| (2) BRAIN | (3) BREAST | (12) CELL-LINE | (2) CERVIX | (1) OTHER | (1) SKIN | (1) XRN.ip |
| GGAAGGTAGTCTATTTCTTTAAAATTTTTAGATCTTTACATTTTTTACTAAGACATTAACCTATGTAGTAAAAGTGTTTTATCCTGAAACTGTAAACCATAATTTTAAATATATTATCTGTAAACTTATTGTTTCCAATTTAAGGACTGATCAGCTTTACAAATTCTTTTTTCTTTTCCTAAAAAATAAAATAAACACAGTTTCCAACCACAGCTACAAAAATTTCTCCCAAAGAAGAAGAGAGAAAAGA ......................................................................................................................((((((((.(((...(((.......)))..))).)).))))))......................................................................................... .............................................................................................................110...................................................................180.................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR029130(GSM416759) DLD2. (cell line) | SRR040029(GSM532914) G026T. (cervix) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189782 | SRR189785 | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR343335 | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR040006(GSM532891) G601N. (cervix) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTTTTG.......................................................................... | 22 | 95.00 | 0.00 | 29.00 | 21.00 | 24.00 | 20.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTTTG........................................................................... | 21 | 32.00 | 0.00 | 11.00 | 11.00 | 4.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTTG............................................................................ | 20 | 7.00 | 0.00 | 2.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................TTTTTACTAAGACATTATG.............................................................................................................................................................................................. | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTTTG........................................................................ | 24 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTTTTG....................................................................... | 25 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTTCTTTTCCTAAAACG................................................................ | 18 | 2.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTG............................................................................. | 19 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................CAGCTTTACAAATTCTTT................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTTTA........................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................AGGACTGATCAGCTTTACAAA....................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................................................................................................................................................................CTTTTTTCTTTTCCTAAATTG................................................................ | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTTG......................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................AGCTACAAAAATTTCTCCC.................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTG.......................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTCTTG............................................................................ | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................CAAATTCTTTTTTCTTTCTTG...................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................AATTCTTTTTTCTTTTGCTG..................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................AATTCTTTTTTCTTTTCCTAAG................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..............................................................................................................................................AGGACTGATCAGCTTTACAAATTCTT.................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTCTTG........................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTCTTG....................................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................TATCTGTAAACTTATAATG..................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................AATTCTTTTTTCTTTTCGTT..................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................TTCCAACCACAGCTACAAAAATTTCTCCCAAA................. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................AATTCTTTTTTCTTTTCCTAATAAG................................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................TTTTTTACTAAGACATTTTTT............................................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .......................................................................................................................................................CAGCTTTACAAATTCTTTGA............................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................CTTTACAAATTCTTTTTTCTG........................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................TCTCCCAAAGAAGAAGACGA...... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TTTCCTAAAAAATAAAATAA........................................................ | 20 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| GGAAGGTAGTCTATTTCTTTAAAATTTTTAGATCTTTACATTTTTTACTAAGACATTAACCTATGTAGTAAAAGTGTTTTATCCTGAAACTGTAAACCATAATTTTAAATATATTATCTGTAAACTTATTGTTTCCAATTTAAGGACTGATCAGCTTTACAAATTCTTTTTTCTTTTCCTAAAAAATAAAATAAACACAGTTTCCAACCACAGCTACAAAAATTTCTCCCAAAGAAGAAGAGAGAAAAGA ......................................................................................................................((((((((.(((...(((.......)))..))).)).))))))......................................................................................... .............................................................................................................110...................................................................180.................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | SRR029130(GSM416759) DLD2. (cell line) | SRR040029(GSM532914) G026T. (cervix) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189782 | SRR189785 | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR343335 | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR040006(GSM532891) G601N. (cervix) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................TCAGCTTTACAAATTCTTTATC.............................................................................. | 22 | 8.00 | 0.00 | - | - | - | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................TCAGCTTTACAAATTCTTATC............................................................................... | 21 | 5.00 | 0.00 | - | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................AAAGAATTTGTAAAGCTGA................................................................................. | 19 | 1 | 4.00 | 4.00 | - | - | - | - | - | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TCAGCTTTACAAATTCTTA................................................................................. | 19 | 3.00 | 0.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................AAGAATTTGTAAAGCTGA.................................................................................. | 18 | 1 | 3.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................................................................TCAGCTTTACAAATTCTTTAA............................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................TCAGCTTTACAAATTCTTAA................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..................................................................AGTAAAAGTGTTTTAGCTC..................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................AGTAAAAGTGTTTTATCCC..................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................TCAGCTTTACAAATTCTTTA................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................GAAACTGTAAACCATCATC.................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................AAACTGTAAACCATAATA.................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |