ID: uc010stv.1_intron_1_0_chr12_72665943_r.3p
GENE: (1)
chr12:72665893-72666142-


(3)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(20)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(26)
SKIN 		(1)
TESTES

Sense strand
CACCCGGCGGCGGGGCACATGCTGCCCCCGCCCCTGCGCGCCTGCGGCTCCCGGCTCTCCCTCCCCTGCGCCGCGCTCTCGCCTCGCTTTCCGCGGGAGCCTTCCAACCGGTTCTCGGCTAGGGAGAAGGACGGGAGCGGTGGGAAGAGCGAGGGTGTAGAGAGGGAAGTTAGGGCTTTCGCTTTCTCCCCCCACTCCAGCGGCGGCGTTCGGTCCTCTGGGTGGAATGTGCTCGCAGCAGCAGTGACGG
................................................................(((((....(((((((((((...(((((.((((((((........))))))))....))))).))).)))))))))))))..........................................................................................................
...............................................................64....................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
................................................................................................................................GGACGGGAGCGGTGGGGG........................................................................................................18210.003.50--2.00--1.001.00-1.00-------------------1.001.00------1.00--1.00------------------------1.00--------
................................................................................................................................GGACGGGAGCGGTGGGGGC.......................................................................................................1928.003.50--1.00---1.00-------1.001.00-------1.00-1.001.00------------------------------1.00---------------
.ACCCGGCGGCGGGGCCGGC......................................................................................................................................................................................................................................197.000.00-------1.00----------1.00--1.001.00-------------------1.00------------------1.00-------1.00---
................................................................................................................................GGACGGGAGCGGTGGGG.........................................................................................................1726.003.50---2.001.00--------1.00-----------------1.00-----1.00-----------------------------------
.................................................................................................................................GACGGGAGCGGTGGGGG........................................................................................................1725.000.50-3.00------1.00-------------------------1.00--------------------------------------
.......................................GCCTGCGGCTCCCGGGCG.................................................................................................................................................................................................184.000.003.00-----------------------------------------------------------------1.00------
.ACCCGGCGGCGGGGCCGG.......................................................................................................................................................................................................................................184.000.001.00---------1.00----------------1.00-------------------------1.00-------------------
................................................................................................................................GGACGGGAGCGGTGGG..........................................................................................................1623.503.50--0.500.50----------0.500.50-----------------1.00------------------------------------0.50--
................................................................................................................................GGACGGGAGCGGTGGGGGCG......................................................................................................2023.003.50-----1.00-----1.00-------------------------------1.00-----------------------------
...CCGGCGGCGGGGCACGGT.....................................................................................................................................................................................................................................182.000.00----1.00---------------------------------------------------1.00----------------
..CCCGGCGGCGGGGCACGGT.....................................................................................................................................................................................................................................192.000.00----------------------------------------1.00---1.00----------------------------
.ACCCGGCGGCGGGGCGGCG......................................................................................................................................................................................................................................192.000.002.00------------------------------------------------------------------------
....................................................................CGCCGCGCTCTCGCCCTT....................................................................................................................................................................181.000.00------------------------------1.00------------------------------------------
.................................................................................................................................................AGAGCGAGGGTGTAGGT........................................................................................171.000.00----------------------------------------------1.00--------------------------
...CCGGCGGCGGGGCACGGTC....................................................................................................................................................................................................................................191.000.00----------------------------------------------------1.00--------------------
................................................................................................................................GGACGGGAGCGGTGGGAGCGG.....................................................................................................211.000.00---------------------------------------------1.00---------------------------
.............................................................................................................................................................................................CCCCACTCCAGCGGCGGCGTTCGGGCC..................................271.000.00----------------------------------------------------------1.00--------------
..............................................................................................................................AAGGACGGGAGCGGTGGGAAGAG.....................................................................................................2311.001.00--------------------------------1.00----------------------------------------
.........................................................................................................................GGGAGAAGGACGGGACGGA..............................................................................................................191.000.00---------------------------------------------------1.00---------------------
.ACCCGGCGGCGGGGCAGG.......................................................................................................................................................................................................................................181.000.00--------------------1.00----------------------------------------------------
........................................................................................................................................................................................................................TCTGGGTGGAATGTGCTCGCAGCAGC........2611.001.00--------------------------------------------------1.00----------------------
.................................................................................................................................................................................TTCGCTTTCTCCCCCCACTCC....................................................2111.001.00------------1.00------------------------------------------------------------
....................................................................................................................................GGGAGCGGTGGGAAGAGCGA..................................................................................................2011.001.00------------------------1.00------------------------------------------------
.................................................................................................................................................................................TTCGCTTTCTCCCCCCACTCCAGA.................................................241.000.00------------------------------------------------------1.00------------------
.................................................................................................................................GACGGGAGCGGTGGGGGG.......................................................................................................1821.000.50-----------------------------------------------------------1.00-------------
..............................................................................................................................................................................................................................TGGAATGTGCTCGCAGCAGCAGTGAC..2611.001.00-----------------------------------------------1.00-------------------------
..................................................................................................................................................................................TCGCTTTCTCCCCCCACTCCAGT.................................................231.000.00------------1.00------------------------------------------------------------
...CCGGCGGCGGGGCACG.......................................................................................................................................................................................................................................161.000.00-------------------1.00-----------------------------------------------------
.......................................................................................................................................................................................................................CTCTGGGTGGAATGTGCTCGC..............2111.001.00-----------------------------------1.00-------------------------------------
............................................................................................................................................TGGGAAGAGCGAGGGTGTAG..........................................................................................2011.001.00-----------1.00-------------------------------------------------------------
....CGGCGGCGGGGCACAGGC....................................................................................................................................................................................................................................181.000.00--------------------------------------------------------------1.00----------
.....GGCGGCGGGGCACATGG....................................................................................................................................................................................................................................171.000.00----------------1.00--------------------------------------------------------
.ACCCGGCGGCGGGGCCCGC......................................................................................................................................................................................................................................191.000.00---------1.00---------------------------------------------------------------
.ACCCGGCGGCGGGGCCG........................................................................................................................................................................................................................................171.000.00-------1.00-----------------------------------------------------------------
.................................................................................................................................GACGGGAGCGGTGGGGGC.......................................................................................................1821.000.50-------------1.00-----------------------------------------------------------
...................................................................................................................CGGCTAGGGAGAAGGACGG....................................................................................................................1911.001.00-------------------------------------------------1.00-----------------------
.ACCCGGCGGCGGGGCCGGG......................................................................................................................................................................................................................................191.000.00----------1.00--------------------------------------------------------------
...........................................................................................CGCGGGAGCCTTCCAG...............................................................................................................................................161.000.00-----------------1.00-------------------------------------------------------
..................................................................................................................................................................................TCGCTTTCTCCCCCCACTCCA...................................................2111.001.00------------------------------------------------1.00------------------------
.................................................................................................................................GACGGGAGCGGTGGGGA........................................................................................................1721.000.50-1.00-----------------------------------------------------------------------
.....................................................................................................................GCTAGGGAGAAGGACGGGA..................................................................................................................1911.001.00-----------------------------------------------------------------1.00-------
.................................................................................................................................GACGGGAGCGGTGGG..........................................................................................................1520.500.50-----------------------------------------------------------------------0.50-
......................................................................................................................................................GAGGGTGTAGAGAGGG....................................................................................1630.330.33------------------------------------------------------------------------0.33

Antisense strand
CACCCGGCGGCGGGGCACATGCTGCCCCCGCCCCTGCGCGCCTGCGGCTCCCGGCTCTCCCTCCCCTGCGCCGCGCTCTCGCCTCGCTTTCCGCGGGAGCCTTCCAACCGGTTCTCGGCTAGGGAGAAGGACGGGAGCGGTGGGAAGAGCGAGGGTGTAGAGAGGGAAGTTAGGGCTTTCGCTTTCTCCCCCCACTCCAGCGGCGGCGTTCGGTCCTCTGGGTGGAATGTGCTCGCAGCAGCAGTGACGG
................................................................(((((....(((((((((((...(((((.((((((((........))))))))....))))).))).)))))))))))))..........................................................................................................
...............................................................64....................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.........................................................................................................................................CGGTGGGAAGAGCGAAAA............................................................................................... 181.000.00-------------------------------------------------------1.00-----------------
...................TGCTGCCCCCGCCCCTGGCC................................................................................................................................................................................................................... 201.000.00------------------------------------------------------------1.00------------
..........................................................CCCTCCCCTGCGCCGCGGG............................................................................................................................................................................. 191.000.00-------------------------------------------------------------------1.00-----
............................................................................................CGAGAACCGGTTGGAAGGCTCCCGC..................................................................................................................................... 2511.001.00---------1.00---------------------------------------------------------------
...................................................................................................................................CGGGAGCGGTGGGAACCA..................................................................................................... 181.000.00--------------------------------------------------------------------1.00----
...............................................................................................................................AGGACGGGAGCGGTGGGCT........................................................................................................ 191.000.00---------------------------------------------------------------1.00---------
..................................................CCGGCTCTCCCTCCCCCGGG.................................................................................................................................................................................... 201.000.00-----------------------------------------1.00-------------------------------
..........................................................................................................................GGAGAAGGACGGGAGTCT.............................................................................................................. 181.000.00--------------------------------------1.00----------------------------------