ID: uc010rtc.1_intron_1_0_chr11_85372794_r.3p
GENE: CREBZF(3)
chr11:85372744-85372993-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(4)
HELA 		(3)
LIVER 		(8)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
GTTGGAAAGATTATTTGAAATGACTAATTTGTGCTATCTTTATGAAATATGTTAAATGTAGCTTTTTTGAAACAGAAGCCTTGAATTGAAATTTAACTAATACTTGAACATTTTGTATATATTTCTTTGTATATAATTTTGTGCAGTACCAATGACAAAAATATGGTGTCATAATAAAACCAGGTTTGTTGATCTTTTAGTTATGGGCTCAAAGAATTTATTCATCTCTAACATGATATTGGAAAATAAT
......................................................................................(((((.(((((....(((((.(((..(((((((((......)))))))))...))).........((((((.........))))))........)))))..)))))..)))))...................................................
...................................................................................84..................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR343335SRR343334SRR189784DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR189783SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
........................................................................................AAATTTAACTAATACTTGAAC.............................................................................................................................................211134.00134.00123.00--11.00------------------------------------------
.................AAATGACTAATTTGTAAAG......................................................................................................................................................................................................................19110.000.00-54.0056.00-------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACATTTTG.......................................................................................................................................27124.0024.0015.00--4.00-3.002.00---------------------------------------
........................................................................................AAATTTAACTAATACTTGAACATT..........................................................................................................................................24123.0023.0017.00--6.00------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACA............................................................................................................................................22116.0016.0014.00--2.00------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACATTTT........................................................................................................................................26115.0015.0012.00--3.00------------------------------------------
.........................................................................................AATTTAACTAATACTTGAAC.............................................................................................................................................20110.0010.0010.00---------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACAT...........................................................................................................................................23110.0010.007.00--1.00--2.00---------------------------------------
........................................................................................AAATTTAACTAATACTTGAACATTT.........................................................................................................................................2519.009.008.00--1.00------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACTTTG.........................................................................................................................................2516.00134.00---5.00-1.00----------------------------------------
........................................................................................AAATTTAACTAATACTTGAA..............................................................................................................................................2015.005.004.00--1.00------------------------------------------
.......................................................................................................................................ATTTTGTGCAGTACCAATGACAAAAATATGGTGTCATAATAAAACCAGGTTTGTTGATCTTTTAG..................................................6515.005.00----5.00-----------------------------------------
....................................................................................................................................ATAATTTTGTGCAGTACCAATGACAAAAATATGGTGTCATAATAAAACCAGGTTTGTTGATCTTTTAG..................................................6815.005.00----5.00-----------------------------------------
......................................................................................................................................................................................................AGTTATGGGCTCAAAGAA..................................1814.004.00-------4.00--------------------------------------
.........................................................................................AATTTAACTAATACTTGAACATT..........................................................................................................................................2314.004.004.00---------------------------------------------
....................................................................GAAACAGAAGCCTTGAATT...................................................................................................................................................................1913.003.00-----------------------------1.001.00-1.00-------------
...........................................................................................................................................................................................................TGGGCTCAAAGAATTCTG.............................183.000.00----------------1.00-1.00----------------1.00----------
..........................................................................................................AACATTTTGTATATATTTCTTTG.........................................................................................................................2313.003.003.00---------------------------------------------
...............................................................................................................................................................................AAAACCAGGTTTGTTGA..........................................................1732.672.67-------------2.67--------------------------------
..........................................................................................................AACATTTTGTATATATTTCT............................................................................................................................2012.002.001.00----------1.00----------------------------------
........................................................................................AAATTTAACTAATACTTGAACTT...........................................................................................................................................2312.00134.00---2.00------------------------------------------
............................................................................................TTAACTAATACTTGAACATTTTG.......................................................................................................................................2312.002.00---1.00--1.00---------------------------------------
.........................................................................................AATTTAACTAATACTTGAACATTTTG.......................................................................................................................................2612.002.001.00--1.00------------------------------------------
.....................................................................AAACAGAAGCCTTGAATTGAAATTT............................................................................................................................................................2512.002.00-------1.00-1.00------------------------------------
.................................................................TTTGAAACAGAAGCCTTGAATTG..................................................................................................................................................................2312.002.00--------1.00-------1.00-----------------------------
...............................................................TTTTTGAAACAGAAGCCTTGAATTG..................................................................................................................................................................2512.002.00--------2.00-------------------------------------
.........................................................................................AATTTAACTAATACTTGAACAT...........................................................................................................................................2212.002.002.00---------------------------------------------
.....................................................................AAACAGAAGCCTTGAATT...................................................................................................................................................................1812.002.00---------1.00--1.00---------------------------------
........................................................................................AAATTTAACTAATACTTGCAC.............................................................................................................................................212.000.002.00---------------------------------------------
.....................................................................................................................................................CAATGACAAAAATATGGTGTCATAAAA..........................................................................272.000.00-----------2.00----------------------------------
........................................................................................................................................................................TCATAATAAAACCAGGTTTGTTGATCTTT.....................................................2912.002.00------2.00---------------------------------------
............................................................................................TTAACTAATACTTGAACACT..........................................................................................................................................202.000.00---2.00------------------------------------------
..........................................................................................................................................................ACAAAAATATGGTGTCATAAT...........................................................................2112.002.002.00---------------------------------------------
...............................................................................................................................................................................................ATCTTTTAGTTATGGGCTCAAAG....................................2312.002.002.00---------------------------------------------
.....................................................................AAACAGAAGCCTTGAATTG..................................................................................................................................................................1912.002.00------------1.00-----------------------------1.00---
.......................................................................ACAGAAGCCTTGAATTGAAATTT............................................................................................................................................................2312.002.00---------------2.00------------------------------
.....................................................................AAACAGAAGCCTTGAATTGAC................................................................................................................................................................211.000.00----------------------------------------1.00-----
................................................................................................................................................................................AAACCAGGTTTGTTGATCTTTTAGTTATGGG...........................................3111.001.00-------------------------------------1.00--------
.................................................................................................................................TATATAATTTTGTGCAGTACC....................................................................................................2111.001.001.00---------------------------------------------
.........................................................................................................................................................................................TTGTTGATCTTTTAGTTATGGGC..........................................2311.001.00-------------------------------1.00--------------
......................................................AATGTAGCTTTTTTGAAAC.................................................................................................................................................................................1911.001.00--------1.00-------------------------------------
.............................................................................................................................................................................ATAAAACCAGGTTTGTTGAT.........................................................2011.001.00--------------------1.00-------------------------
........................................................................................AAATTTAACTAATACTTGAGC.............................................................................................................................................2111.001.001.00---------------------------------------------
...............................................................................................ACTAATACTTGAACATTATG.......................................................................................................................................201.000.00-----1.00----------------------------------------
............................................AAATATGTTAAATGTAGCTTTTTT......................................................................................................................................................................................2411.001.00---1.00------------------------------------------
..................................................................................................................................................................................ACCAGGTTTGTTGATCTTTTAGTTATGGGC..........................................3011.001.00----------1.00-----------------------------------
.........................................................................................................................................................................CATAATAAAACCAGGTCTG..............................................................191.000.00---1.00------------------------------------------
.............................................AATATGTTAAATGTAGCT...........................................................................................................................................................................................1811.001.00-------------------------------------------1.00--
.........................................................GTAGCTTTTTTGAAACAGA..............................................................................................................................................................................1911.001.00--------------------------------------1.00-------
.......................................................................................................................................................ATGACAAAAATATGGTGTCATA.............................................................................2211.001.00-----------------1.00----------------------------
.......................................................................................................................................................................................................GTTATGGGCTCAAAGAATTTATTC...........................2411.001.00----------------------------------1.00-----------
..................................................................TTGAAACAGAAGCCTTGAATT...................................................................................................................................................................2111.001.00-----------------------------------------1.00----
.....................................................................AAACAGAAGCCTTGAATTGAA................................................................................................................................................................2111.001.00---------1.00------------------------------------
..................................................................................................................................................................................ACCAGGTTTGTTGATCTTTT....................................................2011.001.00---------------------------------------1.00------
...................................................................................AATTGAAATTTAACTAATACTTGAACATTT.........................................................................................................................................3011.001.001.00---------------------------------------------
......................ACTAATTTGTGCTATCTTTAT...............................................................................................................................................................................................................2111.001.001.00---------------------------------------------
.....................................................................AAACAGAAGCCTTGAATTGAAATTTA...........................................................................................................................................................2611.001.00--------1.00-------------------------------------
...........................................................................AAGCCTTGAATTGAAATTTAACTA.......................................................................................................................................................2411.001.00----------1.00-----------------------------------
..........................................................................................................AACATTTTGTATATATTTCTTTA.........................................................................................................................231.000.001.00---------------------------------------------
..................................................................TTGAAACAGAAGCCTTGAATTGA.................................................................................................................................................................2311.001.00---------------------------1.00------------------
........................................................................................AAATTTAACTAATACTTAAAC.............................................................................................................................................211.000.00---1.00------------------------------------------
........................................................................................................................................................................TCATAATAAAACCAGGTTTGTTGATCTTTTA...................................................3111.001.001.00---------------------------------------------
.................AAATGACTAATTTGTAGAG......................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------
............................................................................................................................................................................................................GGGCTCAAAGAATTTATTCA..........................2011.001.00--------------------------1.00-------------------
...................................................................TGAAACAGAAGCCTTGAATTGAA................................................................................................................................................................2311.001.00------------1.00---------------------------------
........................................................................................AAATTTAACTAATACTTGAACATCTTG.......................................................................................................................................2711.0010.00---1.00------------------------------------------
.................................................................................................................................................................................AACCAGGTTTGTTGATCTTTTA...................................................2211.001.00---------------------1.00------------------------
...........................................................................................TTTAACTAATACTTGAAC.............................................................................................................................................1811.001.001.00---------------------------------------------
...........................................................................................................................................................................................................TGGGCTCAAAGAATTTATTCACCTC......................251.000.00---------------------------------1.00------------
........................................................................................AAATTTAACTAATACTTGA...............................................................................................................................................1911.001.001.00---------------------------------------------
.................................................................................TGAATTGAAATTTAACTAACAC...................................................................................................................................................221.000.00----------------------1.00-----------------------
........................................................................................................................................................................TCATAATAAAACCAGGTCTG..............................................................201.000.00---1.00------------------------------------------
.................AAATGACTAATTTGTGAAG......................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------
....................................................TAAATGTAGCTTTTTTGAAACAGAAGCC..........................................................................................................................................................................2811.001.00--------------1.00-------------------------------
........................................................................................................................................................................TCATAATAAAACCAGGCG................................................................181.000.00-----1.00----------------------------------------
..................................................................................................AATACTTGAACATTTTGTATATATTTCTTT..........................................................................................................................3011.001.00-------------------1.00--------------------------
.....................................................................................................................................................................................................................................AACATGATATTGGAAGCCC..191.000.00-------1.00--------------------------------------
..................................................................................................................................ATATAATTTTGTGCAGTACCAAT.................................................................................................2311.001.00---1.00------------------------------------------
........................................................................................AAATTTAACTAATACTTGTACA............................................................................................................................................221.000.001.00---------------------------------------------
...........................................................................................................................................................................................................TGGGCTCAAAGAATTTATTCATCTC......................2511.001.00----------1.00-----------------------------------
.................................................................................................................................TATATAATTTTGTGCAGTACCAACG................................................................................................251.000.00---1.00------------------------------------------
....................................................................................................................................................................................CAGGTTTGTTGATCTTTTAGTTATG.............................................2511.001.00----------------------------1.00-----------------
.........................................................................................AATTTAACTAATACTTGAACA............................................................................................................................................2111.001.001.00---------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACAG...........................................................................................................................................2311.0016.001.00---------------------------------------------
..........................................................................................................AACATTTTGTATATATCTCT............................................................................................................................201.000.00--------------------------------------------1.00-
.................................................................TTTGAAACAGAAGCCTTG.......................................................................................................................................................................1811.001.00-----------------------1.00----------------------
.....................................................AAATGTAGCTTTTTTGAAACAGAA.............................................................................................................................................................................2411.001.00--------------1.00-------------------------------
.........................................................................................AATTTAACTAATACTTGAACATTT.........................................................................................................................................2411.001.001.00---------------------------------------------
.................................................................................................................................................................................AACCAGGTTTGTTGATCTTTTAGT.................................................2411.001.00------------------------------------1.00---------
......................................................................................................................................................................................................................AATTTATTCATCTCTAACG.................191.000.00---1.00------------------------------------------
.................................................................................................TAATACTTGAACATTTTG.......................................................................................................................................1811.001.001.00---------------------------------------------
........................................................................................AAATTTAACTAATACTTGTAC.............................................................................................................................................211.000.001.00---------------------------------------------
........................................................................................AAATTTAACTAATACTTGAACATTTTA.......................................................................................................................................2711.0015.00---1.00------------------------------------------
...........................................................................AAGCCTTGAATTGAAATTT............................................................................................................................................................1911.001.00-------------------------1.00--------------------
........................................................................................AAATTTAACTAATACTTGAACATTTCTTT.....................................................................................................................................2911.009.00---1.00------------------------------------------
...........................................................................................TTTAACTAATACTTGAACTTTG.........................................................................................................................................2211.001.00-----1.00----------------------------------------
..............................................................................................AACTAATACTTGAACA............................................................................................................................................1640.250.25---0.25------------------------------------------
......................................................................................................................................AATTTTGTGCAGTACC....................................................................................................1640.250.25---------------------------------------------0.25
................................................................................................CTAATACTTGAACATT..........................................................................................................................................1650.200.20-----0.20----------------------------------------
.........................................................................................AATTTAACTAATACTT.................................................................................................................................................1690.110.11-0.11--------------------------------------------

Antisense strand
GTTGGAAAGATTATTTGAAATGACTAATTTGTGCTATCTTTATGAAATATGTTAAATGTAGCTTTTTTGAAACAGAAGCCTTGAATTGAAATTTAACTAATACTTGAACATTTTGTATATATTTCTTTGTATATAATTTTGTGCAGTACCAATGACAAAAATATGGTGTCATAATAAAACCAGGTTTGTTGATCTTTTAGTTATGGGCTCAAAGAATTTATTCATCTCTAACATGATATTGGAAAATAAT
......................................................................................(((((.(((((....(((((.(((..(((((((((......)))))))))...))).........((((((.........))))))........)))))..)))))..)))))...................................................
...................................................................................84..................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR343335SRR343334SRR189784DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR189783SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
......................................................................................................................................................................................GGTTTGTTGATCTTTGATG................................................. 191.000.00---1.00------------------------------------------
......................................................................................................................................................................................GGTTTGTTGATCTTTATCG................................................. 191.000.00---1.00------------------------------------------
......................................................................................................................................................AATGACAAAAATATGGTAAT................................................................................ 201.000.00------------------------1.00---------------------
.................................................................................................................TGTATATATTTCTTTGTAGTTT................................................................................................................... 221.000.001.00---------------------------------------------