ID: uc010shl.1_intron_5_0_chr12_12284857_r.3p
GENE: LRP6(17)
chr12:12284807-12285056-


(1)
AGO1.ip OTHER.mut 		(3)
BRAIN 		(4)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(2)
OTHER 		(10)
SKIN 		(2)
UTERUS

Sense strand
TGTTTGTACTTCTGTGTGACCATGATTGTGTTTTTGTCACTCCCCTTCTCCTTGTTCATTTGAAGAACCTCCAACATGTTCTCCTCAGCAGTTTACTTGTTTCACGGGGGAAATTGACTGTATCCCTGTGGCTTGGCGGTGCGATGGGTTTACTGAATGTGAAGACCACAGTGATGAACTCAATTGTCCTGTATGCTCAGAGTCCCAGTTCCAGTGTGCCAGTGGGCAGTGTATTGATGGTGCCCTCCGA
........................................................................................................................((((.(((((((((.(((...((..........))..))).))).)))))).))))..........................................................................
..........................................................................................................107.......................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................AATTGACTGTATCCCTGTGGC......................................................................................................................21128.0028.0028.00-------------------------------------------
.GTTTGTACTTCTGTGTGACC.....................................................................................................................................................................................................................................2013.003.00---3.00----------------------------------------
.....................................................................................................TCACGGGGGAAATTGAAC...................................................................................................................................182.000.00-----2.00--------------------------------------
..............................................................................................................................................................GTGAAGACCACAGTGATGA.........................................................................1921.501.50-1.00-----0.50------------------------------------
..............................................................................................................................................................GTGAAGACCACAGTGCAT..........................................................................181.000.00--------------------------------------1.00-----
......................................................................................................................................GGCGGTGCGATGGGTTCTAG................................................................................................201.000.00---------------1.00----------------------------
.....................................................................................................................................................................................................CAGAGTCCCAGTTCCAGTGTGCCAGTG..........................2711.001.00-1.00------------------------------------------
......................................................................................................................................................TACTGAATGTGAAGACCACAGTGATG..........................................................................2611.001.00-1.00------------------------------------------
.....................................................................................................TCACGGGGGAAATTGACTGTATCC.............................................................................................................................2411.001.00------------------------------1.00-------------
...........................................................................................................................................................AATGTGAAGACCACAGTGATGAA........................................................................2311.001.00--1.00-----------------------------------------
.....................................................................................................................................................................................AATTGTCCTGTATGCTCAGAG................................................2111.001.00-----------1.00--------------------------------
.............................................TTCTCCTTGTTCATTCGGT..........................................................................................................................................................................................191.000.00-----------------------------------------1.00--
..............................................................................................................................................................................TGAACTCAATTGTCCTGTA.........................................................1911.001.00--------1.00-----------------------------------
...............................................................................................................................................ATGGGTTTACTGAATGTGAAGA.....................................................................................2211.001.00----------------------1.00---------------------
...............................................................................................................................................................................................................................GGGCAGTGTATTGATAG..........171.000.00-----------------1.00--------------------------
.............................................................................GTTCTCCTCAGCAGTTTAC..........................................................................................................................................................1911.001.00-1.00------------------------------------------
..........................................................................................................................................GTGCGATGGGTTTACTGAA.............................................................................................1911.001.00-----------------------------------1.00--------
...............................................................................................................................................................................................................................GGGCAGTGTATTGATAACT........191.000.00----1.00---------------------------------------
.........................................................................................................................................................................................GTCCTGTATGCTCAGAGTCCCAGTTCCAG....................................2911.001.00----------1.00---------------------------------
....................................TCACTCCCCTTCTCCTTGTTCA................................................................................................................................................................................................2211.001.00------1.00-------------------------------------
.......................................................................CAACATGTTCTCCTCAGCAG...............................................................................................................................................................2011.001.00----------------------------------------1.00---
................................................................................................................................................................................AACTCAATTGTCCTGTATG.......................................................1911.001.00---------------------1.00----------------------
............................................................................................................GGAAATTGACTGTATCCC............................................................................................................................1811.001.00----1.00---------------------------------------
..................................................................................CCTCAGCAGTTTACTTGTTTCACGGGGG............................................................................................................................................2811.001.00--------------------------1.00-----------------
...................................................................................................................................................................................TCAATTGTCCTGTATGCTCAGAGTCCC............................................2711.001.00---------------------------------1.00----------
..................................................................................................................................................................................................................................CAGTGTATTGATGGTGCCCTCC..2211.001.00-------1.00------------------------------------
...............................................................................................................AATTGACTGTATCCCTGTTGC......................................................................................................................211.000.001.00-------------------------------------------
..............................................................................................................AAATTGACTGTATCCCTGTGGCTTGGC.................................................................................................................2711.001.00---------------------------------------1.00----
....................................................................................................................................................................................CAATTGTCCTGTATGCTCAGAGTCC.............................................2511.001.00-------------------------1.00------------------
..................................................................................................GTTTCACGGGGGAAATTGACTGTATA..............................................................................................................................261.000.00--1.00-----------------------------------------
...............................................................................................................AATTGACTGTATCCCTGTGGCTTTG..................................................................................................................251.000.00------------------------------------1.00-------
.............................................................................................................................................................................ATGAACTCAATTGTCCTGTATGCTCAGA.................................................2811.001.00--1.00-----------------------------------------
................................................................................................................................................................................AACTCAATTGTCCTGTATGCT.....................................................2111.001.00------------------------1.00-------------------
.....................................................................................................................................................................CCACAGTGATGAACTCAATTG................................................................2111.001.00----------------1.00---------------------------
......................................................................................................................................................TACTGAATGTGAAGACCACAGTGATGAAC.......................................................................2911.001.00-----------------------1.00--------------------
...........................................................................................................................................................AATGTGAAGACCACAGTGATGAACTCAATT.................................................................3011.001.00------1.00-------------------------------------
.............................................................................................................................................................TGTGAAGACCACAGTGATGA.........................................................................2011.001.00--------------------1.00-----------------------
...............................................................................................................................................................................................................................GGGCAGTGTATTGATAGC.........181.000.00---------------------------1.00----------------
...........................................................................................................................................................AATGTGAAGACCACAGTGATGAAC.......................................................................2411.001.00-------------------1.00------------------------
...........................................................................ATGTTCTCCTCAGCAGTTTAC..........................................................................................................................................................2111.001.00-1.00------------------------------------------
....................................................................................................................................................................................................TCAGAGTCCCAGTTCCAGT...................................1911.001.00-------------1.00------------------------------
......................................................................................................................TGTATCCCTGTGGCTTGGC.................................................................................................................1911.001.00------------1.00-------------------------------
................................................................................................TTGTTTCACGGGGGATC.........................................................................................................................................171.000.00-------------------------------1.00------------
....................................................................................................................ACTGTATCCCTGTGGC......................................................................................................................1640.250.25--------0.25-----------------------------------
.......................................................................................................................................................ACTGAATGTGAAGACC...................................................................................1640.250.25---------0.25----------------------------------
.........................................................ATTTGAAGAACCTCC..................................................................................................................................................................................1580.120.12-------------------------------------------0.12

Antisense strand
TGTTTGTACTTCTGTGTGACCATGATTGTGTTTTTGTCACTCCCCTTCTCCTTGTTCATTTGAAGAACCTCCAACATGTTCTCCTCAGCAGTTTACTTGTTTCACGGGGGAAATTGACTGTATCCCTGTGGCTTGGCGGTGCGATGGGTTTACTGAATGTGAAGACCACAGTGATGAACTCAATTGTCCTGTATGCTCAGAGTCCCAGTTCCAGTGTGCCAGTGGGCAGTGTATTGATGGTGCCCTCCGA
........................................................................................................................((((.(((((((((.(((...((..........))..))).))).)))))).))))..........................................................................
..........................................................................................................107.......................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..................................................................................................................................................................................................GCTCAGAGTCCCAGTTCTG..................................... 192.000.00---------1.00------------------------1.00---------
...........................................................................................................................................................AATGTGAAGACCACAGTGGTT.......................................................................... 211.000.00-------------------------------------1.00------
.........................................CCCCTTCTCCTTGTTGACG.............................................................................................................................................................................................. 191.000.00------------------1.00-------------------------
.....GTACTTCTGTGTGACCTCG.................................................................................................................................................................................................................................. 191.000.00------------------------------------------1.00-
...........................................................................................................................................................................................................CCCAGTTCCAGTGTGTATT............................ 191.000.00--------------------------------1.00-----------
...........................................................................................................................................................................................................................................GATGGTGCCCTCCGATAG 181.000.00----------------------------1.00---------------
.............................................................................................................................................................................................................................GTGGGCAGTGTATTGCG............ 171.000.00-----------------------------1.00--------------
....................CATGATTGTGTTTTTGTTTG.................................................................................................................................................................................................................. 201.000.00--------------1.00-----------------------------
.....................................................................................................................................................................................................TGGAACTGGGACTCTG..................................... 1660.170.17----------0.17---------------------------------