ID: uc010snp.1_intron_1_0_chr12_52605941_f
GENE: (2)
chr12:52605891-52606432+


(1)
AGO1.ip
(1)
B-CELL
(2)
BRAIN
(6)
BREAST
(14)
CELL-LINE
(2)
FIBROBLAST
(3)
HEART
(2)
LIVER
(1)
OTHER
(21)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
GTTCTCATCTGAAGAATAGAGTGGGCAAGGCCTTTCTCCTACACACTCAGGTGTCTGATTAGTGAACAGTCACGGTGTCTCCAACTGGGCCCTGAGTTATGGGAGAGGCAAGCCCATGACCCACCAGGCCCCACCAAGAGCCGTGCCACAGCCTGAGGTGGGCTCTCGGTGTTGACCAGCTCTTGGAGTACTTCAGGAGGAGGTGGAGGGACTGGGGAGTTCTAGGAGTGTGTCCATGATAAAGAGCCGCAAACAAGATCCCAGGTCCAAGGCTGCCTCACCTCCCCTGTGACATGGGGTGCTCTCTCAGACCCTTCCAGCTCATTGGGCTTTTGAGCCACCCCTGCGTAGTGGGACCAGGGCCCCCAGGGCTGGGAGGACAGGGAATATGGGGTTGTAGCTTAGGCGTAATGGGGTGAGGACCCCAGGACTCACCCAGCTCTGAAGGTTGCCAGATCTTTGCATCTTACTGTTCATCTTCTGCCTCTGCAGAGCCCTGAATGGGAAGAAATGGGTTCCATGTGCAGCAAGCCAGGAGAGAT
...........................................................................................................................................................................................................................................................................................................................................................................(((((...(((......)))......))))).....((....)).......................................................................................................................................
.........................................................................................................................................................................................................................................................................................................................................................................362...............................................412................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
TAX577579(Rovira)
total RNA. (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029129(GSM416758)
SW480. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
..............................................................................................................................................................................................................................................................................................................................................................................CAGGGCTGGGAGGACTCTG.............................................................................................................................................................1941.000.0012.003.006.004.004.001.00-1.001.00----1.001.001.00-1.00--1.00--1.001.00--1.001.00----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTGGGAGGACTCTG.............................................................................................................................................................205.000.00-3.001.001.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAAGAAATGGGCT.........................182.000.00------2.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTAGCTTAGTGG......................................................................................................................................1832.000.33-------------------------0.67----------0.33---0.33-0.330.33-------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAAGAAATGGGCTAA.......................201.000.00------1.00--------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGTTCCATGTGAAC...............181.000.00------------1.00--------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................CTGGGAGGACAGGGAATTCTG......................................................................................................................................................211.000.00-----1.00---------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTACTGTTCATCATT.............................................................191.000.00---------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GGGAGGACAGGGAATTAA.......................................................................................................................................................181.000.00-------1.00-------------------------------------------------
............................GGCCTTTCTCCTACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTACTGTTCATCTTT.............................................................191.000.00---------1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................TCTCTCAGACCCTTCAAC..............................................................................................................................................................................................................................181.000.00------------------1.00--------------------------------------
............................................................................................................................................................GGTGGGCTCTCGGTGTTT................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------1.00-------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CCCAGGGCTGGGAGGACAGCAT............................................................................................................................................................221.000.00---------------------1.00-----------------------------------
................................................................................................................................................................................................................................................................................CTGCCTCACCTCCCCGG.............................................................................................................................................................................................................................................................171.000.00--------------------------1.00------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTAGCTTAGTGT......................................................................................................................................1830.670.33-------------------------0.33---------0.33---------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTAGCTTAGTGGT.....................................................................................................................................1930.670.33-------------------------------------0.33-0.33-----------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCATGTGCAGCA.............1620.500.50-------------------------------0.50-------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTAGCTTAG.........................................................................................................................................1530.330.33--------------------------------------0.33------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTAGCTTAGTG.......................................................................................................................................1730.330.33-----------------------------------------0.33---------------

Antisense strand
GTTCTCATCTGAAGAATAGAGTGGGCAAGGCCTTTCTCCTACACACTCAGGTGTCTGATTAGTGAACAGTCACGGTGTCTCCAACTGGGCCCTGAGTTATGGGAGAGGCAAGCCCATGACCCACCAGGCCCCACCAAGAGCCGTGCCACAGCCTGAGGTGGGCTCTCGGTGTTGACCAGCTCTTGGAGTACTTCAGGAGGAGGTGGAGGGACTGGGGAGTTCTAGGAGTGTGTCCATGATAAAGAGCCGCAAACAAGATCCCAGGTCCAAGGCTGCCTCACCTCCCCTGTGACATGGGGTGCTCTCTCAGACCCTTCCAGCTCATTGGGCTTTTGAGCCACCCCTGCGTAGTGGGACCAGGGCCCCCAGGGCTGGGAGGACAGGGAATATGGGGTTGTAGCTTAGGCGTAATGGGGTGAGGACCCCAGGACTCACCCAGCTCTGAAGGTTGCCAGATCTTTGCATCTTACTGTTCATCTTCTGCCTCTGCAGAGCCCTGAATGGGAAGAAATGGGTTCCATGTGCAGCAAGCCAGGAGAGAT
...........................................................................................................................................................................................................................................................................................................................................................................(((((...(((......)))......))))).....((....)).......................................................................................................................................
.........................................................................................................................................................................................................................................................................................................................................................................362...............................................412................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
TAX577579(Rovira)
total RNA. (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029129(GSM416758)
SW480. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
.........................................................................................................................................................................................................GGTGGAGGGACTGGGGAA................................................................................................................................................................................................................................................................................................................................... 184.800.00----------0.40------------------0.800.60-0.400.400.40---------0.200.200.200.200.20-0.200.200.200.20---
..................................................................................................................................................................................................AGGAGGAGGTGGAGGGTCCA........................................................................................................................................................................................................................................................................................................................................ 202.000.00-----2.00---------------------------------------------------
.........................................................................................................................CACCAGGCCCCACCATTTT.................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00----------------1.00----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTTCTGCCTCTCTG................................................... 201.000.00----------------------1.00----------------------------------
........................................................................................................................................................................................................................................................................GTCCAAGGCTGCCTCATAAG.................................................................................................................................................................................................................................................................. 201.000.00-----------1.00---------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................GGGCTGGGAGGACAGGGACTCT........................................................................................................................................................ 221.000.00--------1.00------------------------------------------------
........................................................................................................................................................................................................................GAGTTCTAGGAGTGTGTCCATGATAAAGTG........................................................................................................................................................................................................................................................................................................ 301.000.00-1.00-------------------------------------------------------
.........................................................................................................................................................................................................GGTGGAGGGACTGGGGAATTT................................................................................................................................................................................................................................................................................................................................ 210.400.00----------0.20-------------------------------------------0.20--
.........................................................................................................................................................................................................GGTGGAGGGACTGGGGAATCG................................................................................................................................................................................................................................................................................................................................ 210.200.00-------------------------------------------------0.20-------
.........................................................................................................................................................................................................TCCCCAGTCCCTCCACC.................................................................................................................................................................................................................................................................................................................................... 1750.200.20-----------0.20---------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCCTGGCTTGCT. 1660.170.17------------0.17--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCCAGGAGAGACGC 190.170.00-------------------------------------------------------0.17-
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCACATGGAA............ 1580.120.12--------------------------------------------------------0.12