ID: uc010sen.1_intron_18_0_chr12_3842377_r.5p
GENE: EFCAB4B(1)
chr12:3861981-3862230-


(1)
AGO1.ip
(1)
AGO2.ip
(7)
B-CELL
(2)
BRAIN
(4)
BREAST
(15)
CELL-LINE
(6)
CERVIX
(3)
HEART
(4)
LIVER
(2)
OTHER
(26)
SKIN

Sense strand
GAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAGGTAACGTGGAGGAAGGTTGAGGGTGGGCGGCCGGGGCGGCCGGGGGGCGGCGCTTCCTGCCTGCTCCTCCGGCTGCGAAGTGTGAGCGCGTGTCTGCCGCACATGGAACTCGCAGAGGGCCTGGATGGAGGCTGTGTGCCCTTGGGGGGGAACAGCTGGCTCCCCTGCCACCCCCAGGCCTGGCCTGGCCCTTGCTCCCC
.....................................................................................(((((((((((((((.((.....))))))))).))))))))...(((((.(((......))))))))..((..(((...)))..))...............................................................................
.................................................................................82.................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040012(GSM532897)
G648N. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
......................................................................................CGGCCGGGGGGCGGCCGC..................................................................................................................................................186.000.00--------2.00-----------1.00-----1.00------------1.00---1.00-------------------------
...............................................................................................................................................................TCGCAGAGGGCCTGGATG.........................................................................1816.006.00--2.00-2.002.00---------------------------------------------------------------
......................................................................................CGGCCGGGGGGCGGCCG...................................................................................................................................................173.000.00----------------1.00----------------------------1.00---------1.00-------------
.......................................................................................GGCCGGGGGGCGGCGCCGGC...............................................................................................................................................203.000.00-------1.00--------------1.00---------------------1.00------------------------
...................GGCAGGTCCACGGGAAGC.....................................................................................................................................................................................................................1812.002.00--------------2.00------------------------------------------------------
...............................................................................................................................................................TCGCAGAGGGCCTGGATGG........................................................................1912.002.00-2.00-------------------------------------------------------------------
.....................................................ACGTGGAGGAAGGTTGGGCG.................................................................................................................................................................................202.000.00-------------2.00-------------------------------------------------------
....................................................................................................................................................................GAGGGCCTGGATGGAGCCGG..................................................................202.000.00------2.00--------------------------------------------------------------
..............................................................................................................................................................CTCGCAGAGGGCCTGGATG.........................................................................1912.002.00--1.00---------------------1.00--------------------------------------------
......................................................................................CGGCCGGGGGGCGGCGCCG.................................................................................................................................................1922.001.00-------------------------1.00-------1.00-----------------------------------
.......................................................................................GGCCGGGGGGCGGCGCCGGA...............................................................................................................................................201.000.00-------------------------------------1.00-------------------------------
..............................................CAAGGTAACGTGGAGGA...........................................................................................................................................................................................1711.001.00---------1.00-----------------------------------------------------------
....................................................................................................................................................GCACATGGAACTCGCAGAG...................................................................................1911.001.00------------------------------------1.00--------------------------------
.....................................................................................................................................................................AGGGCCTGGATGGAGGCTG..................................................................1921.001.00----0.500.50---------------------------------------------------------------
..................................................................................................................................................CCGCACATGGAACTCGCAGAGGG.................................................................................2311.001.00--1.00------------------------------------------------------------------
........................................................................................................................................................................................................................................GCCTGGCCCTTGCTCCCATCC211.000.00------------------------------------------1.00--------------------------
...CCGAGCGGGCGGCGCGGC.....................................................................................................................................................................................................................................181.000.00------------------------------------------------1.00--------------------
.........................................................................................CCGGGGGGCGGCGCTAAAC..............................................................................................................................................191.000.00-------1.00-------------------------------------------------------------
......................................................................................CGGCCGGGGGGCGGCGC...................................................................................................................................................1721.001.00--------------------------------------------------------0.50-0.50----------
........................................................................................................................................................................GCCTGGATGGAGGCTGTTAA..............................................................201.000.00-----------------------1.00---------------------------------------------
........CGGGCGGCGCGGGCAGT.................................................................................................................................................................................................................................171.000.00----------------------------------------------1.00----------------------
............................................................................................................................................................AACTCGCAGAGGGCCTGGATG.........................................................................2111.001.00-1.00-------------------------------------------------------------------
........................................................................................................................................................ATGGAACTCGCAGAGGG.................................................................................1711.001.00-----------------------------1.00---------------------------------------
......................................................................................CGGCCGGGGGGCGGCGCC..................................................................................................................................................1821.001.00-------------------------------1.00-------------------------------------
......................................................................................CGGCCGGGGGGCGGCGCCGG................................................................................................................................................2021.001.00------------------1.00--------------------------------------------------
....................................................................................GGCGGCCGGGGGGCGGTCGC..................................................................................................................................................201.000.00------------------------------------------------------1.00--------------
.................................................................................................................................................................GCAGAGGGCCTGGATGAG.......................................................................181.000.00-----------------------------------------------1.00---------------------
.....GAGCGGGCGGCGCGGACGG..................................................................................................................................................................................................................................191.000.00-------------------1.00-------------------------------------------------
.....................................................................................................................................................CACATGGAACTCGCAGAG...................................................................................1811.001.00--------------------------------------1.00------------------------------
........................................................................................................................................................ATGGAACTCGCAGAGGGCCTG.............................................................................2111.001.00-1.00-------------------------------------------------------------------
..........................................................................................................................................................................CTGGATGGAGGCTGTGTGCC............................................................2011.001.00-------------------------------------------------1.00-------------------
........................................................................................................................................................ATGGAACTCGCAGAGGGC................................................................................1811.001.00----------------------------------1.00----------------------------------
.................................................................................................................................................................................................................CTCCCCTGCCACCCCCAGTCC....................211.000.00---------------------1.00-----------------------------------------------
................................................................................CCGGGGCGGCCGGGGGGTGG......................................................................................................................................................201.000.00-----------1.00---------------------------------------------------------
........................................................................GTGGGCGGCCGGGGCCA.................................................................................................................................................................171.000.00-----------------------------------------1.00---------------------------
..........................................................................................................................................................................CTGGATGGAGGCTGTCAT..............................................................181.000.00------------------------------1.00--------------------------------------
........................................................................................GCCGGGGGGCGGCGCCGGC...............................................................................................................................................1970.570.14-----------------0.14-------------------------------------------0.29-0.14-----
......................................................................................CGGCCGGGGGGCGGCG....................................................................................................................................................1680.500.50----------------0.25--------------------------------------------------0.120.12
........................................................................................................................................................................GCCTGGATGGAGGCTGTG................................................................1820.500.50---------------------------------------------------------0.50-----------
..........................................................................................................................................................................CTGGATGGAGGCTGTGTG..............................................................1830.330.33------------------------------------------------------------0.33--------
...................................................................................................................................................................................................................................GCCTGGCCTGGCCCTTGC.....1830.330.33-----------------------------------------------------------0.33---------
.....................................................................AGGGTGGGCGGCCGGGG....................................................................................................................................................................1740.250.25---0.25-----------------------------------------------------------------
............................................................GGAAGGTTGAGGGTGG..............................................................................................................................................................................1650.200.20--------------------------------------------------------------0.20------
........................................................................................GCCGGGGGGCGGCGCCGG................................................................................................................................................1870.140.14------------------------------------------------------------------0.14--
........................................................................................GCCGGGGGGCGGCGC...................................................................................................................................................1570.140.14-----------------------------------------------------------------0.14---
.....................................................................................GCGGCCGGGGGGCGGC.....................................................................................................................................................1680.120.12------------------0.12--------------------------------------------------

Antisense strand
GAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAGGTAACGTGGAGGAAGGTTGAGGGTGGGCGGCCGGGGCGGCCGGGGGGCGGCGCTTCCTGCCTGCTCCTCCGGCTGCGAAGTGTGAGCGCGTGTCTGCCGCACATGGAACTCGCAGAGGGCCTGGATGGAGGCTGTGTGCCCTTGGGGGGGAACAGCTGGCTCCCCTGCCACCCCCAGGCCTGGCCTGGCCCTTGCTCCCC
.....................................................................................(((((((((((((((.((.....))))))))).))))))))...(((((.(((......))))))))..((..(((...)))..))...............................................................................
.................................................................................82.................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040012(GSM532897)
G648N. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
...............................GGAAGCCTACACGCCAAA......................................................................................................................................................................................................... 186.000.006.00--------------------------------------------------------------------
.............................................................................CGGCCGGGGCGGCCGGGGGG......................................................................................................................................................... 203.000.00---1.00-----------1.00-1.00---------------------------------------------------
....................AGGCTTCCCGTGGACCTGC................................................................................................................................................................................................................... 1912.002.00-2.00-------------------------------------------------------------------
...............................GGAAGCCTACACGCCACA......................................................................................................................................................................................................... 182.000.002.00--------------------------------------------------------------------
...................AGGCTTCCCGTGGACCTGCC................................................................................................................................................................................................................... 2012.002.00------------2.00--------------------------------------------------------
....................................................................................GGCGGCCGGGGGGCGGGGGC.................................................................................................................................................. 202.000.00---1.00-----------1.00-----------------------------------------------------
....................................................................................GGCGGCCGGGGGGCGGCTGTC................................................................................................................................................. 211.000.00----------1.00----------------------------------------------------------
...............................GGAAGCCTACACGCCAAC......................................................................................................................................................................................................... 181.000.001.00--------------------------------------------------------------------
......................................................................................CGGCCGGGGGGCGGCAA................................................................................................................................................... 171.000.00-----------1.00---------------------------------------------------------
...............................................................................GCCGGGGCGGCCGGGGGA......................................................................................................................................................... 181.000.00---1.00-----------------------------------------------------------------
................................................................................................................................................................................................................GCTCCCCTGCCACCCCCAGG...................... 201.000.00----------------------------------------1.00----------------------------
...............................GGAAGCCTACACGCCAAT......................................................................................................................................................................................................... 181.000.001.00--------------------------------------------------------------------
.....................AGGCTTCCCGTGGACCTG................................................................................................................................................................................................................... 1811.001.00---------------------------------------------------1.00-----------------
................................................................................................GCGGCGCTTCCTGCCTAGCT...................................................................................................................................... 201.000.00----------------------------------------------------1.00----------------
....................................................................................GGCGGCCGGGGGGCGGGTC................................................................................................................................................... 191.000.00---------------------------1.00-----------------------------------------
.............................................................................CGGCCGGGGCGGCCGGGG........................................................................................................................................................... 181.000.00---------1.00-----------------------------------------------------------
.....................................................................................GCGGCCGGGGGGCGGCTCG.................................................................................................................................................. 1981.000.00-----------------------------------1.00---------------------------------
.............................................................................CGGCCGGGGCGGCCGGGGGGGG....................................................................................................................................................... 221.000.00--------------------------------1.00------------------------------------
............CCGTGGACCTGCCCGCGCCG.......................................................................................................................................................................................................................... 2011.001.00----------------------------1.00----------------------------------------
......AGCGGGCGGCGCGGGGGCC................................................................................................................................................................................................................................. 191.000.00-----------------------------------------------------1.00---------------
.........TGGACCTGCCCGCGCCGCCC............................................................................................................................................................................................................................. 2011.001.00--------------------------------------------------1.00------------------
.......................................................................................GGCCGGGGGGCGGCGCCCGC............................................................................................................................................... 201.000.00----------1.00----------------------------------------------------------
..............................GGGAAGCCTACACGCCAA.......................................................................................................................................................................................................... 181.000.001.00--------------------------------------------------------------------
.....................................................................................................................................................TGCGAGTTCCATGTG...................................................................................... 1570.140.14----------------------------------------------------------------0.14----