ID: uc010sqa.1_intron_5_0_chr12_56427106_f.3p
GENE: IKZF4(6)
chr12:56428155-56428404+


(3)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(7)
BRAIN 		(3)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(8)
HEART 		(5)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(1)
OTHER.ip 		(28)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
GGGCTGGGATTGAGTCCTTCTCTAAGATTATAGCCTAGAGTCAGGGAGCAGTCCCACAAAGGACCTGACCCTGCGAAAGTAAATGCCACGTAGTAAATAATGTTACACCCAGCCCCACAGGTAAAAAAACAAAGAAGTAATCCTGAGGAGAGTGTAGGAATTCTCCAAACCCAGCCCTGCTGAGTTCCTGTTCTCCACAGGCGAAAAGCAGATGCGCTTCAGCCTCTCAGACCTCCCCTATGATGTGAAC
..................................................((((......)))).......(((....)))...((...((.((((......))))))...))....((((....................)))).(((((((......)))))))....................................................................................
..................................................51...................................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189782GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040027(GSM532912)
G220T. (cervix)
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCT......................................................................................21152.0052.00-8.003.00-4.001.003.001.002.002.00-1.002.002.002.00---2.00-2.00-1.002.00---1.001.00-1.001.00--1.00-1.00-----1.00---1.00-----1.00-1.00-1.00-1.00--1.00-1.00----------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCTC.....................................................................................22138.0038.0017.001.00-1.00-------1.00---2.002.00--2.00--------1.00----1.00------1.00------1.00--1.00------1.00-1.001.00----------1.00-1.00-1.00--1.00-
...............................................................................................................................................TGAGGAGAGTGTAGGAATT........................................................................................1914.004.00----------1.00------2.00-------1.00------------------------------------------------------
..............................................................................................................................................CTGAGGAGAGTGTAGGAATTCT......................................................................................2214.004.00--1.00----2.00-1.00----------------------------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTC.......................................................................................2014.004.00-1.00-----------------------------------------------1.00-1.00---------------1.00------------
................................................................................................................................................GAGGAGAGTGTAGGAATTCTCC....................................................................................2213.003.00-----------------------------------------1.00------1.00--------------------1.00----------
................................................................................................................................................GAGGAGAGTGTAGGAATTCT......................................................................................2013.003.00-----1.00---------------1.00-----1.00----------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCTCC....................................................................................2313.003.00---------------------------------------------1.00-------1.00----------------1.00---------
..............................................................................................................................................CTGAGGAGAGTGTAGGAATTCTC.....................................................................................2313.003.00-----1.00-------------------------------------1.00------------------------1.00-----------
...............................................................................................................................................TGAGGAGAGTGTAGGAAT.........................................................................................1813.003.00----------------------1.00--------------------------------1.00------1.00-----------------
....................................................................................................................................................AGAGTGTAGGAATTCAAA....................................................................................182.000.00----------------------------------------------------------------1.00-----------1.00---
............................................................................................................................................TCCTGAGGAGAGTGTAGGAAT.........................................................................................2112.002.00-------------------------1.00---------------------------------------------------1.00--
.............................................................................................................................................CCTGAGGAGAGTGTAGGAATTCT......................................................................................2311.001.00----------1.00---------------------------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCTA.....................................................................................2211.0052.00-------------------------------------------------------------------------------1.00
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCTCCAT..................................................................................251.000.00-------------------------------------1.00------------------------------------------
..............................................................................................................................................CTGAGGAGAGTGTAGGAATTCTCC....................................................................................2411.001.00--------------------------1.00-----------------------------------------------------
...........................................................AGGACCTGACCCTGCGC..............................................................................................................................................................................171.000.00--------1.00-----------------------------------------------------------------------
............................................................................................................................................TCCTGAGGAGAGTGTAGGAATTCT......................................................................................2411.001.00-----------------------------------------------------------------1.00--------------
..........................................................................................................ACCCAGCCCCACAGGAGAC.............................................................................................................................191.000.00--------------------------------------------------------------------------1.00-----
................................................................................................................................................GAGGAGAGTGTAGGAATTCTCCA...................................................................................2311.001.00---1.00----------------------------------------------------------------------------
.............................................................................................................................................CCTGAGGAGAGTGTAGGAAT.........................................................................................2011.001.00--------------------------1.00-----------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCA......................................................................................2111.004.00---------------------1.00----------------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCTCCAA..................................................................................2511.001.00---------------------------------------1.00----------------------------------------
............................................................................................................................................TCCTGAGGAGAGTGTAGGAATT........................................................................................2211.001.00------------------------------------------------------------------1.00-------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTAA......................................................................................2111.004.00--------------------------------------1.00-----------------------------------------
..................................................................................................................................................GGAGAGTGTAGGAATTCTC.....................................................................................1911.001.00-----------------------------------1.00--------------------------------------------
............................................................................................................................................TCCTGAGGAGAGTGTAGGAATTC.......................................................................................2311.001.00--------------------------------------------1.00-----------------------------------
..........................................................AAGGACCTGACCCTGCGGAAA...........................................................................................................................................................................211.000.00------------------------1.00-------------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGGAATTCTCA....................................................................................2311.0038.00------------------------1.00-------------------------------------------------------
...............................................................................................................................................TGAGGAGAGTGTAGG............................................................................................1570.140.14-0.14------------------------------------------------------------------------------

Antisense strand
GGGCTGGGATTGAGTCCTTCTCTAAGATTATAGCCTAGAGTCAGGGAGCAGTCCCACAAAGGACCTGACCCTGCGAAAGTAAATGCCACGTAGTAAATAATGTTACACCCAGCCCCACAGGTAAAAAAACAAAGAAGTAATCCTGAGGAGAGTGTAGGAATTCTCCAAACCCAGCCCTGCTGAGTTCCTGTTCTCCACAGGCGAAAAGCAGATGCGCTTCAGCCTCTCAGACCTCCCCTATGATGTGAAC
..................................................((((......)))).......(((....)))...((...((.((((......))))))...))....((((....................)))).(((((((......)))))))....................................................................................
..................................................51...................................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189782GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040027(GSM532912)
G220T. (cervix)
...................................................................................................................CACAGGTAAAAAAACTCTT.................................................................................................................... 191.000.00---1.00----------------------------------------------------------------------------
...................................................................................................................................................GAGAGTGTAGGAATTCTCCAA.................................................................................. 211.000.00---1.00----------------------------------------------------------------------------
...........................................................................................................................AAAAAACAAAGAAGTGAT............................................................................................................. 181.000.00-----------------------------1.00--------------------------------------------------
......................................................................................................................AGGTAAAAAAACAAAGTACG................................................................................................................ 201.000.00-----------------------------1.00--------------------------------------------------
....................................................................................................................................TTCCTACACTCTCCTCAGGATTACTTCT.......................................................................................... 2811.001.00------------------------------------------------------------------------1.00-------
.....................................................................................................................................................GAGTGTAGGAATTCTCCAAGC................................................................................ 211.000.00--------------------------------1.00-----------------------------------------------
...................................................................................................................................................................GCAGGGCTGGGTTTGGA...................................................................... 1740.250.25----------0.25---------------------------------------------------------------------