ID: uc010rqm.1_intron_0_0_chr11_70266617_f.3p
GENE: (1)
chr11:70268415-70268664+


(1)
AGO2.ip 		(2)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
CGTTAGAAACACACAGCAGTGTTCAGGTGTGGGCAGGTAGACACACCTGGGGTGGTCCCGCAGACTGCATGGAGATGGCAGTGGCTCTCCGTGGCATCACTGCTGCATGACAGTGTGACTTTCATGTGGATCTGTGTTGCTGCAACGGAAGTCTTTGGCTGGTAGAATTTCCACATGGATTTTTTTTTTCTCTTAAAAAGCAAGAGAACAAACTGCGATTGAGCCTCTTTTTAGCGCTCAGTAGAGCAGG
.........................................................................................................................................................(((((..((.((((..(((....)))..))))...))..))))).....................................................
......................................................................................................................................................151..............................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................TTTTTTTTTCTCTTAACG....................................................188.000.00---2.001.00---2.00-2.00-----1.00----------------
...................................................................................................................................................................................TTTTTTTTTTCTCTTAACG....................................................195.000.00---1.002.00---1.00-------1.00----------------
............................................................................................................................................TGCAACGGAAGTCTTTGGCTGGTAGAATTCTG..............................................................................322.000.00-----2.00---------------------------
.................................................................................................................................................................................GATTTTTTTTTTCTCTTAAAGAG..................................................232.000.00------2.00--------------------------
...........................................................................................................................................................TGGCTGGTAGAATTTATG.............................................................................182.000.00------------2.00--------------------
..............................................................................................................................................................CTGGTAGAATTTCCACATGG........................................................................2012.002.00-----------2.00---------------------
..................................................................................................................GTGACTTTCATGTGGATCTGTGTTGCTG............................................................................................................2812.002.002.00--------------------------------
.......................................................................GAGATGGCAGTGGCTCTCCGTGG............................................................................................................................................................2311.001.00-------------------------------1.00-
..............................................................................................................................................................................ATGGATTTTTTTTTTCTCCC........................................................201.000.00--1.00------------------------------
....................................................................................................................................................................................................AAAGCAAGAGAACAAACTGCGATTG.............................2511.001.00----------------------1.00----------
.....................................................................................................................ACTTTCATGTGGATCTGTGTTGCTGCAACG.......................................................................................................3011.001.001.00--------------------------------
.......................................................................GAGATGGCAGTGGCTCTCCGTGGCAT.........................................................................................................................................................2611.001.00-------1.00-------------------------
........................................................................................................................................TTGCTGCAACGGAAGTCTTTGGCT..........................................................................................2411.001.00-------------1.00-------------------
...............................................................................................................................................AACGGAAGTCTTTGGCTGGTA......................................................................................2111.001.00---------------1.00-----------------
...............................................................................................................................................................TGGTAGAATTTCCACATGGAT......................................................................2111.001.00--------------------1.00------------
........................................................................AGATGGCAGTGGCTCTCCGTGGGA..........................................................................................................................................................241.000.00---------1.00-----------------------
........................................................................................................................TTCATGTGGATCTGTGTTGCTGCAACG.......................................................................................................2711.001.00-1.00-------------------------------
.............................................................................................................................................GCAACGGAAGTCTTTGGCTGGTAGAA...................................................................................2611.001.00---------1.00-----------------------
............................................................CAGACTGCATGGAGATG.............................................................................................................................................................................1711.001.00---------------------------1.00-----
...............................................................................................................................................AACGGAAGTCTTTGGCTGGTAGAA...................................................................................2411.001.00-------------------------1.00-------
.....................................................................................................................ACTTTCATGTGGATCTGTG..................................................................................................................1911.001.00--------------------------1.00------
....................................................................................................................................................AAGTCTTTGGCTGGTAGAATTTCCACATGGA.......................................................................3111.001.00-----------------------------1.00---
...............GCAGTGTTCAGGTGTGGGCAGGTAGACACAC............................................................................................................................................................................................................3111.001.00-1.00-------------------------------
...................................................................................................................................................................................TTTTTTTTTTCTCTTAAAAAATG................................................231.000.00----------1.00----------------------
...........................................................................................................................................CTGCAACGGAAGTCTTTGGCTGGTAGAATTTC...............................................................................3211.001.00-----------------------1.00---------
................................................................................................................................................................GGTAGAATTTCCACATGGAT......................................................................2011.001.00--------------1.00------------------
...................................................................................................................................................................................TTTTTTTTTTCTCTTAACAGG..................................................211.000.00--1.00------------------------------
...............................................................................................................................................AACGGAAGTCTTTGGCTG.........................................................................................1811.001.00-------------------1.00-------------
..........................................................................................................................................................................................................AGAGAACAAACTGCGATTG.............................1911.001.00------------------1.00--------------
...................................................................................................................TGACTTTCATGTGGATCTGTGTTGC..............................................................................................................2511.001.00------------------------------1.00--
.............................TGGGCAGGTAGACACTTTG..........................................................................................................................................................................................................191.000.00-----------------1.00---------------
..............................................................................................................CAGTGTGACTTTCATGTGGATCTGTGTT................................................................................................................2811.001.00---------------1.00-----------------
.............................................................................................................................GTGGATCTGTGTTGCTGCAACG.......................................................................................................2211.001.001.00--------------------------------
............................................................................................................................................TGCAACGGAAGTCTTTGGCTGG........................................................................................2211.001.00------1.00--------------------------
...............................................TGGGGTGGTCCCGCAGACTGTATG...................................................................................................................................................................................241.000.00-1.00-------------------------------
..............................................................................................................................TGGATCTGTGTTGCTGCAACGGAAGGC.................................................................................................271.000.00-------1.00-------------------------
..........................................................................................................................................GCTGCAACGGAAGTCTT...............................................................................................1711.001.001.00--------------------------------
..............................................................................................................................TGGATCTGTGTTGCTGCAACGGAAGTCTTTGGC...........................................................................................3311.001.001.00--------------------------------
...........................................................................................................................................................................................................GAGAACAAACTGCGATTGA............................1911.001.00-------1.00-------------------------
..........................................ACACCTGGGGTGGTCCCGCAGACTGCACG...................................................................................................................................................................................291.000.00--1.00------------------------------
........................................................................................................................TTCATGTGGATCTGTGTTGC..............................................................................................................2011.001.00---------------------1.00-----------
....................................................................................................................................................................................TTTTTTTTTCTCTTAAAAAATG................................................221.000.00---1.00-----------------------------
................................................................................................................................................ACGGAAGTCTTTGGCTGGTAGAATCTCC..............................................................................281.000.00--1.00------------------------------
..........................................................................................................................................................TTGGCTGGTAGAATTTCCACATGGATTT....................................................................2811.001.00--------------1.00------------------
...................TGTTCAGGTGTGGGCAGGTAGACA...............................................................................................................................................................................................................2411.001.00-------------1.00-------------------
........................................................................AGATGGCAGTGGCTCTCCGTGGCA..........................................................................................................................................................2411.001.00---------1.00-----------------------
...........................................................................................................................................CTGCAACGGAAGTCTTTGGCTGGTAGA....................................................................................2711.001.00-----1.00---------------------------
........................................................................................................................TTCATGTGGATCTGTGTTGCTGC...........................................................................................................2311.001.00-1.00-------------------------------
............................................................................................................................................................................ACATGGATTTTTTTTGC.............................................................171.000.00----------------------------1.00----
.........................................................................................................................................................................................TTTTCTCTTAAAAAGCAA...............................................1840.250.25-----------------0.25---------------
................................................................CTGCATGGAGATGGC...........................................................................................................................................................................1580.120.12--------------------------------0.12

Antisense strand
CGTTAGAAACACACAGCAGTGTTCAGGTGTGGGCAGGTAGACACACCTGGGGTGGTCCCGCAGACTGCATGGAGATGGCAGTGGCTCTCCGTGGCATCACTGCTGCATGACAGTGTGACTTTCATGTGGATCTGTGTTGCTGCAACGGAAGTCTTTGGCTGGTAGAATTTCCACATGGATTTTTTTTTTCTCTTAAAAAGCAAGAGAACAAACTGCGATTGAGCCTCTTTTTAGCGCTCAGTAGAGCAGG
.........................................................................................................................................................(((((..((.((((..(((....)))..))))...))..))))).....................................................
......................................................................................................................................................151..............................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)