ID: uc010syp.1_intron_12_0_chr12_113553857_r.3p
GENE: (8)
chr12:113553807-113554056-


(1)
AGO1.ip
(2)
B-CELL
(2)
BRAIN
(9)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(7)
SKIN

Sense strand
ACTACAGGCGTGTGTCATCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGCTTCACCATGTTGGTCAGGCTGGTCACAAACTGCTGACCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCATCGTGTTCGGCCAGATCTTTCATTTTCTTATGATCTGATCCTGGACAGGGGGAACCTGGGTGCCCTGCGAGTGAAGGTACGCCTGATTGAGGACCGCG
.............................................................................................................................................(((....)))....(((((((.((((((..............))))))...)))))))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189786GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
...............................................................................................................................................CGTGAGCCATCGTGTAGGG........................................................................................199.000.00--9.00--------------------------
..............................................................................................................................AATGCTGGGATTACAGGCGAGCC.....................................................................................................238.000.005.003.00---------------------------
........................................................................................................................................................TCGTGTTCGGCCAGAG..................................................................................163.000.00-----2.00---------------1.00-------
.............................................................................................................................AAATGCTGGGATTACAGGCGAGCC.....................................................................................................243.000.002.001.00---------------------------
............................................AGTAGAGATGGGGCTTCACCATGTGGCC..................................................................................................................................................................................282.000.002.00----------------------------
............................................AGTAGAGATGGGGCTTCACCACGC......................................................................................................................................................................................242.000.001.001.00---------------------------
..............................................................................................................................AATGCTGGGATTACAGGCGAACC.....................................................................................................232.000.00-2.00---------------------------
.........................................TTTAGTAGAGATGGGGCTTCACCTATC......................................................................................................................................................................................272.000.002.00----------------------------
.................................................................................................................................................................................TCTTATGATCTGATCCTGGACAG..................................................2312.002.00-------2.00---------------------
...........................................TAGTAGAGATGGGGCTTCACCCCG.......................................................................................................................................................................................242.000.00-2.00---------------------------
...................................................ATGGGGCTTCACCATGTTGGTCAGATTG...........................................................................................................................................................................281.000.00---1.00-------------------------
...............................................................................................................................ATGCTGGGATTACAGGCGAGTC.....................................................................................................221.000.001.00----------------------------
.......................................................................................................................................ATTACAGGCGTGAGCCATCCCC.............................................................................................221.000.00-1.00---------------------------
......................................................................................................GATCTGCCCACCTTGGCCTCTTT.............................................................................................................................231.000.00------------------1.00----------
...............................................................CATGTTGGTCAGGCTGGTCAAATA...................................................................................................................................................................241.000.00--------------1.00--------------
..............................................TAGAGATGGGGCTTCACCATGTTGGTCAGGCAG...........................................................................................................................................................................331.000.00---1.00-------------------------
.......................................................GGCTTCACCATGTTGATA.................................................................................................................................................................................181.000.00---------------------------1.00-
..............................................TAGAGATGGGGCTTCACGGTG.......................................................................................................................................................................................211.000.00-1.00---------------------------
......................................ATTTTTAGTAGAGATGGGGCCCC.............................................................................................................................................................................................231.000.00-1.00---------------------------
........................................................................................................TCTGCCCACCTTGGCCTCCCAT............................................................................................................................221.000.00------------1.00----------------
..............................................TAGAGATGGGGCTTCACCACC.......................................................................................................................................................................................211.000.00-1.00---------------------------
..............................................TAGAGATGGGGCTTCACCATGTTGGTG.................................................................................................................................................................................271.000.001.00----------------------------
................................TTTTGTATTTTTAGTAGAGATGGGGCTAC.............................................................................................................................................................................................291.000.00-1.00---------------------------
...................................................ATGGGGCTTCACCATGTTGGTCAGGCCG...........................................................................................................................................................................281.000.001.00----------------------------
......................................ATTTTTAGTAGAGATGGGGCTGCCA...........................................................................................................................................................................................251.000.00-1.00---------------------------
.......................................TTTTTAGTAGAGATGGGGCTTCACGGTG.......................................................................................................................................................................................281.000.00-1.00---------------------------
.....................................TATTTTTAGTAGAGATGGGGCTTCACTACG.......................................................................................................................................................................................301.000.00---1.00-------------------------
............................................AGTAGAGATGGGGCTTCACCCAG.......................................................................................................................................................................................231.000.00-1.00---------------------------
.....................................TATTTTTAGTAGAGATGGGGCCCCG............................................................................................................................................................................................251.000.00-1.00---------------------------
..........................................TTAGTAGAGATGGGGCTTCACCATCC......................................................................................................................................................................................261.000.001.00----------------------------
............................................AGTAGAGATGGGGCTTCACCTG........................................................................................................................................................................................221.000.001.00----------------------------
..............................................................................................................................AATGCTGGGATTACAGGCGAGTC.....................................................................................................231.000.00-1.00---------------------------
.....................................TATTTTTAGTAGAGATGGGGCTTCACCATGCTAG...................................................................................................................................................................................341.000.00--------------------------1.00--
..................................................................................................AAGTGATCTGCCCACCTTGGCCTCGA..............................................................................................................................261.000.001.00----------------------------
.................................TTTGTATTTTTAGTAGAGATGGGGCTTGACC..........................................................................................................................................................................................311.000.00-1.00---------------------------
...ACAGGCGTGTGTCATCATT....................................................................................................................................................................................................................................191.000.00----------------1.00------------
.............................................................................................ACCTCAAGTGATCTGAAAA..........................................................................................................................................191.000.00----1.00------------------------
......................CCCGGCTAATTTTTGTATTTAGGA............................................................................................................................................................................................................241.000.00---------------1.00-------------
...................................................................................................AGTGATCTGCCCACCTTGGAA..................................................................................................................................211.000.00----1.00------------------------
.........................................................................................GCTGACCTCAAGTGATCTG..............................................................................................................................................1901.001.00----------1.00------------------
.......................................................................................................................................................................................GATCTGATCCTGGACAGA.................................................181.000.00--------------------1.00--------
...........................................TAGTAGAGATGGGGCTTCACCACGC......................................................................................................................................................................................251.000.00-1.00---------------------------
.....................................TATTTTTAGTAGAGATGGGGCTTCACCACC.......................................................................................................................................................................................301.000.00---1.00-------------------------
...........................................TAGTAGAGATGGGGCTTCACAGGG.......................................................................................................................................................................................241.000.00-1.00---------------------------
............................................AGTAGAGATGGGGCTTCACCATGTTGTCT.................................................................................................................................................................................291.000.001.00----------------------------
.................................TTTGTATTTTTAGTAGAGATGGGGCTACTT...........................................................................................................................................................................................301.000.001.00----------------------------
...................................................................................................AGTGATCTGCCCACCTTGGCCTCCCAAGACT........................................................................................................................311.000.001.00----------------------------
..........................................TTAGTAGAGATGGGGCTGCCA...........................................................................................................................................................................................211.000.001.00----------------------------
.....................................................................................................TGATCTGCCCACCTTGGCCTCTAT.............................................................................................................................241.000.00-----------------------1.00-----
..................................................................................................................................................................................................................................AGGTACGCCTGATTGAGG......1811.001.00-------------1.00---------------
.................................................................TGTTGGTCAGGCTGGTCACTCTG..................................................................................................................................................................231.000.00------------------------1.00----
........................................TTTTAGTAGAGATGGGGCTCGCC...........................................................................................................................................................................................231.000.001.00----------------------------
...............................................................................................................................ATGCTGGGATTACAGGCGAGCT.....................................................................................................221.000.001.00----------------------------
..........................................TTAGTAGAGATGGGGCTTCACCCTGC......................................................................................................................................................................................261.000.001.00----------------------------
...............................................................................................................................ATGCTGGGATTACAGGCGACCC.....................................................................................................221.000.00-1.00---------------------------
...........................................TAGTAGAGATGGGGCTTCACCATGCCAG...................................................................................................................................................................................281.000.001.00----------------------------
.................................................AGATGGGGCTTCACCATGTTGGTCAGGCTAG..........................................................................................................................................................................311.000.001.00----------------------------
............................................AGTAGAGATGGGGCTTCACCCCG.......................................................................................................................................................................................231.000.00-1.00---------------------------
........................................TTTTAGTAGAGATGGGGCTTCAGCGT........................................................................................................................................................................................261.000.001.00----------------------------
.............................................................ACCATGTTGGTCAGGCTGGTATA......................................................................................................................................................................231.000.00-------------------------1.00---
.................................................AGATGGGGCTTCACCATGTTGGTGAG...............................................................................................................................................................................261.000.001.00----------------------------
.....................................TATTTTTAGTAGAGATGGGGCTCGCC...........................................................................................................................................................................................261.000.001.00----------------------------
.................................................AGATGGGGCTTCACCATGTTGGTCAGGCCG...........................................................................................................................................................................301.000.00---1.00-------------------------
...............................................AGAGATGGGGCTTCACCATGTTGGTTGCG..............................................................................................................................................................................291.000.00---1.00-------------------------
..................................................................................................................................................................................................................................AGGTACGCCTGATTGAGGAC....2011.001.00-----------1.00-----------------
..............................................................................................................................AATGCTGGGATTACAGGCGCGC......................................................................................................221.000.001.00----------------------------
........................................TTTTAGTAGAGATGGGGCTTCACGTT........................................................................................................................................................................................261.000.00-1.00---------------------------

Antisense strand
ACTACAGGCGTGTGTCATCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGCTTCACCATGTTGGTCAGGCTGGTCACAAACTGCTGACCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCATCGTGTTCGGCCAGATCTTTCATTTTCTTATGATCTGATCCTGGACAGGGGGAACCTGGGTGCCCTGCGAGTGAAGGTACGCCTGATTGAGGACCGCG
.............................................................................................................................................(((....)))....(((((((.((((((..............))))))...)))))))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189786GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
.......................................................................................CTGCTGACCTCAAGTGATCTCT............................................................................................................................................. 221.000.00--------1.00--------------------
........................................................CCAGCCTGACCAACATGGTGAAGC.......................................................................................................................................................................... 2401.001.00------1.00----------------------
.................................................................................................................................................TGAGCCATCGTGTTCTGGA...................................................................................... 191.000.00-------------------1.00---------
..................................................................GTTGGTCAGGCTGGTCAGGAG................................................................................................................................................................... 211.000.00-1.00---------------------------
....................CGCCCGGCTAATTTTTGAGGT................................................................................................................................................................................................................. 211.000.00----------------------1.00------
..........................................................................................................TGCCCACCTTGGCCTCCCACTGC......................................................................................................................... 231.000.001.00----------------------------
...............................................................................................................................ATGCTGGGATTACAGGCGTGAGAGA.................................................................................................. 251.000.00---------1.00-------------------
...............................................................................................................................ATGCTGGGATTACAGGCGTGAGA.................................................................................................... 231.000.00------1.00----------------------
.....................................................GGGGCTTCACCATGTTGGTCATCT............................................................................................................................................................................. 241.000.001.00----------------------------
.............................................................................................................................AAATGCTGGGATTACAGGCGTGAAAT................................................................................................... 261.000.00-----------------1.00-----------
....................................................TGGGGCTTCACCATGTTGGTCACTT............................................................................................................................................................................. 251.000.00--------1.00--------------------
..............................................................................................CCTCAAGTGATCTGCCCACCTGGG.................................................................................................................................... 241.000.001.00----------------------------
......................................................................................................................................GATTACAGGCGTGAGCCATGG............................................................................................... 211.000.00-1.00---------------------------
...............................................................................................................................................................................................................TCGCAGGGCACCCAG............................ 1550.200.20----------------------------0.20