ID: uc010sqi.1_intron_2_0_chr12_56626657_f.5p
GENE: (3)
chr12:56626607-56626856+


(1)
AGO1.ip 		(1)
BRAIN 		(3)
BREAST 		(9)
CELL-LINE 		(1)
HELA 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(1)
SKIN

Sense strand
ACAGGCTTCTGTTGCTGGACCACTCATTGGCTGACCACCTGAATGAGGATGTGAGTCTGACGGTCTCTAGAGGGGAAGGAGCCATGGGATTAGATGGCCTGAAATGTTTAAATAATCAGTAGTTTTTTGTTTTGTTTTGTTTTTAAATCCCAACGTGGACCAAGCGTGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGG
...................................................................................((..(((.((((...((((.............))))..))))...)))..))...................................................................................................................
.................................................................................82................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCTGG........................................................................................................2618.000.0017.001.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTCGG........................................................................................................2615.000.0012.003.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTTGGTG........................................................................................................294.000.004.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCA..........................................................................................................243.000.00-3.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTTGGC.......................................................................................................273.000.003.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCTCT........................................................................................................263.000.003.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCTC.........................................................................................................253.000.00-3.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTCGGT.......................................................................................................273.000.001.002.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCCGG........................................................................................................263.000.00-3.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGCTTC...........................................................................................................262.000.002.00--------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTTCG..........................................................................................................272.000.002.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCGAG........................................................................................................262.000.002.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCC..........................................................................................................242.000.001.001.00-------------------
.............................GCTGACCACCTGAATGAGGATTG......................................................................................................................................................................................................232.000.00-------2.00-------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCGAG.........................................................................................................252.000.001.001.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTTC...........................................................................................................262.000.00-2.00-------------------
.......................................................................................................................................................................................AATCCCAACACTTTGGGAGGCCGAGGACC......................................292.000.002.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCTTC.........................................................................................................252.000.001.001.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTTCC.........................................................................................................262.000.002.00--------------------
............................GGCTGACCACCTGAATGAGGATTGT.....................................................................................................................................................................................................252.000.00--2.00------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTCGAG.........................................................................................................282.000.00-2.00-------------------
...................................................................................................................TCAGTAGTTTTTTGTTTTGTTTTGTTTTTCGG.......................................................................................................322.000.002.00--------------------
...........................TGGCTGACCACCTGAATGAGGA.........................................................................................................................................................................................................2212.002.00----2.00----------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTCTGG.......................................................................................................272.000.001.001.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTCGC.........................................................................................................262.000.00-2.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCTAC.........................................................................................................252.000.002.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCGC.........................................................................................................252.000.001.001.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTCTCG..........................................................................................................272.000.002.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTTTCG.......................................................................................................271.000.00------1.00--------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCGG.........................................................................................................251.000.001.00--------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTATT.........................................................................................................261.000.001.00--------------------
...............................TGACCACCTGAATGAGGA.........................................................................................................................................................................................................1811.001.00---1.00-----------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCCG..........................................................................................................241.000.00-1.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTTCTGG.......................................................................................................281.000.00-1.00-------------------
.........................ATTGGCTGACCACCTGAATGAGG..........................................................................................................................................................................................................2311.001.00--1.00------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTTTGAC......................................................................................................281.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCGTC........................................................................................................261.000.001.00--------------------
..........................................................................................................................TTTTTTGTTTTGTTTTGTTGCTG.........................................................................................................231.000.00-1.00-------------------
................................GACCACCTGAATGAGGATT.......................................................................................................................................................................................................191.000.00--1.00------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTCG...............................................................................................................221.000.001.00--------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTTTTCGG.......................................................................................................301.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCCGC.........................................................................................................251.000.001.00--------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTTCCTT.......................................................................................................281.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTTTGGC......................................................................................................281.000.001.00--------------------
..............................................GGATGTGAGTCTGACGGTCTCTA.....................................................................................................................................................................................2311.001.00--1.00------------------
..AGGCTTCTGTTGCTGGACCACT..................................................................................................................................................................................................................................2211.001.00---1.00-----------------
..........................TTGGCTGACCACCTGAATGAGGATTGT.....................................................................................................................................................................................................271.000.00--1.00------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCTTT.........................................................................................................251.000.00-1.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTCTG.............................................................................................................241.000.00-1.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCTCC........................................................................................................261.000.00-1.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTTTCTGG.......................................................................................................301.000.00-1.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTCTTA.........................................................................................................261.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTGGT..........................................................................................................241.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTTGCTT......................................................................................................281.000.00-1.00-------------------
........................CATTGGCTGACCACCTGAATGAGGAT........................................................................................................................................................................................................2611.001.00---------------1.00-----
...........................TGGCTGACCACCTGAATGAGGAT........................................................................................................................................................................................................2311.001.00----1.00----------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTTATTG.......................................................................................................281.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCC...........................................................................................................231.000.00-1.00-------------------
......................................................................................GGATTAGATGGCCTGAAATGTTT.............................................................................................................................................2311.001.00--1.00------------------
...........................TGGCTGACCACCTGAATGAGGATT.......................................................................................................................................................................................................2411.001.00--1.00------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTCGAT.........................................................................................................251.000.00-1.00-------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTGTTT..............................................................................................................231.000.00-------------------1.00-
.......................................................................................................................TAGTTTTTTGTTTTGTTTCC...............................................................................................................201.000.001.00--------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTCT...............................................................................................................201.000.00-1.00-------------------
..........GTTGCTGGACCACTCATTGGCTGACC......................................................................................................................................................................................................................2611.001.00---1.00-----------------
.................................................................................................................................................AATCCCAACGTGGACTCCC......................................................................................191.000.00--------1.00------------
.........................................................................................................................GTTTTTTGTTTTGTTTTGTTGCTG.........................................................................................................241.000.00-1.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTCTTT.........................................................................................................261.000.001.00--------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTCTGC........................................................................................................261.000.001.00--------------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTTTTC............................................................................................................251.000.00-1.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTCG..........................................................................................................251.000.00-1.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTCGAC.......................................................................................................271.000.00-1.00-------------------
.......................................................................................................................TAGTTTTTTGTTTTGTTTTGTTTCTCT........................................................................................................271.000.00-1.00-------------------
...........................................................................................................................TTTTTGTTTTGTTTTGTTTTTAAACG.....................................................................................................261.000.00------1.00--------------
.....................................................................................................................AGTAGTTTTTTGTTTTGTTTTGTTTTCCGG.......................................................................................................301.000.00-1.00-------------------
........................................................................................................................AGTTTTTTGTTTTGTTTTGTTTTTATTCC.....................................................................................................291.000.00-1.00-------------------
.........................................................................................................................GTTTTTTGTTTTGTTTTGTTTTCCGC.......................................................................................................261.000.001.00--------------------
...................................................................................................................TCAGTAGTTTTTTGTTTTGTTTTGTTTTGTCT.......................................................................................................321.000.001.00--------------------
..........................................................................................................................TTTTTTGTTTTGTTTTGTTTTTAAAT......................................................................................................2690.110.11------0.11--------------

Antisense strand
ACAGGCTTCTGTTGCTGGACCACTCATTGGCTGACCACCTGAATGAGGATGTGAGTCTGACGGTCTCTAGAGGGGAAGGAGCCATGGGATTAGATGGCCTGAAATGTTTAAATAATCAGTAGTTTTTTGTTTTGTTTTGTTTTTAAATCCCAACGTGGACCAAGCGTGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGG
...................................................................................((..(((.((((...((((.............))))..))))...)))..))...................................................................................................................
.................................................................................82................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
............................................................................................................................................................................CTCACGCCTGTAATCCCAACAAA....................................................... 233.000.00-------------1.00--1.00-1.00--
............................................................................................................................................................................CTCACGCCTGTAATCCCAACAA........................................................ 222.000.00------------1.00-1.00------
................................................................................................................................................................................CGCCTGTAATCCCAACACTTTAGA.................................................. 241.000.00-----1.00---------------
................................................................................................................................................................................CGCCTGTAATCCCAACACTTTGGATA................................................ 261.000.00--1.00------------------
................................................................................................................................................................................CGCCTGTAATCCCAACACTTAAC................................................... 231.000.00---1.00-----------------
................................................................................................................................................................................CGCCTGTAATCCCAACAAGCT..................................................... 211.000.00-1.00-------------------
......................................................................................................................................................................................................GGAGGCCGAGGTGGGTGGATCACCTGAGGTAG.................... 321.000.001.00--------------------
................................................................................................................................................................................CGCCTGTAATCCCAAACCC....................................................... 191.000.001.00--------------------
............................................................................................................................................................................CTCACGCCTGTAATCCCAACAA........................................................ 221.000.00---------1.00-----------
...........................................................................................................................................GTTGGGATTTAAAAA................................................................................................ 1501.001.00-----1.00---------------
.............................................................................................................................................................................................AACACTTTGGGAGGCCGCTAC........................................ 211.000.00----------1.00----------
..........................................................................................................TTTAAATAATCAGTAGAT.............................................................................................................................. 181.000.00-----------1.00---------
................................................................................................................................................................................CGCCTGTAATCCCAACACTTTGA................................................... 231.000.00-----1.00---------------
..............................................................................................................................................................................CACGCCTGTAATCCCAACATGTG..................................................... 231.000.00--1.00------------------
.............................................................................................................................................................................TCACGCCTGTAATCCCAATCGA....................................................... 221.000.00-----------------1.00---
...................................................................................................................................................................................CTGTAATCCCAACACTTTGGGAGCAGC............................................ 271.000.00--------1.00------------
..............................................................................................................................................................................CACGCCTGTAATCCCAACACTTTC.................................................... 241.000.00-1.00-------------------
..................................................................................................................AAAACAAAACAAAAAACTACTGAT................................................................................................................ 2450.600.60------0.60--------------
.........................................................................................................................................GTTGGGATTTAAAAACA................................................................................................ 1730.330.33--------------------0.33