ID: uc010rph.1_intron_1_0_chr11_66293664_f
GENE: BBS1(2)
chr11:66293614-66294169+


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(1)
AGO3.ip
(1)
BRAIN
(4)
BREAST
(11)
CELL-LINE
(5)
CERVIX
(2)
HEART
(3)
HELA
(2)
LIVER
(2)
OTHER
(19)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CTTTGGCCGGTACGGGCGGGAGGACAACACCCTCATCATGACCACTCGAGGTGAGTGGAGTCAGACCTGGCAAGGGCTTTGAAGTCGGGAGTGAAGGGACAGGCCTGCTTCTGGGGAAAGAGGAGGAGGTGGAAATGAAGCATGGGTGGACCTGGGTGTGGAAAGTAAGGCCTACAGAAGTGTCCTTCTGGAGCTAGGCCTCCACTGGGACAGCCCAAGGGCTGGGTCCTGGGCTGGATTCGATCTTTCTAGTTCACCCAGCATCCCCAGTGCCTGCCACGATGCCAGGAACATCACAGTACTCCACAAATAACTGCTAAGTGGATTAATGAATTAATGATGAGAGACTATTAAGATGCACTTTGTTACTTCCAGAAACAGTCTCGTCTGGAAGACGGATGTGTACAGAAGCAACTCTATAGGAGGCAGATTGTTTGGGGAAGAAAGAATGGGAATGTGGGTAGAACTGGGGAGGACAAATCCATTTCCACTGTCCACTTCCCTAGGTGGTGGCCTGATCATCAAGATCCTGAAGCGTACAGCAGTGTTTGTAGAG
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((.((((..((...(((((((((....))).))))))))..))))))))).....................................................
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................443............................................................506................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040024(GSM532909)
G613N. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR037931(GSM510469)
293GFP. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAATGTGGGTAGAACTGG......................................................................................23121.0021.0010.001.00--2.00-3.00-----------1.00---------------1.00-1.001.00-----------1.00------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAATGTGGGTAGAACT........................................................................................2118.008.00-4.00---------1.00-------------1.00----1.00-----------------1.00-------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCACTTCCCTAGT.................................................216.000.00-----1.00--1.002.00-1.00----------------------------------1.00---------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCACTTCCCTAGA.................................................212.000.00-----1.00---------1.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAATGTGGGTAGAACTG.......................................................................................2212.002.00-----------------------1.00-----------1.00--------------------
............................................................................................................................................CATGGGTGGACCTGGGTGTGGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--------------------------------------1.00-----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTACAGCAGTGTTTG.....2011.001.00---------------------------------1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGAGGCAGATTGTTTAGTT....................................................................................................................221.000.00------------1.00-------------------------------------------
..................................ATCATGACCACTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00------------------------1.00-------------------------------
.....................GGACAACACCCTCATCACGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------------1.00--------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGAATGTGGGTAGAACTGGT.....................................................................................2411.0021.00-1.00------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCAGATTGTTTAGAT....................................................................................................................191.000.00----------------1.00---------------------------------------
........................................................................................................................................................................................................................AAGGGCTGGGTCCTGTGGG.................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------1.00------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTGTTTGGGGAAGAAA..............................................................................................................2011.001.00-------------1.00------------------------------------------
.................................................................................AAGTCGGGAGTGAAGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCACTGTCCACTTCCCTAGT.................................................241.000.00--------------------------------1.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAAGATCCTGAAGCGTACA...............2211.001.00-----------------1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGGAATGTGGGTAGA...........................................................................................1911.001.00----------1.00---------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAATGTGGGTAGAACTGT......................................................................................221.000.00--------------------------------------------1.00-----------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTGGCCTGATCATCAAGATCCTGAAGC....................3211.001.00----1.00---------------------------------------------------
.....................................................................................................................................................................................................................CCCAAGGGCTGGGTCGGCT....................................................................................................................................................................................................................................................................................................................................191.000.00---------------------1.00----------------------------------
.......................................................................................................................................................................................................................................................................TCCCCAGTGCCTGCCACGATG................................................................................................................................................................................................................................................................................2111.001.00-------1.00------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGGTAGAACTCTG.....................................................................................191.000.00-----------------------------------------------1.00--------
.......................................................................................................................................TGAAGCATGGGTGGACATAG.................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCACTTCCCTAGATT...............................................231.000.00--------------1.00-----------------------------------------
...........................................................................................................CTTCTGGGGAAAGAGGAGGAGGTGGAAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-------1.00------------------------------------------------
............................................................................................................TTCTGGGGAAAGAGGAGGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--1.00-----------------------------------------------------
....................................................................................................AGGCCTGCTTCTGGGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGGAATGTGGGTAG............................................................................................1811.001.00----------1.00---------------------------------------------
.........GTACGGGCGGGAGGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00---------------------------------------------1.00----------
...........................................................................................................................................GCATGGGTGGACCTG..................................................................................................................................................................................................................................................................................................................................................................................................................1530.670.67---------------------------------------------------0.67----
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGGAAGAAAGAA...........................................................................................................1760.170.17------------------------------------------------------0.17-
......................................................................................GGGAGTGAAGGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1660.170.17-------------------------------------------------------0.17
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTGGGGAGGACA..............................................................................1660.170.17-----------------------------------------------------0.17--
......................................................GTGGAGTCAGACCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1670.140.14-------0.14------------------------------------------------

Antisense strand
CTTTGGCCGGTACGGGCGGGAGGACAACACCCTCATCATGACCACTCGAGGTGAGTGGAGTCAGACCTGGCAAGGGCTTTGAAGTCGGGAGTGAAGGGACAGGCCTGCTTCTGGGGAAAGAGGAGGAGGTGGAAATGAAGCATGGGTGGACCTGGGTGTGGAAAGTAAGGCCTACAGAAGTGTCCTTCTGGAGCTAGGCCTCCACTGGGACAGCCCAAGGGCTGGGTCCTGGGCTGGATTCGATCTTTCTAGTTCACCCAGCATCCCCAGTGCCTGCCACGATGCCAGGAACATCACAGTACTCCACAAATAACTGCTAAGTGGATTAATGAATTAATGATGAGAGACTATTAAGATGCACTTTGTTACTTCCAGAAACAGTCTCGTCTGGAAGACGGATGTGTACAGAAGCAACTCTATAGGAGGCAGATTGTTTGGGGAAGAAAGAATGGGAATGTGGGTAGAACTGGGGAGGACAAATCCATTTCCACTGTCCACTTCCCTAGGTGGTGGCCTGATCATCAAGATCCTGAAGCGTACAGCAGTGTTTGTAGAG
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((.((((..((...(((((((((....))).))))))))..))))))))).....................................................
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................443............................................................506................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040024(GSM532909)
G613N. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR037931(GSM510469)
293GFP. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
............................................................................................................................................................................................................................................................................................................................CTAAGTGGATTAATGAATC............................................................................................................................................................................................................................. 195.000.00---5.00----------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGACGGATGTGAG....................................................................................................................................................... 174.000.00--3.00-------------------------1.00---------------------------
..................................................................................................................................................................................................................................TCCTGGGCTGGATTCGGA........................................................................................................................................................................................................................................................................................................................ 182.000.00--------------------------1.00--1.00--------------------------
...TCCTCCCGCCCGTACCGGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2111.001.00---------------------------------------1.00----------------
...........................................................................................................................................................................................................................................................................................TATTTGTGGAGTACTGTGATGTTCCTGGC.................................................................................................................................................................................................................................................... 2911.001.00--------------------------------------------------1.00-----
.................................................................................................................................................................................................................................................................................................................................................................................CAGACGAGACTGTTTCTGGAA...................................................................................................................................................................... 2111.001.00---------------------------1.00----------------------------
...................................................................................................................................................GGACCTGGGTGTGGATCT....................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------1.00-------------------------------------------
.................................................................................................................................................................................................................................................................................................AACATCACAGTACTCCATGA....................................................................................................................................................................................................................................................... 201.000.00-------------------------------------------1.00------------
....................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGACGGATGTGAGA...................................................................................................................................................... 181.000.00--------------------1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGAATGGACG..................................................................................................... 181.000.00--1.00-----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGCCTGATCATG................................. 161.000.00-------------------1.00------------------------------------
.................................................................................................................................................................................................................................................................................................AACATCACAGTACTCCATTT....................................................................................................................................................................................................................................................... 201.000.00------------------------------------------1.00-------------
..................................................................................................................................................................................................................................................GGATGCTGGGTGAACTAGAAAGAT.................................................................................................................................................................................................................................................................................................. 2411.001.00--------1.00-----------------------------------------------
..............................................................................................CAGAAGCAGGCCTGTCCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1930.330.33----------------------------------------------------0.33---