ID: uc010soh.1_intron_11_0_chr12_53859758_f.3p
GENE: PCBP2(12)
chr12:53860805-53861054+


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(4)
HELA 		(6)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
TESTES

Sense strand
ACCCATTCTATTTCTAACCCTTACCCTTCATATTCTGCCAATCCCCAGGATTGTGATGCAAGCCCCATCCCTACCCTCTGTTGTAGTTTGAGTAGTAGAGTCAATTTTGGGAATCAGGACCTGCATTTTCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGCAGTTGACCAAGCTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGAC
......................................................................................((..((((.((...((...((((..((((((...))).)))..))))...)).))))))..)).....................................................................................................
......................................................................................87............................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040031(GSM532916)
G013T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................TTTTCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGCAG..................................................75122.0022.0017.004.00-----------------------1.00-------------------
...............................................................................................................................TTCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGCAG..................................................73122.0022.0016.005.00----------------1.00--------------------------
..............................................................................................................................TTTCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGCAG..................................................7418.008.00-8.00-------------------------------------------
...........................................................................................GTAGTAGAGTCAATTTTGGGAAT........................................................................................................................................2317.007.00---4.00--3.00--------------------------------------
.......CTATTTCTAACCCTTCATG................................................................................................................................................................................................................................194.000.00-------3.00---------------1.00---------------------
.........................CTTCATATTCTGCCAATCCCCAGGATTGTGA..................................................................................................................................................................................................3113.003.00--3.00------------------------------------------
..............................................................................................................................................................................................................AAGCTGCACCAGTTGGCAATGCA.....................2313.003.00----3.00----------------------------------------
................................................................................................................................TCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGCAG..................................................7213.003.003.00--------------------------------------------
.............................................................................................................................TTTTCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGC....................................................7313.003.00-3.00-------------------------------------------
...........................................................................................................................................................................................................................TGGCAATGCAACAGTCTCA............1922.002.00-----------------1.50---------------------0.50-----
...........................................................................................................................................................................................................ACCAAGCTGCACCAGTTGGCAAT........................2312.002.00-------------2.00-------------------------------
..............................................................................................................................................................................................................AAGCTGCACCAGTTGGCAATG.......................2111.001.00--------------1.00------------------------------
...........................................................................................GTAGTAGAGTCAATTTTGG............................................................................................................................................1911.001.00-----------1.00---------------------------------
...............AACCCTTACCCTTCATATTCTGCCAAT................................................................................................................................................................................................................2711.001.00----------1.00----------------------------------
............................................................................................................................................................................................................CCAAGCTGCACCAGTTGG............................1811.001.00---------------------------1.00-----------------
...............................................................................................................................................................................................................AGCTGCACCAGTTGGCAATGCAAC...................2411.001.00--------1.00------------------------------------
..............................................................................................................................................................................................................AAGCTGCACCAGTTGGC...........................1711.001.00--------------------------------1.00------------
...............................................................................................................................TTCAAATTCGAATGTTTT.........................................................................................................181.000.00--1.00------------------------------------------
..................................................................................................................................................................................................TTGCAGTTGACCAAGCATT.....................................191.000.00-----1.00---------------------------------------
..............................................................................................GTAGAGTCAATTTTGGGAATCAGGACC.................................................................................................................................2711.001.00-------------------------------1.00-------------
..................................................................................................................................................................................................TTGCAGTTGACCAAGCTTT.....................................191.000.00-----1.00---------------------------------------
..........................................................................................................................................................................................................GACCAAGCTGCACCAGTTGGCAATGCAACAG.................3111.001.00----------------1.00----------------------------
............................................................................TCTGTTGTAGTTTGAGTAGTAGAGTCA...................................................................................................................................................2711.001.00--------------1.00------------------------------
..............................................................................................................................................................................................................AAGCTGCACCAGTTGGCAATGCAAC...................2511.001.00---------1.00-----------------------------------
.........................................................................................................................................AATGTGCTTGAGCCCTGGC..............................................................................................1911.001.00----------------------1.00----------------------
..................................................................................................................................................................................................TTGCAGTTGACCAAGCATG.....................................191.000.00-----1.00---------------------------------------
...............................................................................................................................................................................................................AGCTGCACCAGTTGGCAATGCAACA..................2511.001.00---------------------1.00-----------------------
..............................................................................................................................................................................................................AAGCTGCACCAGTTGGCAATGC......................2211.001.00--------------------------1.00------------------
..............................................................................................................................................................................................................................CAATGCAACAGTCTCATTC.........191.000.00---------------------------------1.00-----------
...............................................................................................................................................................................................................AGCTGCACCAGTTGGCAATGC......................2111.001.00--------1.00------------------------------------
....................................................................................................................................................................................CTCCTGTTTCCTCCTTGCAG..................................................2011.001.00-----------1.00---------------------------------
.....................................................................................................................................................................................TCCTGTTTCCTCCTTGCAG..................................................1911.001.00--------------------1.00------------------------
.........................................................................................................................................................................................................TGACCAAGCTGCACCAGTTGGCAATGC......................2711.001.00------------------------1.00--------------------
........................................................................................................................................................................................................................AGTTGGCAATGCAACAGTCTCATTCTCC......281.000.00----------------------------1.00----------------
.............................................................................................................................................................................................................CAAGCTGCACCAGTTGGCAATGCAACA..................2711.001.00---------------1.00-----------------------------
...................................................................................................................AGGACCTGCATTTTCAAATTCG.................................................................................................................2211.001.00----------1.00----------------------------------
...............................................................................................................................................................................................................AGCTGCACCAGTTGGCAATG.......................2011.001.00---------------1.00-----------------------------
......................................................................................................................................................................................................AGTTGACCAAGCTGCACCTGGC..............................221.000.00------------1.00--------------------------------
...........................................................................................................................................................CTCTGTTAAATCTTCTAATGCC.........................................................................2211.001.00-------------------1.00-------------------------
..........................................CCCCAGGATTGTGATGCAAGC...........................................................................................................................................................................................2111.001.00------------------------------1.00--------------
........................................................................................................................................................................................................TTGACCAAGCTGCACCATTT..............................201.000.00-----------------------------1.00---------------
..................................................................................................................................AAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAA.......................................................................4911.001.00-1.00-------------------------------------------
.................................................................................................................................................................................................................CTGCACCAGTTGGCAATGC......................1920.500.50--------------------------------------0.50------
............................................................................................................................................................................................................................GGCAATGCAACAGTCTC.............1720.500.50---------0.50-----------------------------------
................................................................................................................................................................................................................................ATGCAACAGTCTCATTTTCCC.....2120.500.50----------------0.50----------------------------
...................................................................................................................................................................................................................GCACCAGTTGGCAATGCAAC...................2020.500.50-----------------------------------------0.50---
......................................................................................................................................................................................................................CCAGTTGGCAATGCAAC...................1720.500.50------------------------------------0.50--------
........................................................................................................................................................................................................................AGTTGGCAATGCAACAGTCTCATTTTC.......2720.500.50----------0.50----------------------------------
.....................................................................................................................................................................................................................ACCAGTTGGCAATGCAAC...................1820.500.50-----------------------------------0.50---------
.....................................................................................................................................................................................................................ACCAGTTGGCAATGCAACAGT................2120.500.50-------------------------------------0.50-------
.......................................................................................................................................................................................................GTTGACCAAGCTGCACCAGTT..............................2120.500.50------------------------------------------0.50--
.........................................................................................................................................................................................................TGACCAAGCTGCACCAGTTG.............................2020.500.50--------0.50------------------------------------
......................................................................................................................................................................................................................CCAGTTGGCAATGCAACAGTC...............2120.500.50----------------------------------0.50----------
......................................................................................................................................................................................................................CCAGTTGGCAATGCAACAGTCTCATTTTCCC.....3120.500.50---------0.50-----------------------------------
................................................................................................................................................................................................................................ATGCAACAGTCTCATTTTCCCATGAC2620.500.50---------0.50-----------------------------------
..................................................................................................................................................................................................................................GCAACAGTCTCATTTTCC......1830.330.33-------------------------------------------0.33-
......................................................................................................................................................................................................AGTTGACCAAGCTGCACCAG................................2030.330.33--------0.33------------------------------------
...........................................CCCAGGATTGTGATGC...............................................................................................................................................................................................1640.250.25--------------------------------------------0.25

Antisense strand
ACCCATTCTATTTCTAACCCTTACCCTTCATATTCTGCCAATCCCCAGGATTGTGATGCAAGCCCCATCCCTACCCTCTGTTGTAGTTTGAGTAGTAGAGTCAATTTTGGGAATCAGGACCTGCATTTTCAAATTCGAATGTGCTTGAGCCCTGGCTCTGTTAAATCTTCTAATGCCAACCTCCTGTTTCCTCCTTGCAGTTGACCAAGCTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGAC
......................................................................................((..((((.((...((...((((..((((((...))).)))..))))...)).))))))..)).....................................................................................................
......................................................................................87............................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040031(GSM532916)
G013T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
............................................................AGCCCCATCCCTACCCTCTCCC........................................................................................................................................................................ 221.000.00------------1.00--------------------------------
............................................................................................................................................................................................................................CATGGGAAAATGAGACTGTTGCATTGCC.. 2820.500.50----------------------------------------0.50----