ID: uc010sly.8
GENE: CACNB3(9)
chr12:49219950-49220199+


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(3)
B-CELL
(13)
BRAIN
(21)
BREAST
(29)
CELL-LINE
(5)
CERVIX
(2)
FIBROBLAST
(1)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(1)
RRP40.ip
(13)
SKIN
(4)
UTERUS
(1)
XRN.ip

Sense strand
GCCCAACTCCTCTACCTGCCCCCAGGATTGGCAAGAACACACCCCTCCTCCTCAATTCCCATTCCTCTGCCTGTCCAGGCTTCGATGAATGCCCTTTTCCTCCAATTCCTTCCTGTCCACCATTCGGGAGCCCTCAAAGCCTGCTGGAGTGAGCAGTGGGCAGAGCTCCTGGTGAGCACTGCTGCTGCCTCCCTCCATAGCGGAAGTGCAGAGTGAGATCGAGCGCATATTTGAGCTGGCCAAATCCCTG
............................................................................................................................................(((.(((((.(((((((.(((((.((((.....)))).)))))))))).)).))))))))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189783SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR343335SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038853(GSM458536)
MELB. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR040027(GSM532912)
G220T. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAG.....................................................................................22121.0021.00-1.002.001.001.00------5.00----------1.00--------1.001.00-------1.001.00--2.001.00---------------1.00-----------------------------1.001.00---------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGCT...................................................................................24114.0014.00-----6.00-------1.00-----------1.00----1.00-----------------1.00---1.001.00---------------------------1.00--1.00-----------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATAG..................................................23113.0013.00---7.00--------1.00-----5.00-----------------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGA......................................................................................22113.0013.00-2.00--3.007.00------------------------------------------------------------1.00-----------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGA......................................................................................21111.0011.00-1.00---3.00-----1.00-1.00-1.001.00-------------------------------------------1.00------------------------1.00-------------1.00--
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAG.......................................................................................2019.009.001.002.00--------1.00---------3.00---1.00------------------------------1.00----------------------------------------------
......................................................ATTCCCATTCCTCTGCTAG.................................................................................................................................................................................198.000.00------------4.00--------------3.00-------------------------------------------------------1.00------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGA......................................................................................2316.006.00-----------3.00-------------------------------------2.00-----------------------------1.00----------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAG.......................................................................................2116.006.00-1.00-----------------2.00-1.00------------------------2.00-------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGC....................................................................................2216.006.00-----------------4.00----------------1.00-------------------------------------1.00-----------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAT.......................................................................................2215.002.00---------1.00-------------------2.00------------------1.00----------------------------------------------1.00------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGT......................................................................................2315.005.00-1.00-----1.00---------1.00--------1.00-----------------------------1.00---------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAA.......................................................................................2015.004.00----------------2.00-------1.00----1.00----1.00-------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAG.......................................................................................2215.005.00----2.00----------1.00-----1.00----------1.00---------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGAGCT...................................................................................2515.005.00-2.00--1.00--------------------------1.00-------------------------------------------1.00--------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATAGT.................................................2415.0013.00---4.00-----------------------------------------------1.00--------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGT....................................................................................2315.0021.001.001.00--1.00----------------------------------------------------1.00-------------------------------1.00------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGC....................................................................................2314.004.00----1.00---------------------1.00----------------1.00--------------------------------------------1.00-------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCA........................................................................................1914.004.001.00-------1.00-------------2.00-------------------------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGA......................................................................................2014.004.00-------------------1.00---1.00---------------1.001.00-------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAG.....................................................................................2113.003.00------1.00-----------------------------1.00---------------------------------1.00-------------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCAT....................................................2113.003.00---1.00--------------------------------------------------1.00-------1.00---------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCATT......................................................................................2313.002.00--------------------1.001.00-1.00------------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGA.........................................................................................193.000.00---------------2.00------------------------------------------------------------1.00-------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGAA.....................................................................................2313.0013.00-1.00--2.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGG..........................................................................................1912.002.00-----------------------------------2.00------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAT.......................................................................................212.000.00-1.00-----------------------------------------------------------------------------------------------1.00----
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGC.........................................................................................2012.002.00---------------------1.00--------------------------------------------------------1.00-----------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCA........................................................................................2112.002.00--1.00---------------------------------1.00-----------------------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGA....................................................................................2312.0021.00--------------------------1.00-----------------------------------------------1.00---------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGCTA..................................................................................2412.001.00-1.00--------------------------1.00-------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGAG.....................................................................................2312.002.00-1.00--------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................CACTGCTGCTGCCTCCCTCCATAG..................................................2412.002.00-----------2.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATAGAT................................................2512.0013.00----------------------------2.00-------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAAT......................................................................................222.000.00-------------------------------------2.00----------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGAAA....................................................................................2412.0013.00-----------------------1.00---------------------------------------------------------------------1.00--------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCATAT.....................................................................................232.000.00------------------------------------------2.00-----------------------------------------------------------
....................................................................................................................................CTCAAAGCCTGCTGGAGTGAG.................................................................................................2112.002.00-----------------------------------------------2.00------------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGCTA..................................................................................2512.0014.00-1.00-----------------------1.00----------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGAA.........................................................................................191.000.00---------------------------------------1.00--------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGAAT....................................................................................2511.006.00---------------1.00--------------------------------------------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGAT........................................................................................191.000.00--1.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................................CACTGCTGCTGCCTCCCTCCAG....................................................221.000.00-----------------------------------------------------------------------1.00------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGAG.....................................................................................2411.001.00-1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCATTT.....................................................................................2411.002.00----1.00-------------------------------------------------------------------------------------------------
......................................................................................................................................................GAGCAGTGGGCAGAGGCTC.................................................................................191.000.00------------1.00-----------------------------------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGCT...................................................................................2311.001.00--------------------------------------------------------------------------------1.00---------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGAT..........................................................................................191.000.00--------------------------------------------------------------------------------------------------1.00---
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATAGC.................................................2411.001.00---------------------------------------------------------------1.00--------------------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCA.....................................................2011.001.00--------------------------------------------------1.00---------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGT......................................................................................2211.006.00-1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGAAAT...................................................................................2511.0013.00----------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCCT.......................................................................................2211.002.00-----------------------------------------1.00------------------------------------------------------------
.........................................CCCCTCCTCCTCAATTCC...............................................................................................................................................................................................1811.001.00----------------------------------------------------------------1.00-------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGAA.....................................................................................2411.006.00--------------------------------------------------------------------1.00---------------------------------
..........................................CCCTCCTCCTCAATTCTTCG............................................................................................................................................................................................201.000.00----------------------------------------------------------1.00-------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGAA...................................................................................2311.003.00-1.00----------------------------------------------------------------------------------------------------
...............................CAAGAACACACCCCTCACGA.......................................................................................................................................................................................................201.000.00--------------------------------------1.00---------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAGAGCTAAA................................................................................2811.005.00-------------------------1.00----------------------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGA....................................................................................2211.003.00-----------------------------------------------------------1.00------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAAA......................................................................................221.000.00-------------------1.00----------------------------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAAAT...................................................................................2311.004.00----------------------------------------------------------------------------------------------1.00-------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGAGCT...................................................................................2611.001.00-----------------------------------------------------------------------------1.00------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAAAAA....................................................................................241.000.00-----------------------------------------------------------------1.00------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGCGT....................................................................................2311.009.00-------------------------------------------1.00----------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGCTG..................................................................................2411.001.001.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGAGT....................................................................................2511.001.00---------------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GCGGAAGTGCAGAGTGAGA................................1911.001.00-1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCAA.......................................................................................211.000.00-------------------------------------------------------------------1.00----------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGTAAG.................................................................................2611.0021.00--------------------------------------------------------------------------------------1.00---------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCAGAG..................................................2311.001.00---1.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGCCT..................................................................................2511.004.00------------------------------------------------------------------------------------------1.00-----------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGTTAT...................................................................................2611.005.00----1.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATAA..................................................231.000.00---1.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGT......................................................................................2111.009.00---------------------------------------------1.00--------------------------------------------------------
................................................................................................................................................................................CACTGCTGCTGCCTCCCTCCAT....................................................2211.001.00---1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATAAT.................................................241.000.00---1.00--------------------------------------------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGCTTT.................................................................................2511.001.00--1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGTAAT...................................................................................2611.005.00----1.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTGCTGCTGCCTCCCTCCATT...................................................2211.003.00---1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTGCTGCCTCCCTCCATAGT.................................................221.000.00----1.00-------------------------------------------------------------------------------------------------
.........................................................................................................TTCCTTCCTGTCCACCCCTA.............................................................................................................................201.000.00--------------------------------------1.00---------------------------------------------------------------
...............................................................................................................................................CTGGAGTGAGCAGTGAGAC........................................................................................191.000.00----------------------------------------------------------------------------------1.00-------------------
...............................................................................................................................................CTGGAGTGAGCAGTGGGCAGAGCAA..................................................................................2511.004.001.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................GCTGGAGTGAGCAGTGGGCCGT......................................................................................221.000.00----1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCAGAGTGAGATCGAGCG.........................1911.001.00---------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................TGCTGGAGTGAGCAGTGGGCAGATT....................................................................................2511.006.00-------1.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................CACTGCTGCTGCCTCCCTCCATAT..................................................2411.001.00---------------------------------------------------------------------1.00--------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAGAGCA...................................................................................2311.006.00----1.00-------------------------------------------------------------------------------------------------
................................................................................................................................................................................CACTGCTGCTGCCTCCCTCCATA...................................................2311.001.00---------------------------------1.00--------------------------------------------------------------------
................................................................................................................................................TGGAGTGAGCAGTGGGCAG.......................................................................................1920.500.50------------------------0.50-----------------------------------------------------------------------------

Antisense strand
GCCCAACTCCTCTACCTGCCCCCAGGATTGGCAAGAACACACCCCTCCTCCTCAATTCCCATTCCTCTGCCTGTCCAGGCTTCGATGAATGCCCTTTTCCTCCAATTCCTTCCTGTCCACCATTCGGGAGCCCTCAAAGCCTGCTGGAGTGAGCAGTGGGCAGAGCTCCTGGTGAGCACTGCTGCTGCCTCCCTCCATAGCGGAAGTGCAGAGTGAGATCGAGCGCATATTTGAGCTGGCCAAATCCCTG
............................................................................................................................................(((.(((((.(((((((.(((((.((((.....)))).)))))))))).)).))))))))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189783SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR343335SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038853(GSM458536)
MELB. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR040027(GSM532912)
G220T. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
....................................ACACACCCCTCCTCCTCAGGTT................................................................................................................................................................................................ 2263.000.0016.00-6.50---7.505.007.508.006.50--2.002.50---------------1.00---------------------------------------------------------------------0.50-
....................................ACACACCCCTCCTCCTCAGGCT................................................................................................................................................................................................ 2221.000.006.00-3.50---2.002.001.501.501.50--1.501.50---------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAAGTT................................................................................................................................................................................................ 225.500.001.00-0.50---0.501.500.500.500.50---0.50---------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGGT................................................................................................................................................................................................. 215.000.001.00-1.00---0.501.000.50-1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GGAAGTGCAGAGTGAGATTG............................. 202.000.00------------2.00-----------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGGTA................................................................................................................................................................................................ 221.500.000.50------0.500.50---------------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGG.................................................................................................................................................................................................. 201.500.000.50-0.50-----------0.50---------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAAGCT................................................................................................................................................................................................ 221.500.000.50------0.50--0.50-------------------------------------------------------------------------------------------
....................................TGAGGAGGAGGGGTGTGT.................................................................................................................................................................................................... 1821.001.00------0.50-----------------------0.50-----------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGGGT................................................................................................................................................................................................ 221.000.00-------------0.500.50---------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAAG.................................................................................................................................................................................................. 201.000.00--------0.50-----0.50---------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGGC................................................................................................................................................................................................. 211.000.000.50-0.50---------------------------------------------------------------------------------------------------
...........................................CCTCCTCCTCAATTCAGAC............................................................................................................................................................................................ 191.000.00-------------1.00----------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAAGT................................................................................................................................................................................................. 211.000.000.50-0.50---------------------------------------------------------------------------------------------------
......................................ACACCCCTCCTCCTCAATCT................................................................................................................................................................................................ 201.000.00--------------1.00---------------------------------------------------------------------------------------
................................................................................................TTCCTCCAATTCCTTGGG........................................................................................................................................ 181.000.00------------------------------------------------------------------------------------------------1.00-----
........................................ACCCCTCCTCCTCAACGGC............................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------1.00----------------------------
......................................ACACCCCTCCTCCTCAATAA................................................................................................................................................................................................ 201.000.00---------------------------------------------------------------------------------------1.00--------------
......................................ACACCCCTCCTCCTCAATAT................................................................................................................................................................................................ 201.000.00----------------1.00-------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGTCT................................................................................................................................................................................................ 220.500.000.50-----------------------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAG................................................................................................................................................................................................... 190.500.00------------------------0.50-----------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGGCA................................................................................................................................................................................................ 220.500.00------0.50-----------------------------------------------------------------------------------------------
...................................TGAGGAGGAGGGGTGTGTT.................................................................................................................................................................................................... 1920.500.50-------------------------------0.50----------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAAGG................................................................................................................................................................................................. 210.500.000.50-----------------------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAGGTG................................................................................................................................................................................................ 220.500.00---------0.50--------------------------------------------------------------------------------------------
....................................ACACACCCCTCCTCCTCAAGC................................................................................................................................................................................................. 210.500.000.50-----------------------------------------------------------------------------------------------------
....................................................CAGAGGAATGGGAATTG..................................................................................................................................................................................... 1720.500.50-----------------------0.50------------------------------------------------------------------------------
.......................................TTGAGGAGGAGGGGTG................................................................................................................................................................................................... 1690.110.11-----------------------------------------------------------------------------------------------------0.11