ID: uc010tbl.1_intron_1_0_chr12_131357458_f
GENE: (2)
chr12:131357408-131357597+


(1)
AGO2.ip 		(1)
AGO3.ip 		(8)
B-CELL 		(7)
BREAST 		(26)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(10)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
GGAAAAACGACCTTCGTGAAACGTCATTTGACTGGTGAATTTGAGAAGAAGTATGTAGGTATGTGCTGGAAAACCTTGCTTGTGGAAATATGTGAGAAATGGGTAAGTTCATCCACTCAATCGCATCGTTTCCGTTTCAGCCACCTTGGGTGTTGAGGTTCATCCCCTAGTGTTCCACACCAACAGAGGA
..................................................................................(((((((((((((....(((((......))))).....)))))).)))))))........................................................
.....................................................................70....................................................................140................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189785SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038861(GSM458544)
MM466. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040011(GSM532896)
G529T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925PAZD5SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................GTATGTGCTGGAAAACCTTGCTTGTGGAAATATGTGAGAAATGGGTAAGTTCATCCACTCAATCGCATCGTTTCCGTTTCAG..................................................82153.0053.009.0043.00--------------------------------1.00----------------------------------------------------
..........................................................GTATGTGCTGGAAAACCTTGCTTGTGGAAATATGTGAGAAATGGGTAAGTTCATCCACTCAATCGCATCGTTTCCGTTTC....................................................80113.0013.0012.00----------------------------------------------1.00---------------------------------------
....AAACGACCTTCGTGAAACGTCATTTGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................4817.007.007.00--------------------------------------------------------------------------------------
...........CTTCGTGAAACGTCATTTGACTGG...........................................................................................................................................................2416.006.00-----6.00---------------------------------------------------------------------------------
.........................................TGAGAAGAAGTATGTAG....................................................................................................................................1735.335.33------0.33-0.33-0.67---2.67--0.67--------------0.33------------------------------------------------0.33-----
....................ACGTCATTTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................3315.005.00--3.00------2.00-----------------------------------------------------------------------------
...................AACGTCATTTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................3414.004.00--4.00------------------------------------------------------------------------------------
............................................................ATGTGCTGGAAAACCTTGCTTGTGGAAATATGTGAGAAATGGGTAAGTTCATCCACTCAATCGCATCGTTTCCGTTTC....................................................7814.004.004.00--------------------------------------------------------------------------------------
............................TGACTGGTGAATTTGAGAAGAAGAA.........................................................................................................................................254.000.00------------------2.00------1.00-----------------1.00-------------------------------------------
..................AAACGTCATTTGACTGGTGAATTTGAGAAGAAG...........................................................................................................................................3313.003.00------3.00--------------------------------------------------------------------------------
...................AACGTCATTTGACTGGTGAATTTG...................................................................................................................................................2413.003.00---3.00-----------------------------------------------------------------------------------
............TTCGTGAAACGTCATTTGACTGGTGAATTT....................................................................................................................................................3013.003.00----3.00----------------------------------------------------------------------------------
...AAAACGACCTTCGTGAAACGTCATTTGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................4913.003.003.00--------------------------------------------------------------------------------------
.................................................................................................................................................................ATCCCCTAGTGTTCCACACCAAC......2322.502.50-------2.50-------------------------------------------------------------------------------
............................TGACTGGTGAATTTGAGAAGA.............................................................................................................................................2122.502.50-----------0.50----------0.50----------------1.00----------------------------------0.50------------
..................AAACGTCATTTGACTGGTGAACTTG...................................................................................................................................................252.000.00---2.00-----------------------------------------------------------------------------------
..............CGTGAAACGTCATTTGACTGGTGT........................................................................................................................................................242.000.00-------------2.00-------------------------------------------------------------------------
..................AAACGTCATTTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................3512.002.00----------------2.00----------------------------------------------------------------------
...............GTGAAACGTCATTTGACTGGTGAATTT....................................................................................................................................................2712.002.00--------2.00------------------------------------------------------------------------------
....................ACGTCATTTGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................3212.002.00---------1.00---1.00-------------------------------------------------------------------------
..........................TTTGACTGGTGAATTTGAGAAGAAG...........................................................................................................................................2521.501.50---------------0.50-----------------------------0.50--0.50--------------------------------------
.........................ATTTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................2821.501.50---------0.50------0.50------------------------------------------0.50---------------------------
..........................TTTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................2721.501.50-------0.50-----------------------------------------0.50-----------------------------0.50-------
....................................GAATTTGAGAAGAAGTATGT......................................................................................................................................2021.501.50----------------------------1.50----------------------------------------------------------
..................................GTGAATTTGAGAAGAAGTA.........................................................................................................................................1921.501.50-----------------------------1.50---------------------------------------------------------
...........................TTGACTGGTGAATTTGAGAAGAA............................................................................................................................................2321.501.50-------0.50----------------------------------------0.50----------------------------0.50---------
...........................TTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................2621.501.50----0.50-----------------0.50---------------------------------------0.50------------------------
........................CATTTGACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................3121.501.50--0.50---------1.00--------------------------------------------------------------------------
.......................................TTTGAGAAGAAGTATGTAG....................................................................................................................................1921.501.50----0.50------------0.50--------0.50------------------------------------------------------------
..........................................................GTATGTGCTGGAAAACCTTGCTTGTGGAA.......................................................................................................2911.001.00--------------------------------------------------1.00------------------------------------
.............TCGTGAAACGTCATTTGACTGGTGA........................................................................................................................................................2511.001.00----------------------------------------1.00----------------------------------------------
.................GAAACGTCATTTGACTGGTGAATTTGAGAAGAA............................................................................................................................................3311.001.00----------------------------------------------------1.00----------------------------------
.............TCGTGAAACGTCATTTGACTGG...........................................................................................................................................................2211.001.00---------------------1.00-----------------------------------------------------------------
........................................TTGAGAAGAAGTATGTAG....................................................................................................................................1821.001.00--0.50-------0.50----------------------------------------------------------------------------
..........................................................................CTTGCTTGTGGAAATACGT.................................................................................................191.000.00-------------------1.00-------------------------------------------------------------------
...........................TTGACTGGTGAATTTGAGAAGAAG...........................................................................................................................................2421.001.00----------------------0.500.50---------------------------------------------------------------
...................AACGTCATTTGACTGGTGAATTCGAG.................................................................................................................................................261.000.00---1.00-----------------------------------------------------------------------------------
.............................................................................................................................TCGTTTCCGTTTCAG..................................................1521.001.00----------1.00----------------------------------------------------------------------------
............................................................................................................................................................................TTCCACACCAACAGAGGACCAT221.000.00---1.00-----------------------------------------------------------------------------------
............................................................................TGCTTGTGGAAATATGTGAGAAATGGGTAAGT..................................................................................3211.001.00-------------------------------1.00-------------------------------------------------------
............................TGACTGGTGAATTTGAGAAGAAGTATGTAG....................................................................................................................................3021.001.00----------0.50---------------0.50------------------------------------------------------------
.................................................................................................................................................................ATCCCCTAGTGTTCCACACCAAA......231.000.00-------1.00-------------------------------------------------------------------------------
....................ACGTCATTTGACTGGTGAATTTGAGAAGA.............................................................................................................................................2911.001.00--1.00------------------------------------------------------------------------------------
.......................................TTTGAGAAGAAGTATGTAGTG..................................................................................................................................2121.001.50---------------------------------------------------1.00-----------------------------------
.............................GACTGGTGAATTTGAGAAGAAGTTT........................................................................................................................................251.000.00---------------------------------1.00-----------------------------------------------------
.................................................................................................................CACTCAATCGCATCGTTTCCGTTTC....................................................2511.001.00------------------------------------------1.00--------------------------------------------
.................GAAACGTCATTTGACTGGTGAATTTGAGAAG..............................................................................................................................................3111.001.00------1.00--------------------------------------------------------------------------------
.....................CGTCATTTGACTGGTGAATTTGAGAATAA............................................................................................................................................291.000.00--------------------1.00------------------------------------------------------------------
............TTCGTGAAACGTCATTTGACTGGTGAAT......................................................................................................................................................2811.001.00----1.00----------------------------------------------------------------------------------
.....................CGTCATTTGACTGGTGAATTTGAGAAGA.............................................................................................................................................2811.001.00------------1.00--------------------------------------------------------------------------
..........................................................GTATGTGCTGGAAAACCTTGCTTGTG..........................................................................................................2611.001.00--------------------------------------------1.00------------------------------------------
..........CCTTCGTGAAACGTCATTTGACTGGTGAATT.....................................................................................................................................................3111.001.00----1.00----------------------------------------------------------------------------------
...................AACGTCATTTGACTGGTGAATCTG...................................................................................................................................................241.000.00---1.00-----------------------------------------------------------------------------------
......ACGACCTTCGTGAAACGTCATTTGACTGGT..........................................................................................................................................................3011.001.00---------------1.00-----------------------------------------------------------------------
...............GTGAAACGTCATTTGACTGGTGAAA......................................................................................................................................................251.000.00-----------------------------------------1.00---------------------------------------------
......................GTCATTTGACTGGTGAATTTGAGAAG..............................................................................................................................................2611.001.00-----------------------1.00---------------------------------------------------------------
.......................TCATTTGACTGGTGAATTTGAGAAGAA............................................................................................................................................2721.001.00----------0.50---------------------0.50------------------------------------------------------
..............................ACTGGTGAATTTGAGAAGAAGTAGTAG.....................................................................................................................................271.000.00-------------------------------------------------------1.00-------------------------------
...................................................................................................................................................GGGTGTTGAGGTTCATCC.........................1821.001.00---------------------------0.50----------------------------0.50------------------------------
.......................TCATTTGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................3021.001.00---------0.50------------0.50----------------------------------------------------------------
..........CCTTCGTGAAACGTCATTTGACTGG...........................................................................................................................................................2511.001.00--1.00------------------------------------------------------------------------------------
.............................................................TGTGCTGGAAAACCTTGCTTGTGG.........................................................................................................2411.001.00-----------------1.00---------------------------------------------------------------------
.........................ATTTGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................2721.001.00------------------------------0.50------------------------------------0.50-------------------
..........................TTTGACTGGTGAATTTGAGAAGAAGGA.........................................................................................................................................2721.001.50-------1.00-------------------------------------------------------------------------------
............................................GAAGAAGTATGTAGGAGA................................................................................................................................181.000.00----------------------------------------------1.00----------------------------------------
.........ACCTTCGTGAAACGTCATTTGACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................4611.001.00-----------------------------------------------------1.00---------------------------------
...............GTGAAACGTCATTTGACTGG...........................................................................................................................................................2011.001.00---------------------1.00-----------------------------------------------------------------
......ACGACCTTCGTGAAACGT......................................................................................................................................................................1811.001.00------------------------------------1.00--------------------------------------------------
..................................GTGAATTTGAGAAGAAGTATGTAG....................................................................................................................................2421.001.00------------------------1.00--------------------------------------------------------------
...........................................................................TTGCTTGTGGAAATACGT.................................................................................................181.000.00-------------------1.00-------------------------------------------------------------------
..........................TTTGACTGGTGAATTTGAGAAGAAA...........................................................................................................................................251.000.00--------------------1.00------------------------------------------------------------------
....................ACGTCATTTGACTGGTGAATTTGAGAAGAAG...........................................................................................................................................3111.001.00-------------------------------------1.00-------------------------------------------------
................TGAAACGTCATTTGACTGGTGAATTTGAGAAG..............................................................................................................................................3211.001.00---------------1.00-----------------------------------------------------------------------
..........................................GAGAAGAAGTATGTAGGT..................................................................................................................................1811.001.00--------------------------------------1.00------------------------------------------------
.......................TCATTTGACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................3221.001.00--0.50---0.50--------------------------------------------------------------------------------
........................CATTTGACTGGTGAATTTGAGAAG..............................................................................................................................................2430.670.67------0.33-----0.33--------------------------------------------------------------------------
............................TGACTGGTGAATTTGAGAAGAAGTA.........................................................................................................................................2520.500.50----------------------------------------------------------------------------0.50----------
.........................ATTTGACTGGTGAATTTGAGAAGAA............................................................................................................................................2520.500.50--0.50------------------------------------------------------------------------------------
...........................TTGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................2520.500.50--0.50------------------------------------------------------------------------------------
.........................ATTTGACTGGTGAATTTGAGAAGAAGTATGT......................................................................................................................................3120.500.50------------0.50--------------------------------------------------------------------------
...............................CTGGTGAATTTGAGAAGAAGTAT........................................................................................................................................2320.500.50-------------------------------------------------0.50-------------------------------------
..........................TTTGACTGGTGAATTTGAGAAGA.............................................................................................................................................2320.500.50--------------------------------------------------------------------0.50------------------
..............................ACTGGTGAATTTGAGAAGAA............................................................................................................................................2020.500.50------------------------0.50--------------------------------------------------------------
............................TGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................2420.500.50--------------------------0.50------------------------------------------------------------
................................TGGTGAATTTGAGAAGAAGT..........................................................................................................................................2020.500.50--------0.50------------------------------------------------------------------------------
...........................TTGACTGGTGAATTTGAGAAGA.............................................................................................................................................2220.500.50----------------------------------------------------------0.50----------------------------
...........................TTGACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................2820.500.50------------------------------------------------------------------------0.50--------------
.......................TCATTTGACTGGTGAATTTGAGAAGAAGTAT........................................................................................................................................3120.500.50------0.50--------------------------------------------------------------------------------
.........................ATTTGACTGGTGAATTTGAGAAGAAGTAT........................................................................................................................................2920.500.50-------------------------------------------------------------------------0.50-------------
.............................GACTGGTGAATTTGAGAAGA.............................................................................................................................................2020.500.50---------------------------------------------------------------------0.50-----------------
...............................................................................................................................................CCTTGGGTGTTGAGGTTC.............................1820.500.50------------------------------------------------------------------0.50--------------------
...............................CTGGTGAATTTGAGAAGAAGT..........................................................................................................................................2120.500.50-----------------------------------------------------------------0.50---------------------
.................................GGTGAATTTGAGAAGAAGT..........................................................................................................................................1920.500.50------------------------------------------------------------0.50--------------------------
........................................................................................................................................................................AGTGTTCCACACCAACAGAG..2020.500.50----------------------------------------------------------------0.50----------------------
..................................................................................................................................................TGGGTGTTGAGGTTCATCC.........................1920.500.50-----------------------------------------------------------------------0.50---------------
....................................GAATTTGAGAAGAAGTATGTAG....................................................................................................................................2220.500.50----------0.50----------------------------------------------------------------------------
.............................GACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................2620.500.50-------------------------0.50-------------------------------------------------------------
.................................................................................................................................................................ATCCCCTAGTGTTCCACACC.........2020.500.50---------------------------------------------------------------------------0.50-----------
.......................TCATTTGACTGGTGAATTTGAGAAGAAGT..........................................................................................................................................2920.500.50--------------------------------0.50------------------------------------------------------
........................CATTTGACTGGTGAATTTGAGAAGAAGTATGTAG....................................................................................................................................3420.500.50------------0.50--------------------------------------------------------------------------
..........................TTTGACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................2920.500.50---------------------------------------------------------------0.50-----------------------
............................TGACTGGTGAATTTGAGAAGAAGTATG.......................................................................................................................................2720.500.50---------------------------------------------0.50-----------------------------------------
..........................TTTGACTGGTGAATTTGAGAAGAAGTATGTA.....................................................................................................................................3120.500.50------------------------------------------------------------------------------0.50--------
............................TGACTGGTGAATTTGAGAAGAAGTAT........................................................................................................................................2620.500.50-------------------------------------------------------------0.50-------------------------
...................................TGAATTTGAGAAGAAGTATGTAG....................................................................................................................................2320.500.50--------0.50------------------------------------------------------------------------------
.............................GACTGGTGAATTTGAGAAGAA............................................................................................................................................2120.500.50----------------------------------------------------------------------0.50----------------
...........................TTGACTGGTGAATTTGAGAAGAAGTATGTAG....................................................................................................................................3120.500.50---------------------------------------------------------0.50-----------------------------
.............................GACTGGTGAATTTGAGAAG..............................................................................................................................................1930.330.33--------------------------------------------------------0.33------------------------------
.............................................................................................................................................................................TCCACACCAACAGAGGA1730.330.33-------------------------------0.33-------------------------------------------------------
........................CATTTGACTGGTGAATTTGAGAA...............................................................................................................................................2330.330.33--------------------------------------------------------------------------------0.33------
........................................TTGAGAAGAAGTATGTA.....................................................................................................................................1730.330.33-----------------------0.33---------------------------------------------------------------
.............................................................................................................................................................GTTCATCCCCTAGTGTTCC..............1930.330.33----------------------------------------------------------------------------------0.33----
..........................TTTGACTGGTGAATTTGAG.................................................................................................................................................1940.250.25-----------------------------------------------------------------------------------0.25---
...........................TTGACTGGTGAATTTGAG.................................................................................................................................................1840.250.25------------------------0.25--------------------------------------------------------------
...................................................................................................................................................................CCCCTAGTGTTCCACA...........1640.250.25------------------------------------------------------------------------------------0.25--
..........................................GAGAAGAAGTATGTAG....................................................................................................................................1640.250.25---------------------------------0.25-----------------------------------------------------
........................CATTTGACTGGTGAATTTGAG.................................................................................................................................................2140.250.25------0.25--------------------------------------------------------------------------------
..........................TTTGACTGGTGAATTTG...................................................................................................................................................1760.170.17--------------------------------------------------------------------------------------0.17

Antisense strand
GGAAAAACGACCTTCGTGAAACGTCATTTGACTGGTGAATTTGAGAAGAAGTATGTAGGTATGTGCTGGAAAACCTTGCTTGTGGAAATATGTGAGAAATGGGTAAGTTCATCCACTCAATCGCATCGTTTCCGTTTCAGCCACCTTGGGTGTTGAGGTTCATCCCCTAGTGTTCCACACCAACAGAGGA
..................................................................................(((((((((((((....(((((......))))).....)))))).)))))))........................................................
.....................................................................70....................................................................140................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189785SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038861(GSM458544)
MM466. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040011(GSM532896)
G529T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925PAZD5SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................TGCGATTGAGTGGATGAA................................................................. 1813.003.00-----------3.00---------------------------------------------------------------------------
................................................AAGTATGTAGGTATGTGATAT......................................................................................................................... 211.000.00-----------------------------------1.00---------------------------------------------------
........................................................................................................................................................TTGAGGTTCATCCCCTGG.................... 181.000.00------------------------------1.00--------------------------------------------------------
.............................................................................................GAGAAATGGGTAAGTTCTAG............................................................................. 201.000.00------------------------------------------------------1.00--------------------------------
.....................................................................................................GTGGATGAACTTACC.......................................................................... 1560.170.17-------------------------------------------------------------------------------------0.17-