ID: uc010ruq.1_intron_0_0_chr11_102218108_f.5p
GENE: (1)
chr11:102218058-102218307+


(1)
AGO2.ip 		(7)
B-CELL 		(6)
BREAST 		(18)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(4)
LIVER 		(3)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
AGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCGGTGAGTGCTGCTCCTTCCGGGCTCGGGCGGCGTGGGGCGGGTGGGGACGCGAGGGCCCGCGGGGGCCCACTTCCCTGATGTGGCGGCGAACGAGGAAGGACGGGGCCTGAGGCCCTTCGGCCAAGGGTCGAGGGTCGCCGGGGGCTCTCTGCTTTCTACTCTCGCCAAGGTTTTATTGGATTCGGAAGCCCCAACTTCGA
.......................................................................................................................................................(((((((..((((((((((((...)))))))))..)))..)))))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)
.................................................................................................................................................AAGGACGGGGCCTGAGGC.......................................................................................18110.0010.008.001.00--------------------------1.00-------------------------------
..................................................................................................................................................................................CGAGGGTCGCCGGGGGCT......................................................1817.007.007.00-----------------------------------------------------------
..................................................................................................................................................AGGACGGGGCCTGAGGC.......................................................................................1715.005.004.00--------------------------------------------1.00--------------
.............................................................................CGGCGTGGGGCGGGTGGG...........................................................................................................................................................1823.503.50---0.50----1.00------1.00-----0.50----------------------------------0.50---
..........................................................................................................................................................................CCAAGGGTCGAGGGT.................................................................1513.003.00----3.00-------------------------------------------------------
.............................................................................................................................................GAGGAAGGACGGGGCCTGAGGC.......................................................................................2213.003.00---3.00--------------------------------------------------------
...............................................................................................................................................GGAAGGACGGGGCCTGAGGC.......................................................................................2013.003.00---------2.00--------------------1.00-----------------------------
..........................................................................................................................................................................................................................GGTTTTATTGGATTCGGAAGC...........2112.002.00----------------2.00-------------------------------------------
..........................................................................................................................................AACGAGGAAGGACGGGGC..............................................................................................1812.002.00-----------------------------1.00------1.00-----------------------
............................................................................................................................................CGAGGAAGGACGGGGCCTGA..........................................................................................2012.002.00-----------1.001.00-----------------------------------------------
........................................................................TCGGGCGGCGTGGGGCGGGTTA............................................................................................................................................................222.000.00-------2.00----------------------------------------------------
.................................................................................................CGCGAGGGCCCGCGGCGGG......................................................................................................................................192.000.00----------2.00-------------------------------------------------
........................................................................................................................................................................................................................AAGGTTTTATTGGATTCGGAAGCCC.........2512.002.00-2.00----------------------------------------------------------
.............................................................................................................................................GAGGAAGGACGGGGCCTG...........................................................................................1812.002.00------------1.00-1.00---------------------------------------------
................................................................TTCCGGGCTCGGGCGGCGTGGGGCGGGT..............................................................................................................................................................2812.002.00-----2.00------------------------------------------------------
........................................................................TCGGGCGGCGTGGGGCGGGTA.............................................................................................................................................................212.000.00--------1.00------1.00--------------------------------------------
........................................................................TCGGGCGGCGTGGGGCGGG...............................................................................................................................................................1912.002.00--------------------------------------1.00---------------1.00-----
...................................................................CGGGCTCGGGCGGCGTGGG....................................................................................................................................................................1921.501.50--0.50----------------0.50---------------------------------------0.50
.........................................................................................................................................................................................................CTTTCTACTCTCGCCAAGGTTTTATTGGATTCG................3311.001.00-----------------------------------------1.00------------------
..............................................................................GGCGTGGGGCGGGTGGTT..........................................................................................................................................................181.000.00--------------------------------1.00---------------------------
............................................................................................................................................................CTGAGGCCCTTCGGCCAAGG..........................................................................2011.001.00-------------1.00----------------------------------------------
.........................................................................................................................................GAACGAGGAAGGACGGGG...............................................................................................1811.001.00---------------------------------1.00--------------------------
......................................................................................................................................................CGGGGCCTGAGGCCCCGG..................................................................................181.000.00-----------------------------------------------------1.00------
.........................................................................................................CCCGCGGGGGCCCACCGG...............................................................................................................................181.000.00-------------------------------1.00----------------------------
.................................................................................................CGCGAGGGCCCGCGGGGGG......................................................................................................................................191.000.00------------------------------------------------1.00-----------
......................CTTCCGTGTTTGCTGCGCCCGCACTGC.........................................................................................................................................................................................................2711.001.00-----------------1.00------------------------------------------
...............................................................................................................................................................................................................ACTCTCGCCAAGGTTTT..........................1711.001.00------------------------1.00-----------------------------------
.............GCCGCGCAGCTTCCGTG............................................................................................................................................................................................................................1711.001.00-----------------1.00------------------------------------------
..........................................................................................................................................AACGAGGAAGGACGGGGT..............................................................................................181.000.00---------------------------------------------------1.00--------
................................................................................................................................................GAAGGACGGGGCCTGAGGC.......................................................................................1911.001.00--------------------------------------------------1.00---------
................................................................................................ACGCGAGGGCCCGCGGGGGCCCACTTCC..............................................................................................................................2811.001.00--------------------------1.00---------------------------------
...................................................................CGGGCTCGGGCGGCGTGGGGCGGGTGGG...........................................................................................................................................................2811.001.00--------------1.00---------------------------------------------
..................................................................................................................................................AGGACGGGGCCTGAGGCC......................................................................................1811.001.00-1.00----------------------------------------------------------
.........................................................................................................................................GAACGAGGAAGGACGGG................................................................................................1711.001.00------------------1.00-----------------------------------------
.............................................................................................................................................................................AGGGTCGAGGGTCGCCGG...........................................................1811.001.00--1.00---------------------------------------------------------
..................................................................................................................................................................................................................................TGGATTCGGAAGCCCCAACT....2011.001.00---------------------------------------1.00--------------------
.........................................................................................................................................................................................................................AGGTTTTATTGGATTCGGAAGC...........2211.001.00-------------1.00----------------------------------------------
....................................................................................................................................................................................................................CGCCAAGGTTTTATTG......................1611.001.00---------------------1.00--------------------------------------
..................................................GTGAGTGCTGCTCCTTCCGGGCTCGGGT............................................................................................................................................................................281.000.00-----------------------------------------------1.00------------
..............................................................................................................................................AGGAAGGACGGGGCCTGAGGCCCTCCGG................................................................................281.000.00--------------------------------------------1.00---------------
...........................................................................................................................................ACGAGGAAGGACGGGGCCTGAG.........................................................................................2211.001.00----------------------------------------------------1.00-------
.............................................................................................................................................GAGGAAGGACGGGGCCTGAGGCCCTTC..................................................................................2711.001.00-----------------------------------1.00------------------------
...................................................................................GGGGCGGGTGGGGACGAAGG...................................................................................................................................................201.000.00----------------------------------------1.00-------------------
..................................................................................TGGGGCGGGTGGGGATC.......................................................................................................................................................171.000.00------------------------------------------1.00-----------------
............................................................................................................................................CGAGGAAGGACGGGGCCTGAGGCCCTA...................................................................................271.000.00----------------------------------1.00-------------------------
...............................................................................................................................................GGAAGGACGGGGCCTGA..........................................................................................1721.001.00-----------1.00------------------------------------------------
.......................................................................................CGGGTGGGGACGCGATG..................................................................................................................................................171.000.00------1.00-----------------------------------------------------
.............................................................................................................................................GAGGAAGGACGGGGCCTGAGGCCC.....................................................................................2411.001.00-------------------------------------------1.00----------------
............................................................................................................................................................................AAGGGTCGAGGGTCGCCGGGGGC.......................................................2311.001.00--1.00---------------------------------------------------------
...........................................................................................................................................ACGAGGAAGGACGGGGCCTG...........................................................................................2011.001.00-------------------1.00----------------------------------------
..................................................................CCGGGCTCGGGCGGCGTGGGA...................................................................................................................................................................211.000.00---------------------------1.00--------------------------------
........AGGCAGCCGCGCAGCTCTCA..............................................................................................................................................................................................................................201.000.00--1.00---------------------------------------------------------
..........................................................................................................................................AACGAGGAAGGACGGGGCC.............................................................................................1911.001.00----------------------------------------------1.00-------------
...................................................................CGGGCTCGGGCGGCGTGG.....................................................................................................................................................................1820.500.50-------------------------------------------------------0.50----
.........................................................................CGGGCGGCGTGGGGCGGG...............................................................................................................................................................1840.500.50----------------------------------------------------------0.50-
...........................................CACTGCGGTGAGTGCTG..............................................................................................................................................................................................1720.500.50--------------------0.50---------------------------------------
..............................................................................................................................................AGGAAGGACGGGGCCTGA..........................................................................................1820.500.50---------------------------------------------------------0.50--

Antisense strand
AGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCGGTGAGTGCTGCTCCTTCCGGGCTCGGGCGGCGTGGGGCGGGTGGGGACGCGAGGGCCCGCGGGGGCCCACTTCCCTGATGTGGCGGCGAACGAGGAAGGACGGGGCCTGAGGCCCTTCGGCCAAGGGTCGAGGGTCGCCGGGGGCTCTCTGCTTTCTACTCTCGCCAAGGTTTTATTGGATTCGGAAGCCCCAACTTCGA
.......................................................................................................................................................(((((((..((((((((((((...)))))))))..)))..)))))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)
....................................................................................................................................................................................................CGAGAGTAGAAAGCAGAG.................................... 1814.004.004.00-----------------------------------------------------------
...........................................................................GGCGGCGTGGGGCGGGTGTAGT......................................................................................................................................................... 221.000.00--------------------1.00---------------------------------------
.......................................................................................................................................................................................................TGGCGAGAGTAGAAAGCA................................. 1811.001.00-------------------------------------------------1.00----------
.........................................................................CGGGCGGCGTGGGGCGGC............................................................................................................................................................... 181.000.00----------------------1.00-------------------------------------
...........................................................................GGCGGCGTGGGGCGGGGC............................................................................................................................................................. 181.000.00-------------------------1.00----------------------------------
.......................................................TGCTGCTCCTTCCGGAGG................................................................................................................................................................................. 181.000.00-----------------------1.00------------------------------------
..........................................................................GGGCGGCGTGGGGCGCGGG............................................................................................................................................................. 191.000.00------------------1.00-----------------------------------------
......................................................................................................GGGCCCGCGGGGGCCCG................................................................................................................................... 171.000.00-------------------------------------1.00----------------------
..............................................................................................................................................................................GGGTCGAGGGTCGCCGGAG......................................................... 191.000.00------1.00-----------------------------------------------------
.........................................................................CCCGCCCCACGCCGCCCG............................................................................................................................................................... 1840.250.25----------------------0.25-------------------------------------