCTTT....................................................242.000.00--1.001.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTCTAG.......................................................212.000.00--1.00-1.00-------------------------------
................................................................................................................................................TTTTTCATTCTTACTTATTTCTTGTTTTCCC...........................................................................312.000.00------2.00-----------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTAA............................................................212.000.001.00-1.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATTCA..................................................232.000.001.001.00----------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACG....................................................232.000.00--1.00--1.00------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTAACC....................................................242.000.002.00-----------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTAG......................................................242.000.001.001.00----------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTAAG.......................................................242.000.001.001.00----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTAAG..........................................................232.000.001.001.00----------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTATTAG..................................................242.000.00---2.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTCCG........................................................202.000.00---2.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTCATT......................................................222.000.00---1.00-1.00------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTAAAG....................................................282.000.001.00--1.00--------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACACAG.................................................252.000.00--1.001.00--------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTTTC....................................................262.000.00---1.001.00-------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTAAT.......................................................252.000.001.001.00----------------------------------
....................TGGCGAGGCGACTGAAAATCCTGAGTGTGGGAG.....................................................................................................................................................................................................3312.002.00----2.00-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATCTG..................................................232.000.001.00---1.00-------------------------------
........................................CTGAGTGTGGGAGTCGGTT...............................................................................................................................................................................................1912.002.00--------2.00---------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTCAAG.......................................................262.000.00---2.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTCAAG.....................................................282.000.00--1.001.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTATTT...................................................252.000.001.001.00----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTAAG.....................................................2871.710.290.710.140.290.57--------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTCAG.......................................................231.000.00---1.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTAA.......................................................261.000.001.00-----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTCTCT.......................................................211.000.00-1.00----------------------------------
....................................................................................................................................................................CTTGTTTTTCCTTACTGAT...................................................................191.000.00----------------1.00-------------------
...............................................................................................................................................................................................................................AAGGTGAACATTTGTAGCACTG.....221.000.00-------1.00----------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTACCGG..................................................261.000.001.00-----------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATGGT..................................................231.000.00----1.00-------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTGT..........................................................201.000.00----1.00-------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTCTAG....................................................241.000.00--1.00---------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTCCTT........................................................221.000.00-----1.00------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTGT.......................................................231.000.00----1.00-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACAACA.................................................241.000.00--1.00---------------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTACCGGCG................................................231.000.00----1.00-------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTATG.....................................................271.000.00---1.00--------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTACT........................................................261.000.00----1.00-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCCAG................................................251.000.00--1.00---------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTATT......................................................261.000.00-1.00----------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACTCT..................................................251.000.001.00-----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTATCAA..................................................261.000.00-1.00----------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTGTC....................................................261.000.00----1.00-------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTCAAG............................................................211.000.00---1.00--------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTATTTG..................................................251.000.00--1.00---------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACGG...................................................241.000.001.00-----------------------------------
.....................................................................................................................................................................................................................CTTCTCTGGGAAGGTGAACATT...............2231.001.00---------1.00--------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTCTTT....................................................261.000.001.00-----------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTATAT...................................................241.000.00--1.00---------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTAAG............................................................211.000.00--1.00---------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACCATTTG...............................................281.000.00--1.00---------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTAA.........................................................231.000.00---1.00--------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTTTAA.......................................................271.000.00-----1.00------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTAAG...........................................................221.000.001.00-----------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCAC.................................................241.000.00------1.00-----------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTATGG...................................................231.000.001.00-----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTAAAG......................................................261.000.00---1.00--------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTTTAAG.....................................................261.000.001.00-----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTAAT......................................................271.000.001.00-----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTAAG.......................................................251.000.00--1.00---------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTTTTTACTTT..................................................321.000.00--1.00---------------------------------
..........................GGCGACTGAAAATCCTG...............................................................................................................................................................................................................1711.001.00------------1.00-----------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTTTTG......................................................251.000.00---1.00--------------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTTTAAA...................................................261.000.00---1.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTAA........................................................251.000.00-1.00----------------------------------
.....................................ATCCTGAGTGTGGGAGTCGGT................................................................................................................................................................................................2111.001.00---------------1.00--------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTCCTT...................................................271.000.00-1.00----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTCCGG....................................................241.000.001.00-----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTACATG..................................................261.000.00-----1.00------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTATCG...................................................221.000.00-----1.00------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTGAG.........................................................221.000.00------1.00-----------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTTTAAC...................................................261.000.00--1.00---------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACTCTT.................................................251.000.001.00-----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTTTTAC...................................................291.000.00-1.00----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTTCAAG...................................................291.000.00--1.00---------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACCCAG.................................................261.000.00-1.00----------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCGG.................................................241.000.00----1.00-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCGGCT................................................251.000.00----1.00-------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTACG....................................................241.000.00---1.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTATTG.............................................................201.000.00-------1.00----------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTAGG.....................................................271.000.00-1.00----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTACAT....................................................241.000.00---1.00--------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTCTTG........................................................221.000.00---1.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTATAAT..................................................261.000.00---1.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTACCCAAG................................................281.000.00-1.00----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTAC.............................................................201.000.00---1.00--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTAA...........................................................221.000.001.00-----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTATG......................................................271.000.00--1.00---------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACATAG.................................................261.000.00---1.00--------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTATTGT..................................................241.000.00---1.00--------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTAAAG...................................................271.000.001.00-----------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTTTTTACCAA..................................................321.000.00--1.00---------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTACCAT..................................................311.000.001.00-----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTAAG............................................................201.000.00--1.00---------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTAAG...........................................................191.000.00--1.00---------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTACC.........................................................251.000.00------1.00-----------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTCTTA....................................................241.000.00--1.00---------------------------------
...................................AAATCCTGAGTGTGGGAGTCGGTC...............................................................................................................................................................................................241.000.00----1.00-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCATATG...............................................261.000.001.00-----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTCTAG......................................................221.000.001.00-----------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACAGTC.................................................241.000.00----1.00-------------------------------
..............................................................................................................................................................TTATTTCTTGTTTTTCCCAG........................................................................201.000.00-------1.00----------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTTTAG....................................................251.000.00--1.00---------------------------------
..........................................................................................CTTTGGGAAGGAAGGTGT..............................................................................................................................................181.000.00--------------------1.00---------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACAAAG.................................................251.000.001.00-----------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTTTTTTCC...................................................281.000.00---1.00--------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTAATG...................................................251.000.001.00-----------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTCAAG......................................................261.000.00--1.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCGGGG................................................251.000.00----1.00-------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTAAGG.......................................................251.000.00--1.00---------------------------------
.................................GAAAATCCTGAGTGTGGGAGTCGGTT...............................................................................................................................................................................................2611.001.00---------1.00--------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTTTTTCCTG...................................................291.000.00---1.00--------------------------------
.......GGGCATTTCCGTCTGGCGAGGCGACTG........................................................................................................................................................................................................................2711.001.00-------------1.00----------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTACC........................................................261.000.001.00-----------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTGT......................................................241.000.00----1.00-------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTTTTCAAG.......................................................251.000.00----1.00-------------------------------
..............TCCGTCTGGCGAGGCGAC..........................................................................................................................................................................................................................1811.001.00--------------1.00---------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACAATT.................................................251.000.001.00-----------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTAAAG......................................................241.000.001.00-----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTTACCAG..................................................2611.001.001.00-----------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTCTCC...................................................271.000.00----1.00-------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTATCTG..................................................241.000.001.00-----------------------------------
..........................GGCGACTGAAAATCCTGAGTGTGGGAGT....................................................................................................................................................................................................2811.001.00-----------1.00------------------------
...................................................................................................................................................................TCTTGTTTTTCCTTACTTTTTTTTTTTTC..........................................................291.000.00----1.00-------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACAAGG.................................................251.000.00---1.00--------------------------------
....................................................................................................................................................................................................................TCTTCTCTGGGAAGGTGAACACTTG.............251.000.00------1.00-----------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTCCG.....................................................231.000.00--1.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCTC.................................................241.000.00----1.00-------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTATTT...................................................271.000.001.00-----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTAAT....................................................291.000.00--1.00---------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTACG.....................................................231.000.00--1.00---------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCATAAG...............................................261.000.00--1.00---------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTAATG..........................................................231.000.00--1.00---------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTATCAA..................................................251.000.001.00-----------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTTGCC.......................................................2731.000.331.00-----------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACCATC.................................................251.000.00----1.00-------------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTAATT....................................................251.000.00---1.00--------------------------------
..........................................................................................................................................................................TTTCCTTACTTTTTTTTTAAG...........................................................211.000.00-1.00----------------------------------
.......................................CCTGAGTGTGGGAGTCGGTTT..............................................................................................................................................................................................2111.001.00-----------------1.00------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCCGG................................................251.000.00----1.00-------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTCTAA...........................................................221.000.00--1.00---------------------------------
.................................................................................................................................................TTTTCATTCTTACTTATTTCTTG..................................................................................2311.001.00---1.00--------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTTTC........................................................261.000.00---1.00--------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACAGAC.................................................241.000.00----1.00-------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTGTC.....................................................251.000.00----1.00-------------------------------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTC..........................................................241.000.00--1.00---------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTTTTTTTTAAT....................................................271.000.00---1.00--------------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTCAGG.....................................................241.000.00---1.00--------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTATTTA..................................................251.000.00-----1.00------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCCAT.................................................241.000.001.00-----------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACAAG..................................................251.000.00---1.00--------------------------------
...........................................................................................................................................................................TTCCTTACTTTTTTTTTCGGC..........................................................211.000.00----1.00-------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTCCAG....................................................241.000.001.00-----------------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTTTTACGG....................................................241.000.00---1.00--------------------------------
...................................................................................................................................................TTCATTCTTACTTATTTCAT...................................................................................201.000.00-----1.00------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTCTTC.......................................................231.000.00--1.00---------------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTTTAT....................................................251.000.00---1.00--------------------------------
...............................................................................................................................................................................TTACTTTTTTTTTTTTTTTTACTC...................................................241.000.00----1.00-------------------------------
............................................................................................................................................................................TCCTTACTTTTTTTTTTTTTTTTAGG....................................................261.000.00---1.00--------------------------------
.............................................................................................................................................................................CCTTACTTTTTTTTTTTTTTTTTTAG...................................................261.000.001.00-----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTAACC......................................................271.000.00------1.00-----------------------------
..............................................................................................................................................................................CTTACTTTTTTTTTTTTCTGG.......................................................211.000.00--1.00---------------------------------
.........................................................................................................................................................................................................................TCTGGGAAGGTGAACATTTGTAGC.........2430.670.67----------0.67-------------------------
..........................................................................................................................................................................................................................CTGGGAAGGTGAACATTTGTAGC.........2330.670.67---------0.33---------------------0.33----
.......................................................................................................................................................................................................................TCTCTGGGAAGGTGAACATT...............2030.670.67----------0.67-------------------------
.........................................................................................................................................................................................................................TCTGGGAAGGTGAACATTTGTAG..........2330.670.67----------------------0.33-------0.33-----
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACCAG..................................................2420.500.50---0.50--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTTTAG...................................................3040.500.25-0.25--0.25-------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTCAAG...................................................3040.500.25--0.50---------------------------------
.......................................................................................................................................................................................................................TCTCTGGGAAGGTGAAC..................1730.330.33----------------------------0.33-------
........................................................................................................................................................................TTTTTCCTTACTTTTTTTTTTTTT..........................................................2430.330.33---0.33--------------------------------
............................................................................................................................................................................................................ATCATTTTTCTTCTCTGGGAAGGTG.....................2530.330.33--------0.33---------------------------
..................................................................................................................................................................................................................TTTCTTCTCTGGGAAGGTGAACATTTGT............2830.330.33-----------0.33------------------------
........................................................................................................................................................................................................................CTCTGGGAAGGTGAACAT................1830.330.33--------------------------0.33---------
..........................................................................................................................................................................................................................CTGGGAAGGTGAACATTTGTAG..........2230.330.33---------0.33--------------------------
.......................................................................................................................................................................................................................................CATTTGTAGCATTGATTT.1830.330.33--------------------------------0.33---
.........................................................................................................................................................................................................................TCTGGGAAGGTGAACATTTGTA...........2230.330.33----------------------0.33-------------
...........................................................................................................................................................................................................................TGGGAAGGTGAACATTTGTAGCATTGAT...2830.330.33---------------------------0.33--------
....................................................................................................................................................................................................................................GAACATTTGTAGCATTGA....1830.330.33-----------------------0.33------------
...............................................................................................................................................................................................................................AAGGTGAACATTTGTAGCATT......2130.330.33-------0.33----------------------------
.........................................................................................................................................................................................................................TCTGGGAAGGTGAACATTTGTAGCA........2530.330.33-----------------------------0.33------
...............................................................................................................................................................................................................................AAGGTGAACATTTGTAGCATTG.....2230.330.33-------0.33----------------------------
............................................................................................................................................................................................................ATCATTTTTCTTCTCTGGGA..........................2030.330.33--------0.33---------------------------
.....................................................................................................................................................................................................................................AACATTTGTAGCATTGATT..1930.330.33-------------------------0.33----------
...............................................................................................................................................................................................................ATTTTTCTTCTCTGGGAAGGTGAACA.................2630.330.33------------------------0.33-----------
....................................................................................................................................................................................................................TCTTCTCTGGGAAGGTGAACATTTGTAGC.........2930.330.33---------------------0.33--------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTT........................................................2570.290.29-0.29----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTCAAG....................................................2970.290.29--0.140.14--------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTTAA....................................................2940.250.25-0.25----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTT.......................................................2640.250.25-----0.25------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTTC.....................................................2840.250.25----0.25-------------------------------
.................................................................................................................................................................................ACTTTTTTTTTTTTTTTTACCAG..................................................2340.250.25-0.25----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTTCAGG...................................................3040.250.25---0.25--------------------------------
........................................................................................................................................................................................................AAAAATCATTTTTCTTCTCTG.............................2140.250.25----------------------------------0.25-
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACC....................................................2280.250.250.12-----0.12-----------------------------
...............................................................................................................................................................................................................ATTTTTCTTCTCTGGGAA.........................1840.250.25---------------------------------0.25--
..............................................................................................................................................................................................................CATTTTTCTTCTCTGGGA..........................1850.200.20--------0.20---------------------------
.............................................................................................................................................................................................................TCATTTTTCTTCTCTGGG...........................1860.170.17-----------------------------------0.17
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTAAAT....................................................2970.140.290.14-----------------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTCTT.....................................................2870.140.29------0.14-----------------------------
.........................................................................................................................................................................TTTTCCTTACTTTTTTTTTTTTTTTCAAT....................................................2970.140.29---0.14--------------------------------
................................................................................................................................................................................TACTTTTTTTTTTTTTTTTACCCA..................................................2480.120.25-0.12----------------------------------

Antisense strand
CCGCAGGGGGCATTTCCGTCTGGCGAGGCGACTGAAAATCCTGAGTGTGGGAGTCGGTTTGGCCAGCTCCGCTCTCAGGATGGAGGGTGCCTTTGGGAAGGAAGGTCCGCGTTTCCTTTGAGATGTGTTATTTTTTAAACTTCGTTTTTCATTCTTACTTATTTCTTGTTTTTCCTTACTTTTTTTTTTTTTTTTACCAGAAAAATCATTTTTCTTCTCTGGGAAGGTGAACATTTGTAGCATTGATTTC
.....................................................................................((((.....((((((((((((.((((((((....)))))))).........((((...........................))))......)))))))))))).....))))....................................................
.....................................................................................86................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR029129(GSM416758)
SW480. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
....................................................................................................................................................................................TTTTTTTTTTTTTTTACCAGTGT............................................... 231.000.00-------------------1.00----------------
..........................................................TTGGCCAGCTCCGCTCC............................................................................................................................................................................... 171.000.00------------------1.00-----------------
..................................CCACACTCAGGATTTT........................................................................................................................................................................................................ 1630.330.33---------------------0.33--------------