ID: uc010suc.1_intron_15_0_chr12_80203791_r.3p
GENE: (9)
chr12:80203741-80203990-


(2)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(1)
OTHER
(1)
SKIN
(1)
XRN.ip

Sense strand
GGAAGGTAGTCTATTTCTTTAAAATTTTTAGATCTTTACATTTTTTACTAAGACATTAACCTATGTAGTAAAAGTGTTTTATCCTGAAACTGTAAACCATAATTTTAAATATATTATCTGTAAACTTATTGTTTCCAATTTAAGGACTGATCAGCTTTACAAATTCTTTTTTCTTTTCCTAAAAAATAAAATAAACACAGTTTCCAACCACAGCTACAAAAATTTCTCCCAAAGAAGAAGAGAGAAAAGA
......................................................................................................................((((((((.(((...(((.......)))..))).)).)))))).........................................................................................
.............................................................................................................110...................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR189785GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040006(GSM532891)
G601N. (cervix)
..........................................................................................................................................................CTTTACAAATTCTTTTTTTTTG..........................................................................2295.000.0029.0021.0024.0020.00---------1.00-----------
..........................................................................................................................................................CTTTACAAATTCTTTTTTTTG...........................................................................2132.000.0011.0011.004.006.00---------------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTTG............................................................................207.000.002.005.00-----------------------
.........................................TTTTTACTAAGACATTATG..............................................................................................................................................................................................192.000.00------------2.00------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTTTG........................................................................242.000.001.001.00-----------------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTTTTG.......................................................................252.000.001.00--1.00---------------------
........................................................................................................................................................................TTTTCTTTTCCTAAAACG................................................................182.000.00-1.00-------------------1.00---
..........................................................................................................................................................CTTTACAAATTCTTTTTTG.............................................................................192.000.001.001.00-----------------------
.......................................................................................................................................................CAGCTTTACAAATTCTTT.................................................................................1811.001.00------1.00------------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTTTA...........................................................................211.000.001.00------------------------
..............................................................................................................................................AGGACTGATCAGCTTTACAAA.......................................................................................2111.001.00-----------------1.00-------
.....................................................................................................................................................................CTTTTTTCTTTTCCTAAATTG................................................................211.000.00-1.00-----------------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTTG.........................................................................231.000.001.00------------------------
...................................................................................................................................................................................................................AGCTACAAAAATTTCTCCC....................1911.001.00--------1.00----------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTG..........................................................................221.000.001.00------------------------
..........................................................................................................................................................CTTTACAAATTCTTTTCTTG............................................................................201.000.00-1.00-----------------------
...............................................................................................................................................................CAAATTCTTTTTTCTTTCTTG......................................................................211.000.001.00------------------------
.................................................................................................................................................................AATTCTTTTTTCTTTTGCTG.....................................................................201.000.00-----------1.00-------------
.................................................................................................................................................................AATTCTTTTTTCTTTTCCTAAG...................................................................221.000.00-------------------1.00-----
..............................................................................................................................................AGGACTGATCAGCTTTACAAATTCTT..................................................................................2611.001.00-----------------------1.00-
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTCTTG........................................................................241.000.001.00------------------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTTCTTG.......................................................................251.000.001.00------------------------
..................................................................................................................TATCTGTAAACTTATAATG.....................................................................................................................191.000.00---------------1.00---------
.................................................................................................................................................................AATTCTTTTTTCTTTTCGTT.....................................................................201.000.00-----------1.00-------------
.........................................................................................................................................................................................................TTCCAACCACAGCTACAAAAATTTCTCCCAAA.................3211.001.00--------------1.00----------
.................................................................................................................................................................AATTCTTTTTTCTTTTCCTAATAAG................................................................251.000.00-1.00-----------------------
........................................TTTTTTACTAAGACATTTTTT.............................................................................................................................................................................................211.000.00------------------1.00------
.......................................................................................................................................................CAGCTTTACAAATTCTTTGA...............................................................................2011.001.00------1.00------------------
..........................................................................................................................................................CTTTACAAATTCTTTTTTCTG...........................................................................211.000.001.00------------------------
................................................................................................................................................................................................................................TCTCCCAAAGAAGAAGACGA......201.000.00--------1.00----------------
..............................................................................................................................................................................TTTCCTAAAAAATAAAATAA........................................................2030.330.33------------------------0.33

Antisense strand
GGAAGGTAGTCTATTTCTTTAAAATTTTTAGATCTTTACATTTTTTACTAAGACATTAACCTATGTAGTAAAAGTGTTTTATCCTGAAACTGTAAACCATAATTTTAAATATATTATCTGTAAACTTATTGTTTCCAATTTAAGGACTGATCAGCTTTACAAATTCTTTTTTCTTTTCCTAAAAAATAAAATAAACACAGTTTCCAACCACAGCTACAAAAATTTCTCCCAAAGAAGAAGAGAGAAAAGA
......................................................................................................................((((((((.(((...(((.......)))..))).)).)))))).........................................................................................
.............................................................................................................110...................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR189785GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040006(GSM532891)
G601N. (cervix)
......................................................................................................................................................TCAGCTTTACAAATTCTTTATC.............................................................................. 228.000.00----8.00--------------------
......................................................................................................................................................TCAGCTTTACAAATTCTTATC............................................................................... 215.000.00----5.00--------------------
......................................................................................................................................................AAAGAATTTGTAAAGCTGA................................................................................. 1914.004.00-----2.001.00--1.00---------------
......................................................................................................................................................TCAGCTTTACAAATTCTTA................................................................................. 193.000.00-------3.00-----------------
......................................................................................................................................................AAGAATTTGTAAAGCTGA.................................................................................. 1813.003.00-----1.00---1.00------------1.00--
......................................................................................................................................................TCAGCTTTACAAATTCTTTAA............................................................................... 211.000.00-----1.00-------------------
......................................................................................................................................................TCAGCTTTACAAATTCTTAA................................................................................ 201.000.00----------------1.00--------
..................................................................AGTAAAAGTGTTTTAGCTC..................................................................................................................................................................... 191.000.00----------1.00--------------
..................................................................AGTAAAAGTGTTTTATCCC..................................................................................................................................................................... 191.000.00----------1.00--------------
......................................................................................................................................................TCAGCTTTACAAATTCTTTA................................................................................ 201.000.00-----1.00-------------------
.....................................................................................GAAACTGTAAACCATCATC.................................................................................................................................................. 191.000.00-------------1.00-----------
......................................................................................AAACTGTAAACCATAATA.................................................................................................................................................. 181.000.00--------------------1.00----