ID: uc010tiu.1_intron_1_0_chr13_99890809_f.3p
GENE: (2)
chr13:99895969-99896218+


(6)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(5)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
ATTATGATTTTGTTTAGGACATTAAAAATAGGCAGTGTAAACATAACAAATTTGCTAAGGAAGAGACCCGAACAAATTTTACTCTTGTTTATTGTTCTTTTTTAAATCCCCATCTAGATTTGGAGGTTGATATGTGGAAGAATAATTTGCCTTGATTTGAAAGATACTTTCTGCAGTAGTCTGCTTATTTATAATTTTAGGATATTTGAAAGAAGATATGGAAGCAGAAAATTTGCAGTAAGTTTTTATG
..........................................................................................................................(((((.(((.(((......)))))).))))).....(((((...))))).((((....))))..................................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577744(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR343336GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR189784SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................................TGCAGTAGTCTGCTTATTGGTT.........................................................226.000.00------2.00---1.00--------2.00--------------------1.00--------------------
............................................................................................................................................................................GCAGTAGTCTGCTTATTGGTT.........................................................214.000.00-4.00-----------------------------------------------------------
...............................................................................................................................................................................................TAATTTTAGGATATTTGAAAGAAGA..................................2514.004.004.00------------------------------------------------------------
.............................................................................................................................................................................................TATAATTTTAGGATATTTGAAAGAAGATA................................2914.004.004.00------------------------------------------------------------
...............................................................................................................................................................................................TAATTTTAGGATATTTGAAAGAAGAT.................................2613.003.002.00-1.00----------------------------------------------------------
..........................................................................................................................................AGAATAATTTGCCTTGATTTGAAAGATACTTTCTGCAGTAGTCTGCTTATTTATAATTTTAGGATATTTGAAAGAAGATATGGAAGCAGA......................9013.003.00-------3.00-----------------------------------------------------
...............................................................................................................................................................................................TAATTTTAGGATATTTGAAAGAAGATATGGA............................3112.002.002.00------------------------------------------------------------
.....................................................................................................................................................................................................TAGGATATTTGAAAGAAGATATGG.............................2412.002.00-----------------------------------1.00------1.00------------------
.............................................................................................................................................................................CAGTAGTCTGCTTATTGGTT.........................................................202.000.00-1.00----1.00------------------------------------------------------
..........................................................................................................................................................ATTTGAAAGATACTTTCTGCAGTAGTCTGCTTATTTATAATTTTAGGATATTTGAAAGAAGATATGGA............................6812.002.00------------------2.00------------------------------------------
.................................................................................................................................................................................................................AAGAAGATATGGAAGCAGAAAATTTG...............2612.002.00---2.00---------------------------------------------------------
......................................................................................................................................................................................................AGGATATTTGAAAGAAGATATGG.............................2312.002.00---2.00---------------------------------------------------------
................................................................................................................................................................................................AATTTTAGGATATTTGAAAGAAGATATGGAAGCAG.......................3512.002.00-----------------2.00-------------------------------------------
...............................................................................................................................................................................................TAATTTTAGGATATTTGAAAGAAGATA................................2712.002.002.00------------------------------------------------------------
....................................................................................................................GATTTGGAGGTTGATATGTGGAAGAT............................................................................................................262.000.00--------2.00----------------------------------------------------
............................................................................................................................................................................GCAGTAGTCTGCTTATTGGT..........................................................201.000.00---------------------------1.00---------------------------------
................................................................................................................................................................................................................AAAGAAGATATGGAAGCAGAAAATTTG...............2711.001.00-------------------------------------------------------1.00-----
.............................................................................................................................................................................CAGTAGTCTGCTTATTGGTG.........................................................201.000.00----------1.00--------------------------------------------------
...............................................................................................................................................................AAAGATACTTTCTGCAGTAGTCTGC..................................................................2511.001.00-----1.00-------------------------------------------------------
..................................................................................................................................................................................................TTTTAGGATATTTGAAAGAAGAT.................................2311.001.00--------------1.00----------------------------------------------
..............................................................................................................................................................................AGTAGTCTGCTTATTTATAATTTT....................................................2411.001.00-----1.00-------------------------------------------------------
.......................................................................................................................TTGGAGGTTGATATGTGGAAGAATA..........................................................................................................2511.001.001.00------------------------------------------------------------
...........................................................................................................................................................................................................ATTTGAAAGAAGATATGGAAGCAGAAAATTTGC..............3311.001.00-----------1.00-------------------------------------------------
.........................................................................................................................GGAGGTTGATATGTGGAAGAA............................................................................................................2111.001.00------------------------------------------------1.00------------
............................................................................................................................................................................................................TTTGAAAGAAGATATGGAAGCAGAA.....................2511.001.00--1.00----------------------------------------------------------
.................................................................................................................................................................................................ATTTTAGGATATTTGAAAGAAGATATGG.............................2811.001.00--1.00----------------------------------------------------------
..................................................................................................................................................TTGCCTTGATTTGAAAGATACTTTCTGCAGTA........................................................................3211.001.00-----------------------1.00-------------------------------------
............................................................................................................................................................................GCAGTAGTCTGCTTATTGG...........................................................191.000.00-1.00-----------------------------------------------------------
...................................................................................................................AGATTTGGAGGTTGATATGTG..................................................................................................................2111.001.00---------------------------------------------------1.00---------
.....................................................................................................................ATTTGGAGGTTGATATGTGGAAGAATA..........................................................................................................2711.001.00-----------------------------------------------1.00-------------
......................................................................................................................TTTGGAGGTTGATATGTGGAAGAATAATTTGC....................................................................................................3211.001.00-----------1.00-------------------------------------------------
..............................................................................................................................TTGATATGTGGAAGAATAATTTG.....................................................................................................2311.001.00----------------1.00--------------------------------------------
...........................................................................................................................................................................TGCAGTAGTCTGCTTATTTGTT.........................................................221.000.00---------------------------------1.00---------------------------
....................................................................................................................................................................................................TTAGGATATTTGAAAGAAG...................................1921.001.00---------------------------------------------------------0.500.50--
............................................................................................................................GGTTGATATGTGGAAGAAT...........................................................................................................1911.001.00------------1.00------------------------------------------------
.......................................................................................................................TTGGAGGTTGATATGTGGAAGA.............................................................................................................2211.001.00----------------1.00--------------------------------------------
..................................................................................................................................................................................................................AGAAGATATGGAAGCAGAAAATTTGC..............2611.001.00---------------1.00---------------------------------------------
......................................................................................................................TTTGGAGGTTGATATGTGGAAGA.............................................................................................................2311.001.00-------------------------------------1.00-----------------------
........................................................AAGGAAGAGACCCGAACAAAT.............................................................................................................................................................................2111.001.00-------------------------------------------------1.00-----------
...............................................................................................................................TGATATGTGGAAGAATAATTTGCCTTG................................................................................................2711.001.00------------1.00------------------------------------------------
............................................................................................................................................AATAATTTGCCTTGATTT............................................................................................1811.001.00------------------------1.00------------------------------------
.........TTGTTTAGGACATTAAAAATAGGC.........................................................................................................................................................................................................................2411.001.00-------------------------------------------1.00-----------------
............................................................................................................................................................................GCAGTAGTCTGCTTATTGGGT.........................................................211.000.00-1.00-----------------------------------------------------------
.....................................................................................................................................................................................................................AGATATGGAAGCAGAAAATTT................2111.001.00----------------------1.00--------------------------------------
.............................................................................................................................................................................CAGTAGTCTGCTTATTTATAA........................................................2111.001.00----------------------------------------------------1.00--------
......................................................................................................................................................................................................AGGATATTTGAAAGAAGATATGGAAGCAGA......................3011.001.00---------------------------------------1.00---------------------
......................................................................................................................TTTGGAGGTTGATATGTGGAAG..............................................................................................................2211.001.00---------------------1.00---------------------------------------
..................................................................................................................................................................................................................AGAAGATATGGAAGCGGA......................181.000.00-----1.00-------------------------------------------------------
...................................................................................................................................................................ATACTTTCTGCAGTAGTCTGC..................................................................2111.001.00--1.00----------------------------------------------------------
............................................................................................................................GGTTGATATGTGGAAGAA............................................................................................................1811.001.00-------------1.00-----------------------------------------------
..................................................................................................................................................................................................................AGAAGATATGGAAGCAGAAATCT.................231.000.00-------------------------1.00-----------------------------------
.................................................................................................................................................................................................ATTTTAGGATATTTGAAAGAAGATATGGA............................2911.001.00----1.00--------------------------------------------------------
...............................................................................................................................................................................................................GAAAGAAGATATGGAAGCAGAAAATTTGCAGT...........3211.001.00----------------------------------------------1.00--------------
...................................................................................................................AGATTTGGAGGTTGATATGTGGAAGAATA..........................................................................................................2911.001.00----1.00--------------------------------------------------------
....................................................................................................................................................................................................TTAGGATATTTGAAAGAAGATA................................2211.001.00--------------------1.00----------------------------------------
..................................................................................................................................................................................................TTTTAGGATATTTGAAAGAAGATA................................2411.001.00-------------------------------1.00-----------------------------
...............................................................................................................................TGATATGTGGAAGAATAATTTGCC...................................................................................................2411.001.00--------------------------------1.00----------------------------
...............................................................................................................................TGATATGTGGAAGAATAATTTGCCTT.................................................................................................2611.001.001.00------------------------------------------------------------
........................................................................................................................TGGAGGTTGATATGTGGAAGAA............................................................................................................2211.001.00----1.00--------------------------------------------------------
....................................................................CGAACAAATTTTACTAGG....................................................................................................................................................................181.000.00------------------------------------------------------1.00------
..................................................................................................................................................................................................................AGAAGATATGGAAGCAGAAAATTTG...............2511.001.00----1.00--------------------------------------------------------
.............................................................................................................................................ATAATTTGCCTTGATTTGAAAGATACTTTCTG.............................................................................3211.001.00------------------------------------1.00------------------------
...................................................................................................................................................................................................................GAAGATATGGAAGCAGAAAATTT................2311.001.00-----1.00-------------------------------------------------------
........................................................................................................................TGGAGGTTGATATGTGGAAGAATAATT.......................................................................................................2711.001.001.00------------------------------------------------------------
........................................................................................................................TGGAGGTTGATATGTGGAAGAATA..........................................................................................................2411.001.00---------------------------------------------1.00---------------
...........................................................................................................................................................................................................ATTTGAAAGAAGATATGG.............................1811.001.00--------------------------------------------------1.00----------
.................................................................................................................................................................................................ATTTTAGGATATTTGAAAGAAGATA................................2511.001.001.00------------------------------------------------------------
........................................................................................................................TGGAGGTTGATATGTGGAA...............................................................................................................1911.001.00----------------------------------1.00--------------------------
................................................................................................................................................................................................AATTTTAGGATATTTGAAAGAAGA..................................2411.001.00-----------------------------1.00-------------------------------
............................................................................................................................GGTTGATATGTGGAAGAATA..........................................................................................................2011.001.00------------------------------1.00------------------------------
......................................................................AACAAATTTTACTCTCTTG.................................................................................................................................................................191.000.00----------------------------1.00--------------------------------
........................................................................................................................TGGAGGTTGATATGTGGAAG..............................................................................................................2011.001.00-------------1.00-----------------------------------------------
............................................................................................................................................................................................................TTTGAAAGAAGATATGGAAGCAGAAAATTTGC..............3211.001.00---------------1.00---------------------------------------------
.................................................................................................................................................................AGATACTTTCTGCAGTAGTCTGCTT................................................................2511.001.00--------------------------1.00----------------------------------
.......................................................................ACAAATTTTACTCTTTTC.................................................................................................................................................................181.000.00--------------------------------------------------------1.00----
.............................................................................................................................................................................................................TTGAAAGAAGATATGGAAGCAGAAAA...................2611.001.00-----------------------------------------------------1.00-------
....................................................................................................................................................................................................TTAGGATATTTGAAAGAAGATATGGAAGC.........................2911.001.001.00------------------------------------------------------------
..........................................................................................................................GAGGTTGATATGTGGAAGAA............................................................................................................2011.001.00--------------------------------------------1.00----------------
........................................................................................................................................GAAGAATAATTTGCCTTGATTTGAA.........................................................................................2511.001.00--------------1.00----------------------------------------------
............................................................................................................................................................................GCAGTAGTCTGCTTATTTGTT.........................................................211.000.00-1.00-----------------------------------------------------------
.............................................................................................................................................................................................................TTGAAAGAAGATATGGAAGCAGAAAATTTGC..............3111.001.001.00------------------------------------------------------------
..........................................................................................................................................................................................ATTTATAATTTTAGGATA..............................................1820.500.50--------0.50----------------------------------------------------
.......................................................................................................................................................................................................................ATATGGAAGCAGAAAAT..................1740.250.25---------0.25---------------------------------------------------
...............AGGACATTAAAAATAG...........................................................................................................................................................................................................................1660.170.17-----------------------------------------------------------0.17-
..............................................................................................................................................................................................................TGAAAGAAGATATGGA............................1680.120.12------------------------------------------------------------0.12

Antisense strand
ATTATGATTTTGTTTAGGACATTAAAAATAGGCAGTGTAAACATAACAAATTTGCTAAGGAAGAGACCCGAACAAATTTTACTCTTGTTTATTGTTCTTTTTTAAATCCCCATCTAGATTTGGAGGTTGATATGTGGAAGAATAATTTGCCTTGATTTGAAAGATACTTTCTGCAGTAGTCTGCTTATTTATAATTTTAGGATATTTGAAAGAAGATATGGAAGCAGAAAATTTGCAGTAAGTTTTTATG
..........................................................................................................................(((((.(((.(((......)))))).))))).....(((((...))))).((((....))))..................................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577744(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR343336GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR189784SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................GGAGGTTGATATGTGCCTA.............................................................................................................. 192.000.00---------2.00---------------------------------------------------
.....................................................................................TGTTTATTGTTCTTTCGTG.................................................................................................................................................. 191.000.00-----------------------------------------1.00-------------------