ID: uc010sjc.1_intron_1_0_chr12_25215835_f.3p
GENE: (2)
chr12:25216457-25216706+


(2)
AGO2.ip
(12)
B-CELL
(3)
BRAIN
(26)
BREAST
(10)
CELL-LINE
(7)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
KIDNEY
(4)
LIVER
(1)
OTHER
(13)
SKIN
(3)
UTERUS
(1)
XRN.ip

Sense strand
AAGTTACTCATATGTATACCTTTTGATCAAACACTTGAAAGCTTTTTTACTTGACAGAATTTATTTTCTTCTTGATCTCTCTCACAGGGTCACTTGAGACTAGTGATATTCTTTCCACCTTTGAAATGGAGGTAGTAGATTATGAAATATATGTTACATTCCTTTAGATGGCTAATACTACTTGGTTTTCTGTTCAGAAGCAGTGTTGCCACAAACTATATGGTGGTCAAGAAGCAAGAATACATCAGAC
...............................................................................................................................((((((((((.(((....)))...)))))).))))..((((..(((((......)))))..))))..........................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040036(GSM532921)
G243N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040040(GSM532925)
G612N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR040037(GSM532922)
G243T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR343334SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR343336SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040025(GSM532910)
G613T. (cervix)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR343337SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................GAGGTAGTAGATTATAGTT.......................................................................................................1974.000.00---9.006.00-1.00--2.003.004.002.003.00-2.003.002.001.003.001.001.001.001.002.001.00-2.001.00------2.002.00-2.002.00-1.00--1.00----1.00---1.00--1.00-1.001.00---1.00-1.00---1.001.00--1.00-1.001.00-1.00-------------
................................................................................................................................GAGGTAGTAGATTATAG.........................................................................................................1728.000.0021.00---2.002.00----------------------------2.00-----1.00---------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATATAG.......................................................................................................1925.000.0013.00-----1.00-------------1.001.00---1.001.00-1.00--------------1.00-1.00-1.00-------1.00----1.00------1.00------------------------
...............................................................................................................................GGAGGTAGTAGATTATATAG.......................................................................................................2022.000.009.003.004.00----3.00------2.00-----------------------------------------------1.00-----------------------------
...............................................................................................................................GGAGGTAGTAGATTATAGTT.......................................................................................................2016.000.00-5.002.00---2.00-2.00-------------1.00------2.00-----------------------------------------1.001.00-------------------
...............................................................................................................................GGAGGTAGTAGATTATAG.........................................................................................................1814.000.005.001.002.00--4.00-1.00-------------------------------------------1.00----------------------------------------
................................................................................................................................GAGGTAGTAGATTATAGT........................................................................................................1811.000.001.00---1.00----2.001.00----1.00----1.00--1.00----------------------1.00-1.00-------------------------1.00-----------------
...............................................................................................................................GGAGGTAGTAGATTATAGT........................................................................................................1910.000.00-5.001.00-----2.00-----1.00------1.00----------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATATAC.......................................................................................................203.000.003.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................ACATTCCTTTAGATGG...............................................................................1672.572.57--------------------------------------------------------------------------------0.860.43-0.140.140.140.140.140.140.140.140.14
...............................................................................................................................GGAGGTAGTAGATTATAT.........................................................................................................182.000.00-1.001.00-----------------------------------------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATATT........................................................................................................182.000.00------1.00--------------------------------------------------1.00----------------------------------
................................................................................................................................GAGGTAGTAGATTATAA.........................................................................................................172.000.001.00-------------------------1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................GTGGTCAAGAAGCAAGAATACAT.....2312.002.00------------------2.00-------------------------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATAGTA.......................................................................................................192.000.00------------1.00-------------------1.00-----------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATAA.........................................................................................................182.000.00-1.00-----1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................ATACTACTTGGTTTTCTGTTCAG.....................................................2312.002.00-------------------------------------1.00--------------------------1.00---------------------------
................................................................................................................................................................................ACTACTTGGTTTTCTGTTCAG.....................................................2112.002.00-------------------------------------1.00----------------1.00-------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATATAA.......................................................................................................202.000.00-1.001.00-----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGGTGGTCAAGAAGCAAGAATACA......2411.001.00--------------------------------1.00-----------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATTGT........................................................................................................181.000.00---------------------------------1.00----------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTAAAA.........................................................................................................181.000.00--1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GTGGTCAAGAAGCAAGAATACA......2211.001.00--------------------------------------------------------------------1.00-----------------------
................................................................................................................................GAGGTAGTAGATTATGATCTA.....................................................................................................211.000.00------------------------------1.00-------------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATAGAG.......................................................................................................191.000.00------------1.00-------------------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATGGTT.......................................................................................................2011.001.00----------------------1.00---------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATATGT.......................................................................................................201.000.00-----------------1.00--------------------------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATAAAG.......................................................................................................191.000.00------------------------------1.00-------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATAGTC.......................................................................................................201.000.00---------------------------------1.00----------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATAGCT.......................................................................................................201.000.00--------1.00-----------------------------------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATATAT.......................................................................................................191.000.001.00-------------------------------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTACATA........................................................................................................191.000.00------1.00-------------------------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATACCG.......................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GTGGTCAAGAAGCAAGAATT........201.000.00------------------------------------------------------------------1.00-------------------------
...............................................................................................................................GGAGGTAGTAGATTATAAA........................................................................................................191.000.00-1.00------------------------------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATAGAG.......................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATATA........................................................................................................191.000.00--------------------------------------------------1.00-----------------------------------------
....................................................................................................TAGTGATATTCTTTCTCCT...................................................................................................................................191.000.00-------------------------------1.00------------------------------------------------------------
...............................................................................................................................................................................TACTACTTGGTTTTCTGTTCAG.....................................................2211.001.00------------------------------------------1.00-------------------------------------------------
...............................................................................................................................GGAGGTAGTAGATTATATAT.......................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
................................................................................................................................GAGGTAGTAGATTATGTACG......................................................................................................201.000.00-------------------------------------------------------------1.00------------------------------
...............................................................................................................................GGAGGTAGTAGATTATG..........................................................................................................1711.001.001.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................................ATACTACTTGGTTTTCTGTTCA......................................................2211.001.00-------------------------------------------------------------------------------1.00------------
...............................................................TTTTCTTCTTGATCTCTTG........................................................................................................................................................................191.000.00-------------------------------1.00------------------------------------------------------------
............................................................................................................................................................................................TCTGTTCAGAAGCAGTG.............................................1730.330.33----------------------------------------------------------------------------------0.33---------

Antisense strand
AAGTTACTCATATGTATACCTTTTGATCAAACACTTGAAAGCTTTTTTACTTGACAGAATTTATTTTCTTCTTGATCTCTCTCACAGGGTCACTTGAGACTAGTGATATTCTTTCCACCTTTGAAATGGAGGTAGTAGATTATGAAATATATGTTACATTCCTTTAGATGGCTAATACTACTTGGTTTTCTGTTCAGAAGCAGTGTTGCCACAAACTATATGGTGGTCAAGAAGCAAGAATACATCAGAC
...............................................................................................................................((((((((((.(((....)))...)))))).))))..((((..(((((......)))))..))))..........................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040036(GSM532921)
G243N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040040(GSM532925)
G612N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR040037(GSM532922)
G243T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR343334SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR343336SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040025(GSM532910)
G613T. (cervix)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR343337SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................................................................TATGGTGGTCAAGAAGAGC............. 191.000.00-----------------------------------------------------------------------------1.00--------------
..........................................................................................................................................................................................................................TATGGTGGTCAAGAAGAG.............. 181.000.00----------------------------------------------------1.00---------------------------------------