ID: uc010sml.1_intron_5_0_chr12_50152189_f.3p
GENE: TMBIM6(6)
chr12:50155287-50155536+


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BREAST 		(8)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(7)
HELA 		(4)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CCAGTCTCTTTTCTCTATGCTGCATGACTTCGATGAGTCTAAAGGATCTCAGACACCAGAGTTTTACTTCCTTAGTTGGGGGTAAAGTGTGGGAGAAGCTGGCTCGTGGGGGTAGGGGTGGGGTTTATATTCTGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAGGCACTGCATTGATCTCTTCTTAGATTTCATTACTGTCTTCAGAAAACTCA
.................................................................................................((.((((((..(((((.((((((.......))))))..)))))..)))))).)).(((......)))......................................................................................
...............................................................................................96...................................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040009(GSM532894)
G727T. (cervix)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................TGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................681242.00242.00173.0056.006.004.003.00----------------------------------------
.....................................................................................................................................GCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................67174.0074.0033.0033.003.005.00-----------------------------------------
...................................................................................................................................CTGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................69166.0066.0033.0029.001.001.002.00----------------------------------------
.............................................................................................................................................GTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................59133.0033.0011.0022.00-------------------------------------------
......................................................................................................................................CATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................66125.0025.0021.002.00-2.00-----------------------------------------
....................................................................................................................................TGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCA...................................................67114.0014.0014.00--------------------------------------------
..........................................................................................................................................TTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................62111.0011.009.002.00-------------------------------------------
..............................................................................................................................................TGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................58110.0010.004.005.001.00------------------------------------------
....................................................................................................................................TGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTC....................................................6617.007.007.00--------------------------------------------
......................................................................................................................................CATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCA...................................................6517.007.007.00--------------------------------------------
..............................................................................................................................................TGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAGT.................................................5916.0010.006.00--------------------------------------------
.....................................................................................................................................GCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAGT.................................................6814.0074.004.00--------------------------------------------
.................................................................................................................................................................................................................................TTCATTACTGTCTTCAGAAAACT..2312.002.00-----1.00-----------1.00---------------------------
.......................................................................................................................................................................................................................CTTCTTAGATTTCATTACT................1912.002.00---------------1.00----------------1.00------------
.........................................................................................................................................................................................................................TCTTAGATTTCATTACTGTCTTCAGA.......2612.002.00-------------2.00-------------------------------
............................................................................................................................................TGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAG..................................................6012.002.00-2.00-------------------------------------------
.......................................................................................................................................................................................................................................ACTGTCTTCAGAAAACTC.1812.002.00-------------------------------1.00--------1.00----
..............................................................................................................................................................................................................................GATTTCATTACTGTCTTCAGAAAAC...2512.002.00-------2.00-------------------------------------
....................................................................................................GGCTCGTGGGGGTAGGGGTATGA...............................................................................................................................231.000.00-----------------------------------------1.00---
.........................................................................................................................................................................................................CACTGCATTGATCTCTTCTT.............................2011.001.00------------------------------1.00--------------
........................................................................................................................................................................................................GCACTGCATTGATCTCTT................................1811.001.00-----------------------------1.00---------------
.......................................................................................................................................................................................................GGCACTGCATTGATCTCT.................................1811.001.00-----------------------1.00---------------------
.............................................................................................................................................................................................................................AGATTTCATTACTGTCTTCAGAAAAC...2611.001.00--------------1.00------------------------------
............................................................................................................................................................................AGATCCTAATCTGGTTCTTGCCTTTCAG..................................................2811.001.00----------------------------1.00----------------
.............................................................................................................................................................................................................................AGATTTCATTACTGTCTT...........1811.001.00---------1.00-----------------------------------
.................................................................................................................................................................................................................................TTCATTACTGTCTTCAGAAAAGT..231.000.00---------------1.00-----------------------------
.......................................................................................................................................................................................................GGCACTGCATTGATCT...................................1611.001.00------------------------1.00--------------------
.......................................TAAAGGATCTCAGACACCAGAG.............................................................................................................................................................................................2211.001.00------------1.00--------------------------------
.........................................................................................................................................................................................................................TCTTAGATTTCATTACTGTCTTCAGAA......2711.001.00--------------------------------------1.00------
.......................................................................................................................................................................................................GGCACTGCATTGATCTCTTCT..............................2111.001.00-----1.00---------------------------------------
......................................................................................................................................CATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAGGCACT.............................................7111.001.00--1.00------------------------------------------
.......................................................................................................................................................................................................GGCACTGCATTGATCTCTTCTTAGATT........................2711.001.00--------1.00------------------------------------
..............................................................................................................................................TGGGCTTGTGGATAATACA.........................................................................................191.000.00----------------------1.00----------------------
..........TTCTCTATGCTGCATCATG.............................................................................................................................................................................................................................191.000.00--------------------1.00------------------------
.....................................................................................................................................GCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCC........................................................6111.001.00----1.00----------------------------------------
............................................................................................................................................................................................................................TAGATTTCATTACTGTCTTCAGAAAACT..2811.001.00---------------------------------------1.00-----
........................................................................................................................................................................................................GCACTGCATTGATCTCTTCT..............................2011.001.00-----1.00---------------------------------------
........................................................................................................CGTGGGGGTAGGGGTGGGGTTTA...........................................................................................................................2311.001.00-------------------------------------1.00-------
....................................................................................................................................................................................................................................ATTACTGTCTTCAGAAAACTC.2111.001.00-------1.00-------------------------------------
..........................................................................................................................................................................................................ACTGCATTGATCTCTTCTTAGAT.........................2311.001.00--------------1.00------------------------------
....................................................................................................................................TGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAA..................................................6811.0014.00-1.00-------------------------------------------
........................................................................................................................................................................................................................TTCTTAGATTTCATTACTGTC.............2111.001.00--------------------------1.00------------------
.....................................................................................................................................................GTGGATAAAAAAGTCTGAAGTACAGATCCTA......................................................................3111.001.00---------------------------------1.00-----------
..................................................................................................................................................................................................................................TCATTACTGTCTTCAGAAAACTC.2311.001.00------------1.00--------------------------------
...............................................................................................................................................................................................................................ATTTCATTACTGTCTTCAGAAA.....2211.001.00-------------------1.00-------------------------
...........................................................................................................GGGGGTAGGGGTGGGTGGG............................................................................................................................191.000.00---------------------------1.00-----------------
................................................................................................................................................................................................................................TTTCATTACTGTCTTCAGAAAAC...2311.001.00------------------1.00--------------------------
.......................................................................................TGTGGGAGAAGCTGGCGGT................................................................................................................................................191.000.00-----------------------------------1.00---------
...................................................................................................................................CTGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCCG..................................................691.000.001.00--------------------------------------------
..........................................................................................................................................................................................................ACTGCATTGATCTCTTCTTAG...........................2111.001.00--------1.00------------------------------------
.........................................AAGGATCTCAGACACTCCG..............................................................................................................................................................................................191.000.00-----------1.00---------------------------------
.........................................AAGGATCTCAGACACCAGAGTTTTACTTCC...................................................................................................................................................................................3011.001.00----------------------------------1.00----------
...................................................................................................................................CTGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCTG..................................................691.000.00-1.00-------------------------------------------
......................................................................................................CTCGTGGGGGTAGGGGTATGA...............................................................................................................................211.000.00-----------1.00---------------------------------
.....................................................................................................................................................................................................................................TTACTGTCTTCAGAAAACT..1920.500.50-----0.50---------------------------------------
...............................................................................................................................................................................................................................ATTTCATTACTGTCTTCA.........1830.330.33-------------------------------------------0.33-
.........................................................................................................GTGGGGGTAGGGGTGGGGTT.............................................................................................................................2040.250.25--------------------------------------------0.25
.......................................................................................................................................................................................................................CTTCTTAGATTTCATT...................1650.200.20-----------------0.20---------------------------

Antisense strand
CCAGTCTCTTTTCTCTATGCTGCATGACTTCGATGAGTCTAAAGGATCTCAGACACCAGAGTTTTACTTCCTTAGTTGGGGGTAAAGTGTGGGAGAAGCTGGCTCGTGGGGGTAGGGGTGGGGTTTATATTCTGCATCTTTGTGGGCTTGTGGATAAAAAAGTCTGAAGTACAGATCCTAATCTGGTTCTTGCCTTTCAGGCACTGCATTGATCTCTTCTTAGATTTCATTACTGTCTTCAGAAAACTCA
.................................................................................................((.((((((..(((((.((((((.......))))))..)))))..)))))).)).(((......)))......................................................................................
...............................................................................................96...................................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040009(GSM532894)
G727T. (cervix)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
......TCTTTTCTCTATGCTGCACA................................................................................................................................................................................................................................ 202.000.00------2.00--------------------------------------
............................................................................................................................................................AAAAAGTCTGAAGTAAATT........................................................................... 192.000.00----------------2.00----------------------------
......TCTTTTCTCTATGCTGCAAC................................................................................................................................................................................................................................ 201.000.00------1.00--------------------------------------
......................................................................................GTGTGGGAGAAGCTGATGT................................................................................................................................................. 191.000.00---------1.00-----------------------------------
...........................................................................................................GGGGGTAGGGGTGGGGCCG............................................................................................................................ 191.000.00---------------------1.00-----------------------
............................................AGGAAGTAAAACTCTGGTGTCTGAGATC.................................................................................................................................................................................. 2811.001.00------------------------------------1.00--------
...........................................................................................................................................TTGTGGGCTTGTGGATC.............................................................................................. 171.000.00------------------------------------------1.00--
........................................................ACTAAGGAAGTAAAACTCTG.............................................................................................................................................................................. 2011.001.00----------1.00----------------------------------
......................................................................................GTGTGGGAGAAGCTGATG.................................................................................................................................................. 181.000.00-------------------------1.00-------------------
.......................................................................................................................................................................AGTACAGATCCTAATCTG................................................................. 181.000.00----------1.00----------------------------------