| (1) BRAIN | (3) BREAST | (13) CELL-LINE | (1) CERVIX | (2) HEART | (1) KIDNEY | (1) LIVER | (1) OTHER | (1) RRP40.ip | (2) SKIN | (1) TESTES | (1) UTERUS | (1) XRN.ip |
| TAGTAGAGTACCTTGTGTTTCTTTCAGTTTTTCCCAATAAACCATTATAATTTCCCTGTCTCCAGGAGCTGATGTCTGATTTATTTTTGTATCCCACATTCACAGATCTTAACATTTTACAAGATAGTTCCAAGTAACCTTATTTATTCATTTAAGTAAGTAGTGAACAATTATTAACTTGGTTCCTAAATCTTTTCTAGGATATTAGGAATTTACGATTTGCTCATAAACCTGAGGGGCGGACAAGAAG ................................................................(((((((((((..(((((.....(((.....))).....)))))...))))).........))))))........(((((((......)))))))........................................................................................... ..................................................51..........................................................................................................159......................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189786 | SRR189787 | SRR189784 | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR189782 | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR553576(SRX182782) source: Testis. (testes) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR343336 | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | TAX577740(Rovira) total RNA. (breast) | SRR189785 | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | TAX577739(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | TAX577738(Rovira) total RNA. (breast) | SRR040035(GSM532920) G001T. (cervix) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR039637(GSM518474) THP1_total_sRNAs. (cell line) | SRR343337 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................TCCCTGTCTCCAGGAGCTCACG................................................................................................................................................................................ | 22 | 69.00 | 0.00 | 48.00 | 15.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGCTCAC................................................................................................................................................................................. | 21 | 8.00 | 0.00 | 2.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGCTCA.................................................................................................................................................................................. | 20 | 8.00 | 0.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | |
| ......................................................................................................................................................................................................AGGATATTAGGAATTTACGATTTGCT.......................... | 26 | 1 | 6.00 | 6.00 | - | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................TCCCTGTCTCCAGGAGCTCAA................................................................................................................................................................................. | 21 | 4.00 | 0.00 | 1.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................ACCTTATTTATTCATTTATTG............................................................................................. | 21 | 4.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................CCCTGTCTCCAGGAGCTCACG................................................................................................................................................................................ | 21 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGCTCACA................................................................................................................................................................................ | 22 | 3.00 | 0.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................CATAAACCTGAGGGGCGG........ | 18 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................TCCCTGTCTCCAGGAGCTC................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................AACCTGAGGGGCGGACAAG... | 19 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - |
| ............................TTTTCCCAATAAACCAGA............................................................................................................................................................................................................ | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ....................................................................................................................................................................................................................TTACGATTTGCTCATAAACCTGA............... | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TACGATTTGCTCATAAACCTGAGGGGC.......... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................CCTTATTTATTCATTTCTG.............................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................CCTTATTTATTCATTTATTTG............................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................ATATTAGGAATTTACGATTTGCTCATAA..................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................CCTTATTTATTCATTTATAC............................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| .......................................................................................................................................AACCTTATTTATTCATTTATTTG............................................................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGCTCAAG................................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................CCTTATTTATTCATTAAG............................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGCTGACGT............................................................................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......GTACCTTGTGTTTCTACTA................................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................TACGATTTGCTCATAAACCTGAGG............. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................................................GATTTATTTTTGTATTAAC.......................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ......AGTACCTTGTGTTTCTTTCAGTTTTTCCC....................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................TCCCTGTCTCCAGGAGCTCAGG................................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................ACAATTATTAACTTGGAGC................................................................. | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................ACCTTATTTATTCATTTATTTG............................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................AACCTGAGGGGCGGACAAGA.. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................CAGGAGCTGATGTCTCCTC......................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGCTCGCG................................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................CCTGTCTCCAGGAGCTCACG................................................................................................................................................................................ | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................TCCCTGTCTCCAGGAGC..................................................................................................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TAGTAGAGTACCTTGTGTTTCTTTCAGTTTTTCCCAATAAACCATTATAATTTCCCTGTCTCCAGGAGCTGATGTCTGATTTATTTTTGTATCCCACATTCACAGATCTTAACATTTTACAAGATAGTTCCAAGTAACCTTATTTATTCATTTAAGTAAGTAGTGAACAATTATTAACTTGGTTCCTAAATCTTTTCTAGGATATTAGGAATTTACGATTTGCTCATAAACCTGAGGGGCGGACAAGAAG ................................................................(((((((((((..(((((.....(((.....))).....)))))...))))).........))))))........(((((((......)))))))........................................................................................... ..................................................51..........................................................................................................159......................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189786 | SRR189787 | SRR189784 | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR189782 | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR553576(SRX182782) source: Testis. (testes) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR343336 | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | TAX577740(Rovira) total RNA. (breast) | SRR189785 | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | TAX577739(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | TAX577738(Rovira) total RNA. (breast) | SRR040035(GSM532920) G001T. (cervix) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR039637(GSM518474) THP1_total_sRNAs. (cell line) | SRR343337 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................ATTCACAGATCTTAACTCTG..................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |