ID: uc010sjy.1_intron_13_0_chr12_31289117_r
GENE: OVOS2(16)
chr12:31289067-31289604-


(1)
AGO2.ip
(2)
B-CELL
(3)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(1)
HEART
(6)
OTHER
(2)
SKIN
(1)
TESTES

Sense strand
GTAAGAACAAACTTCCCAGAGACATGGATGTGGGACCTCGTCAGTGTCGAGTGAGTTTTAACCATTTTCTCTCCTATGTGTCTTTATTTCTATTTTCTTTTTCTTTCTTCAGGTTTATTCCTGGGTATATAAAACAGTACCATATTTGTAAAATATATATCATTGATTTGCATGTACTTATCATACATTTTATTTTATTTTTTTCTCTAGCATTGTTTTCCCTTCACCAAGAGTTTCTCTTCTATTCATTTTATGCAGACAGATTTAACCTGCCCCAATTAAAAAAAAAAGTGGCGTTTAAAGAAAAATGACCTTTCTATACTCAAATTTTATAAAAATCCAGCTCTCATTATTTTTATCTAATGCCCCATCCAAACAATATAACTCACTTTTGAGCTTCAGTCAATACTTTTCTGCTTGCTCTGCACTTAATTTTAAGTTCTTGGTTCAGACAAAGAATGTGTTTTACCGATAACCTCTTCTTCCAGTTCCTCAGGCTCTGCCAATCTTTCGTTCCTCATTCCTGATACGATAACCC
.............................................................................................................((((......))))(((((........)))))......((((((((........((((............)))).......))))))))....................................................................................................................................................................................................................................................................................................................................................
......................................................................................87........................................................................................................................209.......................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189785SRR343334SRR189784SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTTTG.............................................................................................................................................................................................................................................................................................................................................2411.000.005.003.003.00--------------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTCATAG.........................................................................................................................................................................................................................................................................................................................................2510.000.004.001.004.001.00-------------------------
...........................................................................................ATTTTCTTTTTCTTTCTTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................227.000.00-3.001.002.001.00------------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTTTTG..........................................................................................................................................................................................................................................................................................................................................246.000.004.001.00-1.00-------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTTTTG............................................................................................................................................................................................................................................................................................................................................255.000.003.001.00-1.00-------------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTCTCCG.........................................................................................................................................................................................................................................................................................................................................255.000.005.00----------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTCTTG.............................................................................................................................................................................................................................................................................................................................................243.000.00-2.00-1.00-------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................ACAATATAACTCACTTTTC................................................................................................................................................192.000.00--------2.00--------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTCTATA.........................................................................................................................................................................................................................................................................................................................................252.000.00-----------1.00-1.00---------------
.....................................................................................ATTTCTATTTTCTTTTTTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................212.000.00-2.00---------------------------
.............................................................................................................................................................................................TTATTTTATTTTTTTCTCTTGTT......................................................................................................................................................................................................................................................................................................................................231.000.00----1.00------------------------
......................................................................................................................................................................................ATACATTTTATTTTATTTTTTTCAG...........................................................................................................................................................................................................................................................................................................................................251.000.00--1.00--------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTGCACTTAATGTG......................................................................................................191.000.00----------------1.00------------
......................................................................................TTTCTATTTTCTTTTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---1.00-------------------------
....................................................................................TATTTCTATTTTCTTTTTCATTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00--1.00--------------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTCAAG..........................................................................................................................................................................................................................................................................................................................................241.000.00--1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................AATATAACTCACTTTTCAAG.............................................................................................................................................201.000.00---------1.00-------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTCTCC..........................................................................................................................................................................................................................................................................................................................................241.000.00--1.00--------------------------
.......................................................................................TTCTATTTTCTTTTTCTTTCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00---1.00-------------------------
......................................................................................................................................................................................................TTTTTTCTCTAGCATGTGT.................................................................................................................................................................................................................................................................................................................................191.000.00-----------1.00-----------------
.....................................................................................................TCTTTCTTCAGGTTTCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----1.00------------------------
......................................................................................TTTCTATTTTCTTTTTCCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--1.00--------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTTTTTG...........................................................................................................................................................................................................................................................................................................................................261.000.00-1.00---------------------------
.......................................................................................................................................................................................TACATTTTATTTTATTTTTTTTAG...........................................................................................................................................................................................................................................................................................................................................241.000.001.00----------------------------
..................................................................................................................................................................................................TTATTTTTTTCTCTAGCAA.....................................................................................................................................................................................................................................................................................................................................191.000.00----1.00------------------------
......................................................................................................................................................AAATATATATCATTGGCGG.................................................................................................................................................................................................................................................................................................................................................................................191.000.00----1.00------------------------
......................................................................................................................................................................................ATACATTTTATTTTATTTTTTTTTG...........................................................................................................................................................................................................................................................................................................................................251.000.00--1.00--------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTCTT..............................................................................................................................................................................................................................................................................................................................................231.000.00-1.00---------------------------
.......................................................................................................................................................................................................TTTTTCTCTAGCATTTTAG................................................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00-----------
...............................................................................................................................................................................................ATTTTATTTTTTTCTCTGTC.......................................................................................................................................................................................................................................................................................................................................201.000.00----1.00------------------------
......................................................................................................................................................................................................TTTTTTCTCTAGCATTCT..................................................................................................................................................................................................................................................................................................................................181.000.00--------1.00--------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTTTTTTG..........................................................................................................................................................................................................................................................................................................................................271.000.00--1.00--------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTTAT.............................................................................................................................................................................................................................................................................................................................................241.000.00-1.00---------------------------
............................................................................................................................................................................................................................................................ATGCAGACAGATTTACTAG...........................................................................................................................................................................................................................................................................191.000.00----------1.00------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTCTG.............................................................................................................................................................................................................................................................................................................................................211.000.00---1.00-------------------------
........................................................................................TCTATTTTCTTTTTCTTCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------1.00---------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGATACGATAACCTG191.000.00---------1.00-------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTTGG...........................................................................................................................................................................................................................................................................................................................................231.000.001.00----------------------------
......................................................................................TTTCTATTTTCTTTTTCTTTCTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-1.00---------------------------
.............................................................................................................................................................................................................................................................................................................AGAAAAATGACCTTTTGA...........................................................................................................................................................................................................................181.000.00------1.00----------------------
............................................................................................TTTTCTTTTTCTTTCGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------1.00---------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTTTA.............................................................................................................................................................................................................................................................................................................................................241.000.001.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGTTCCTCAGGAAT......................................181.000.00------------------------1.00----
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTATTG..........................................................................................................................................................................................................................................................................................................................................241.000.00---1.00-------------------------
................................................................................................CTTTTTCTTTCTTCAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTACT.............................................................................................................................................................................................................................................................................................................................................2450.600.20-0.40-0.20-------------------------
........................................................................................................................................................................................ACATTTTATTTTATTTTTTTCTCTAGC.......................................................................................................................................................................................................................................................................................................................................2720.500.50-----------0.50-----------------
.........................................CAGTGTCGAGTGAGTTTTAACCATTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.50-------------------------0.50---
.....................................................................................ATTTCTATTTTCTTTTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.290.29----0.29------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTT................................................................................................................................................................................................................................................................................................................................................2150.200.20-0.20---------------------------
.....................................................................................................................................................................................CATACATTTTATTTTATTTTTATC.............................................................................................................................................................................................................................................................................................................................................2450.200.20---0.20-------------------------

Antisense strand
GTAAGAACAAACTTCCCAGAGACATGGATGTGGGACCTCGTCAGTGTCGAGTGAGTTTTAACCATTTTCTCTCCTATGTGTCTTTATTTCTATTTTCTTTTTCTTTCTTCAGGTTTATTCCTGGGTATATAAAACAGTACCATATTTGTAAAATATATATCATTGATTTGCATGTACTTATCATACATTTTATTTTATTTTTTTCTCTAGCATTGTTTTCCCTTCACCAAGAGTTTCTCTTCTATTCATTTTATGCAGACAGATTTAACCTGCCCCAATTAAAAAAAAAAGTGGCGTTTAAAGAAAAATGACCTTTCTATACTCAAATTTTATAAAAATCCAGCTCTCATTATTTTTATCTAATGCCCCATCCAAACAATATAACTCACTTTTGAGCTTCAGTCAATACTTTTCTGCTTGCTCTGCACTTAATTTTAAGTTCTTGGTTCAGACAAAGAATGTGTTTTACCGATAACCTCTTCTTCCAGTTCCTCAGGCTCTGCCAATCTTTCGTTCCTCATTCCTGATACGATAACCC
.............................................................................................................((((......))))(((((........)))))......((((((((........((((............)))).......))))))))....................................................................................................................................................................................................................................................................................................................................................
......................................................................................87........................................................................................................................209.......................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189785SRR343334SRR189784SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCCAGTTCCTTC........................................... 185.000.00-----5.00-----------------------
.............................................................................................................................................................................................................................................................................................AAAAAGTGGCGTTTACAG........................................................................................................................................................................................................................................... 183.000.00-------2.00-------------1.00-------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACTGGAAGAAG............................................. 1502.002.00--------------2.00--------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAAGTTCTTGGGTCA........................................................................................ 192.000.00------2.00----------------------
..............................................................................................................................................TATTTGTAAAATATATAACT........................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00---------1.00-------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCCAGTTCCTAGA.......................................... 191.000.00--------------------1.00--------
.......................................................................................................................................................................................................................................AGTTTCTCTTCTATTAGAA................................................................................................................................................................................................................................................................................................ 191.000.00----------------------1.00------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAAGTTCTTGGTGTCA....................................................................................... 201.000.00------1.00----------------------
.................................................................................................................................................................................................................................................................................................................................................................TTTTATCTAATGCCCCATAG..................................................................................................................................................................... 201.000.00----------1.00------------------
......................................................................................................................................................................................................................GTTTTCCCTTCACCATCTG................................................................................................................................................................................................................................................................................................................. 191.000.00------------------1.00----------
...AGAACAAACTTCCCAGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------1.00-------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCCAGTTCCTCATC......................................... 191.000.00-----1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................................ATAATGAGAGCTGGATTT......................................................................................................................................................................................... 1821.001.00-------------------1.00---------
.........................................................................................................................................................................................................................................................................................................................................................................TGAGTTATATTGTTTGGATGGGGCATT...................................................................................................................................................... 2711.001.00------------1.00----------------
...................................................................................................................................................................................................................................................................................................................................................................TTATCTAATGCCCCATAG..................................................................................................................................................................... 181.000.00----------1.00------------------
.....................................................................................................................................................................................................TTTTTTTCTCTAGCACCCT.................................................................................................................................................................................................................................................................................................................................. 191.000.00-------1.00---------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCCAGTTCCTCAGA......................................... 191.000.00-----------------------1.00-----
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCCTGAGGAACTGGAAGAAGAGG.................................... 2720.500.50------------0.50----------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGGAATGAGGAACGAAAGATTGGCA......... 2920.500.50------------0.50----------------
...............................................................................................................................................................................................................................................................................................................................................................................................AAGTATTGACTGAAGCTCAAAAGTGAGT............................................................................................................................... 2820.500.50------------0.50----------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGAGGAACTGGAAGA........................................ 1850.200.20---------------------------0.20-
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACTGGAAGAAGAG............................................. 1750.200.20--------------------------0.20--
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGAGGAACTGGAAG........................................ 1760.170.17----------------------------0.17