ID: uc010rtk.1_intron_5_0_chr11_85692819_r
GENE: (6)
chr11:85692769-85692964-


(1)
AGO3.ip 		(2)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(8)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
XRN.ip

Sense strand
CAAGTTAGTATCTGATGACTTGGATTCATCTTTAGCCAACCTTGTGGGCAGTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAGATCTTGGCATCGGAAATGGAACCACTAAGAAGTGAGTGTTTAATATACAC
....................................................(((((.......((((((.............((((.((((....)))).))))..))))))......)))))........................................................................
..................................................51.............................................................................................146................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAG..................................................96143.0043.0020.0023.00--------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAGAA................................................98117.008.001.0015.00--------------------------------------------1.00-----
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCT.........................................................................73111.0011.00-11.00--------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTA...................................................95111.0011.008.003.00--------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATG...........................................................................7118.008.007.00-1.00-------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAGA.................................................9718.008.00-7.001.00-------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTC..........................................................................................5617.007.007.00---------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATA................................................................................6617.007.007.00---------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTC......................................................9215.005.004.00-1.00-------------------------------------------------
............................................................................................................................................................CGGAAATGGAACCACT........................1614.004.00------4.00---------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAAT.........................................................................................................................2514.004.00---------3.00-------------------------1.00----------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAGAAA...............................................9913.008.002.001.00--------------------------------------------------
.....................................................................................................................................................TTGGCATCGGAAATGGAAC............................1913.003.00-----1.00-------2.00--------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATC........................................................................................................................2613.003.00-----------------1.001.00-----------------1.00---------------
.........................................................................................................................................................CATCGGAAATGGAACCA..........................1712.002.00----1.00-------------------------------------1.00---------
.......................................................................................................................................................GGCATCGGAAATGGAACCACT........................2112.002.00----1.00--1.00--------------------------------------------
......AGTATCTGATGACTTGGATTCA........................................................................................................................................................................2212.002.00--------------2.00-------------------------------------
.................................................AGTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAG..................................................9712.002.002.00---------------------------------------------------
..................................................................................................................................................ATCTTGGCATCGGAAATG................................1812.002.00-------1.00--------------1.00-----------------------------
......................................................................................................................................................TGGCATCGGAAATGGAACCA..........................2012.002.00---1.00-----------------------------------1.00------------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCA..........................2112.002.00---1.00----1.00-------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCT............................................................8612.002.00--2.00-------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACT...............................................................................................5112.002.002.00---------------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCT....................................................9412.002.002.00---------------------------------------------------
................GACTTGGATTCATCTTTAGCC...............................................................................................................................................................2112.002.00----2.00-----------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTA...............................................................831.000.00--1.00-------------------------------------------------
..........................................................................................................................TTTTTTGTTTTTCTCGGG........................................................181.000.00----------------------------------1.00-----------------
....................................................................................................................................................CTTGGCATCGGAAATGGAACCACTAA......................2611.001.00---------------------1.00------------------------------
............TGATGACTTGGATTCATCT.....................................................................................................................................................................1911.001.00------------------------------1.00---------------------
..AGTTAGTATCTGATGACTTGGATTCAT.......................................................................................................................................................................2711.001.00---1.00------------------------------------------------
......................................................................................................................................................TGGCATCGGAAATGGAACCACTAAGAATGA................301.000.00--------------------------1.00-------------------------
...............................................................................................................................................................AAATGGAACCACTAAGAATGAT...............221.000.00-----------1.00----------------------------------------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCACTAAGAA...................2811.001.00----------------------------1.00-----------------------
....................................................................................................................................................CTTGGCATCGGAAATGGAACCACTAAG.....................2711.001.00--------------------------------------1.00-------------
....................................................................................................................AAATGCTTTTTTGTTTAGTT............................................................201.000.00-------------------------------------------------1.00--
............................................................................................................................................................CGGAAATGGAACCACTAAGAATGA................241.000.00------------1.00---------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTTAT.........................................................................................................................2511.001.00--------------------1.00-------------------------------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCT..........................211.000.00-------------------1.00--------------------------------
........................................................................................................................................................GCATCGGAAATGGAACCACTAAGAA...................2511.001.00-------1.00--------------------------------------------
......................................................................................................................................................TGGCATCGGAAATGGAACC...........................1911.001.00-------------------------1.00--------------------------
....................................................................................................................................................CTTGGCATCGGAAATGGAA.............................1911.001.00------------------------------------------------1.00---
.....................................AACCTTGTGGGCAGTAAGTAGTCT.......................................................................................................................................2411.001.00-------1.00--------------------------------------------
....................................................................................................................................................CTTGGCATCGGAAATGGA..............................1811.001.00-------------------------------1.00--------------------
....................................................................................................................................................CTTGGCATCGGAAATGGAACCACT........................2411.001.00-----------------------------------------1.00----------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCACTA.......................2411.001.00----------------1.00-----------------------------------
....................TGGATTCATCTTTAGCCAACCTTG........................................................................................................................................................2411.001.00-------------------------------------------1.00--------
.........................................................................................................................................................CATCGGAAATGGAACC...........................1611.001.00--------------------------------------------1.00-------
.............................................................................................................................TTTGTTTTTCTCCTTTCCTAGAA................................................231.000.00----------------------------------------1.00-----------
..............................................................................................................................................................GAAATGGAACCACTAAGAATG.................211.000.00---1.00------------------------------------------------
...................................................................................................................................................TCTTGGCATCGGAAATGGAACCAC.........................2411.001.00-----------------------1.00----------------------------
......................................................................................................................................................TGGCATCGGAAATGGAACCACTAAGAAATC................301.000.00--------1.00-------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTC.............................................................8511.001.00--1.00-------------------------------------------------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCACTAAGA....................2711.001.00-----1.00----------------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCT.......................................................................................................................2711.001.00------------------------1.00---------------------------
...........................................................................................................................................................TCGGAAATGGAACCACTAAGAATG.................241.000.00----------1.00-----------------------------------------
..................................................GTAAGTAGTCTTTGGATACGTT............................................................................................................................2211.001.00-----------------------------1.00----------------------
.........................................................................................................................CTTTTTTGTTTTTCTGGTC........................................................191.000.00---------------------------------1.00------------------
..................................................GTAAGTAGTCTTTGGATACGTTAATCTT......................................................................................................................2811.001.00--------------------------------1.00-------------------
...............................................GCAGTAAGTAGTCTTTGG...................................................................................................................................1811.001.00----------1.00-----------------------------------------
............................................................................................................................................................CGGAAATGGAACCAC.........................1521.001.00------------1.00---------------------------------------
......................................................................................................................................................TGGCATCGGAAATGGAACCACT........................2211.001.00-----1.00----------------------------------------------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCACTAAGAATG.................3011.001.00--------1.00-------------------------------------------
.....................................................................................................................................................TTGGCATCGGAAATGGAACCACT........................2311.001.00-----------1.00----------------------------------------
.............GATGACTTGGATTCATCTTTAGCCAACC...........................................................................................................................................................2811.001.00-----1.00----------------------------------------------
....................................................................................................................................................CTTGGCATCGGAAATGGAACC...........................2111.001.00---------------------------1.00------------------------
.........................................................................................................................................................CATCGGAAATGGAACCACTAAGAATG.................261.000.00---------------1.00------------------------------------
......................................................................................................................................................TGGCATCGGAAATGGAAC............................1811.001.00---1.00------------------------------------------------
...........CTGATGACTTGGATTCATC......................................................................................................................................................................1911.001.00---------------------------------------------1.00------
..AGTTAGTATCTGATGACTTGGAT...........................................................................................................................................................................2311.001.00-------------------------------------1.00--------------
...GTTAGTATCTGATGACTTGGATTC.........................................................................................................................................................................2411.001.00---1.00------------------------------------------------
......................................................................................................................................................TGGCATCGGAAATGGAA.............................1720.500.50--------------------------------------------------0.50-
.....................................................................................................................................................TTGGCATCGGAAATGG...............................1620.500.50----------------0.50-----------------------------------
..................................................GTAAGTAGTCTTTGGATA................................................................................................................................1820.500.50---------------0.50------------------------------------
..........................................................................................................................................................ATCGGAAATGGAACC...........................1530.330.33---------------------------------------------------0.33

Antisense strand
CAAGTTAGTATCTGATGACTTGGATTCATCTTTAGCCAACCTTGTGGGCAGTAAGTAGTCTTTGGATACGTTAATCTTCTTTTATGTTGTTTTATTAAACTGCGTCTCGTGTTATAAAATGCTTTTTTGTTTTTCTCCTTTCCTAGATCTTGGCATCGGAAATGGAACCACTAAGAAGTGAGTGTTTAATATACAC
....................................................(((((.......((((((.............((((.((((....)))).))))..))))))......)))))........................................................................
..................................................51.............................................................................................146................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................TTCTTTTATGTTGTTTTGCA.................................................................................................... 201.000.00-----------------------------------------------1.00----