ID: uc010tgx.1_intron_14_0_chr13_52730384_r.5p
GENE: (1)
chr13:52733478-52733727-


(4)
AGO2.ip
(4)
B-CELL
(8)
BREAST
(21)
CELL-LINE
(5)
CERVIX
(3)
HEART
(3)
HELA
(5)
LIVER
(1)
OTHER
(9)
SKIN
(1)
XRN.ip

Sense strand
AGCCGCCGGTTGCCAGGCCAAGGAGTGGACTAGGGTCGCCGGGGAAGCGGGTGAGTGGTCCCCGCCCTGGCGGGCTGCCTCTAGAACGAGGAGGGCGGCGCGTGGTCGCGGCGCGGAGCCGAGTGGGAGCGAGGGGTAGACGCGCCCCGGACGCGCGGCCGCGCCCCTCACTTCCGCCCCGCGGTCTGGACCACTCGCCGCAAACCCGCAAGTCCCTCGCCGCCTTGGGGTCTGGGCGCGCGGTGCCGTG
......................................................((.((((..((((....))))..((((......)))).)))).)).......................................................................................................................................................
..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040029(GSM532914)
G026T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040009(GSM532894)
G727T. (cervix)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189786TAX577589(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
.....................................................................................ACGAGGAGGGCGGCGCCG...................................................................................................................................................1864.000.0021.0013.009.008.006.00-4.003.00-----------------------------------------------------
..............AGGCCAAGGAGTGGACTAG.........................................................................................................................................................................................................................1914.004.00-------------------1.00-----1.00------1.00-----------1.00----------------
......................................................GTGGTCCCCGCCCTGGCGGGCTGC............................................................................................................................................................................2413.003.00-----3.00-------------------------------------------------------
...................................TCGCCGGGGAAGCGGGTGAGTGGTCCCCG..........................................................................................................................................................................................2913.003.00---------3.00---------------------------------------------------
..............................TAGGGTCGCCGGGGAAGCGGGTGAGTGGTCCCCGCCCTGGCGGGCTGCCTCTAGAACGAGGAGCGC..........................................................................................................................................................663.000.00--------------3.00----------------------------------------------
...................AAGGAGTGGACTAGGGTCGC...................................................................................................................................................................................................................2013.003.00------------1.00----------------------------------1.00----1.00--------
....................................................................................................CGTGGTCGCGGCGCGGAGCCGAGTGGGAGCGAGGGGTAGACGCGCCCCGGACGCGCGG............................................................................................5813.003.00----------3.00--------------------------------------------------
.............CAGGCCAAGGAGTGGACTAG.........................................................................................................................................................................................................................2012.002.00------------------1.00--------------------------------1.00---------
..................................................................................................................................................................................CCGCGGTCTGGACCACTCGC....................................................2012.002.00----------------2.00--------------------------------------------
.........................................................................................................................AGTGGGAGCGAGGGGTAGAAA............................................................................................................212.000.00-----------------2.00-------------------------------------------
.....................................GCCGGGGAAGCGGGTGA....................................................................................................................................................................................................1712.002.00---------------1.00----------------------1.00----------------------
..............AGGCCAAGGAGTGGACTA..........................................................................................................................................................................................................................1812.002.00-------------------1.001.00----------------------------------------
..................CAAGGAGTGGACTAGGGT......................................................................................................................................................................................................................1812.002.00------------1.00-------1.00----------------------------------------
..............................................................................CTCTAGAACGAGGAGGGCGGCGCGTG..................................................................................................................................................2612.002.00------------------------1.00--------------1.00---------------------
.....................................GCCGGGGAAGCGGGTGAG...................................................................................................................................................................................................1812.002.00---------------------1.00----1.00----------------------------------
................................................................................................................GCGGAGCCGAGTGGGAGCG.......................................................................................................................1911.001.00-----------------------------------------1.00-------------------
.........................................................................GCTGCCTCTAGAACGAGGAGGGC..........................................................................................................................................................2311.001.00----------------------------------------------1.00--------------
........................................................................................................GTCGCGGCGCGGAGCCGAGTGGGAGCG.......................................................................................................................2711.001.00---------------1.00---------------------------------------------
.............................CTAGGGTCGCCGGGGAAGCGG........................................................................................................................................................................................................2111.001.00----------------------------------1.00--------------------------
....................................................................................................................AGCCGAGTGGGAGCGAGGGGTAGACGC...........................................................................................................2711.001.00-------1.00-----------------------------------------------------
............................................AAGCGGGTGAGTGGTCCC............................................................................................................................................................................................1811.001.00----------------------------------------1.00--------------------
............................................................................GCCTCTAGAACGAGGAGGGC..........................................................................................................................................................2011.001.00----------------------------1.00--------------------------------
....................................................................................................................................................GGACGCGCGGCCGCGCAG....................................................................................181.000.00-----------------------1.00-------------------------------------
................................................................................................GGCGCGTGGTCGCGGGTAC.......................................................................................................................................191.000.00---------------------1.00---------------------------------------
......................GAGTGGACTAGGGTCGC...................................................................................................................................................................................................................1711.001.00-----------1.00-------------------------------------------------
....................................CGCCGGGGAAGCGGGTGG....................................................................................................................................................................................................181.000.00-----------------------------1.00-------------------------------
....................................................................................AACGAGGAGGGCGGCGCCG...................................................................................................................................................191.000.001.00------------------------------------------------------------
............CCAGGCCAAGGAGTGGACTAG.........................................................................................................................................................................................................................2111.001.00------------------1.00------------------------------------------
..........................GGACTAGGGTCGCCGGGGAAG...........................................................................................................................................................................................................2111.001.00----------------------1.00--------------------------------------
..............................................................................CTCTAGAACGAGGAGGGC..........................................................................................................................................................1811.001.00---------------------------1.00---------------------------------
......................................CCGGGGAAGCGGGTGGGT..................................................................................................................................................................................................181.000.00------------------------------------1.00------------------------
..............................................................................CTCTAGAACGAGGAGGGCGGCG......................................................................................................................................................2211.001.00-------------------------------------------------1.00-----------
.....................................................................................ACGAGGAGGGCGGCGCCA...................................................................................................................................................181.000.00----1.00--------------------------------------------------------
............................................................................................................................................................................TCCGCCCCGCGGTCTGGACCACTCGC....................................................2611.001.00-----------1.00-------------------------------------------------
......................................................................................CGAGGAGGGCGGCGCCTC..................................................................................................................................................181.000.00---------------------------------1.00---------------------------
...................AAGGAGTGGACTAGGGTCGCC..................................................................................................................................................................................................................2111.001.00-------------------------------------1.00-----------------------
................GCCAAGGAGTGGACTAG.........................................................................................................................................................................................................................1711.001.00-----------1.00-------------------------------------------------
..................CAAGGAGTGGACTAGGG.......................................................................................................................................................................................................................1711.001.00------------1.00------------------------------------------------
........................................................................................................................................TAGACGCGCCCCGGACGCGCGGCT..........................................................................................241.000.00------------------------------------------1.00------------------
.......................................................................GGGCTGCCTCTAGAACGAG................................................................................................................................................................1920.500.50--------------------------------------------------------0.50----
...................................................................................................................................................................................................................................GGGTCTGGGCGCGCGCCGC....1940.500.25----------------------0.25-----------------------------------0.25--
...........................................................................................AGGGCGGCGCGTGGTC...............................................................................................................................................1630.330.33-------------------------------------------------------0.33-----
............................................................................................................CGGCGCGGAGCCGAG...............................................................................................................................1580.250.25--------0.12------0.12---------------------------------------------
...................................................................................................................................................................................................................................GGGTCTGGGCGCGCG........1540.250.25---------------------------------------------------------0.25---
.............................................................................................................................................................................................................................GCCTTGGGGTCTGGGC.............1650.200.20------------------------------------------------------0.20------
.......................................................................................................................CGAGTGGGAGCGAGG....................................................................................................................1560.170.17-----------------------------------------------------------0.17-
............................................................................................................CGGCGCGGAGCCGAGACC............................................................................................................................1880.120.25------------------------------------------------------------0.12

Antisense strand
AGCCGCCGGTTGCCAGGCCAAGGAGTGGACTAGGGTCGCCGGGGAAGCGGGTGAGTGGTCCCCGCCCTGGCGGGCTGCCTCTAGAACGAGGAGGGCGGCGCGTGGTCGCGGCGCGGAGCCGAGTGGGAGCGAGGGGTAGACGCGCCCCGGACGCGCGGCCGCGCCCCTCACTTCCGCCCCGCGGTCTGGACCACTCGCCGCAAACCCGCAAGTCCCTCGCCGCCTTGGGGTCTGGGCGCGCGGTGCCGTG
......................................................((.((((..((((....))))..((((......)))).)))).)).......................................................................................................................................................
..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040029(GSM532914)
G026T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040009(GSM532894)
G727T. (cervix)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189786TAX577589(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
.................................................................................................GCGCGTGGTCGCGGCGCGCG..................................................................................................................................... 206.000.00--------3.00----3.00-----------------------------------------------
...............................................................................................................................................................GGCGGAAGTGAGGGGCGCG........................................................................ 1911.001.00-----------------------------------------------------1.00-------
..........................................................CCCGCCAGGGCGGGGA................................................................................................................................................................................ 1611.001.00------------------------------1.00------------------------------
............................................................................................................................................................................................TGCGGGTTTGCGGCGAGTGGTC........................................ 2211.001.00---------------------------------------------1.00---------------
.....................................................CCGCCAGGGCGGGGACCACT................................................................................................................................................................................. 2011.001.00------------------------------------------------1.00------------
........................................................................................................................................................GCGCGGCCGCGCCCCCTC................................................................................ 181.000.00-------------------------------1.00-----------------------------
.......................................................................................................................................................CGCGCGGCCGCGCCCCCGC................................................................................ 191.000.00-----------------------------------1.00-------------------------
...........................................................................................................................................................................TTCCGCCCCGCGGTCCC.............................................................. 171.000.00-------------------------------------------1.00-----------------
............................................................................................................................................................................................................................GCGCCCAGACCCCAAGGCG........... 1911.001.00--------------------------------------------------1.00----------
........................................................................GGCTGCCTCTAGAACGATC............................................................................................................................................................... 191.000.00-----1.00-------------------------------------------------------
............................................................................................................................CTACCCCTCGCTCCC............................................................................................................... 1520.500.50------------------------------------------------------0.50------
......................................................................................................................................................................CGGGGCGGAAGTGAG..................................................................... 1550.200.20-------------------------------------------------------0.20-----