ID: uc010rnd.1_intron_1_0_chr11_63991683_r
GENE: (6)
chr11:63991633-63991806-


(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(2)
HEART 		(4)
HELA 		(3)
LIVER 		(1)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
GTCCCATTGTGAAATAGCTGTGTTCATCGATGGACCCCTGGCTCTGGCAGGTGAGTCTGGACAAAGCAGGAGCTGCCCTTGCCTTCGGGGAGGGCATGAGTCACATCTCTGGCTCTGTCAGCAGATGGAATACCCTTCTTCCGCTCTGCCAATGGGGTGATTCTGACTCCAGGG
..................................................((((.((.......(((....)))((((((.((....))))))))..)).)))).((((((((...))))).))).................................................
..................................................51........................................................................125...............................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
..........................................................GGACAAAGCAGGAGCTAACT................................................................................................2030.000.0025.00-----2.00--1.00--------------1.00--1.00--------------
.........................................................TGGACAAAGCAGGAGCTATC.................................................................................................2013.000.00-13.00----------------------------------------
.........................................................TGGACAAAGCAGGAGATC...................................................................................................1810.000.00-10.00----------------------------------------
..................................................GTGAGTCTGGACAAAGCAGGAGCTGCCCTTGCCTTCGGGGAGGGCATGAGTCACATCTCTGGCTCTGTCAGCAG..................................................7419.009.00--8.00--------1.00------------------------------
..................................................GTGAGTCTGGACAAAGC...........................................................................................................1715.005.00---5.00--------------------------------------
.............................ATGGACCCCTGGCTCTGGCAGATGG........................................................................................................................2513.001.00----3.00-------------------------------------
..........................................................GGACAAAGCAGGAGCTATC.................................................................................................193.000.00-3.00----------------------------------------
..........................................................GGACAAAGCAGGAGCTAAC.................................................................................................192.000.002.00-----------------------------------------
.........................................................TGGACAAAGCAGGAGCTAACT................................................................................................212.000.00-----1.00---1.00--------------------------------
......................TTCATCGATGGACCCCTGGCTCTGT...............................................................................................................................252.000.00--------2.00---------------------------------
............................................................................................................CTGGCTCTGTCAGCAGATGGA.............................................2111.001.00-------------1.00----------------------------
.....................................................................................CGGGGAGGGCATGAGTC........................................................................1711.001.00--------------------1.00---------------------
.........................................................TGGACAAAGCAGGAGCTGCCCTTGCCTTCGGGG....................................................................................3311.001.00----------1.00-------------------------------
.......................TCATCGATGGACCCCTGGCTCTGGCAG............................................................................................................................2711.001.00---------------------------------1.00--------
...................................................................................................................................................GCCAATGGGGTGATTCTGACT......2111.001.00-------------------1.00----------------------
...................................................TGAGTCTGGACAAAGCAGGAGC.....................................................................................................2211.001.00-------------------------1.00----------------
........................CATCGATGGACCCCTGGCTCTGGCAGG...........................................................................................................................2711.001.00------------------1.00-----------------------
..............................TGGACCCCTGGCTCTGGCAGATG.........................................................................................................................231.000.00-------1.00----------------------------------
....................................................................................................................................................CCAATGGGGTGATTCTGAA.......191.000.00-----------------------1.00------------------
..................................................GTGAGTCTGGACAAAGCAGGAGCTGCC.................................................................................................2711.001.00---------------------1.00--------------------
.........................................................TGGACAAAGCAGGAGCTGCCCTTGC............................................................................................2511.001.00----------------------1.00-------------------
.........................................................TGGACAAAGCAGGAGCTA...................................................................................................181.000.00-----1.00------------------------------------
......TTGTGAAATAGCTGTGTTC.....................................................................................................................................................1911.001.00--------------------------------1.00---------
...................GTGTTCATCGATGGACCCCTGGCTCTGG...............................................................................................................................2811.001.00------------1.00-----------------------------
...............................................CAGGTGAGTCTGGACAAAGCAGGAGCTGA..................................................................................................291.000.00---------------1.00--------------------------
........................CATCGATGGACCCCTGGCTCTGGCAGA...........................................................................................................................271.000.00-------1.00----------------------------------
................GCTGTGTTCATCGATGG.............................................................................................................................................1711.001.00-----------------------------------1.00------
.............................ATGGACCCCTGGCTCTGGCAG............................................................................................................................2111.001.00----------------------------1.00-------------
.......................................................................................................................................TTCTTCCGCTCTGCC........................1511.001.00--------------------------1.00---------------
........................................................................................................................................................TGGGGTGATTCTGACTCCAGG.2111.001.00-----------------1.00------------------------
..................................................GTGAGTCTGGACAAAGCAGGA.......................................................................................................2111.001.00----------------1.00-------------------------
..............................TGGACCCCTGGCTCTGGCAGATGG........................................................................................................................241.000.00------------------------------1.00-----------
......................................................GTCTGGACAAAGCAGGAGCTGCC.................................................................................................2311.001.00-----------------------------1.00------------
............AATAGCTGTGTTCATCGATGGAC...........................................................................................................................................2311.001.00-------------------------------1.00----------
..........................................................................................................................................................GGGTGATTCTGACTCCAGG.1911.001.00----------------------------------1.00-------
........................................................................................................ATCTCTGGCTCTGTCAGC....................................................1820.500.50--------------------------------------0.50---
.................................ACCCCTGGCTCTGGCAG............................................................................................................................1730.330.33-----0.33------------------------------------
......................................................................................................ACATCTCTGGCTCTGTCA......................................................1830.330.33----------------------------------------0.33-
........................................................CTGGACAAAGCAGGAG......................................................................................................1650.200.20-----------------------------------------0.20
............................................................................................................................................................GTGATTCTGACTCCAG..1690.110.11-----------------------------------------0.11

Antisense strand
GTCCCATTGTGAAATAGCTGTGTTCATCGATGGACCCCTGGCTCTGGCAGGTGAGTCTGGACAAAGCAGGAGCTGCCCTTGCCTTCGGGGAGGGCATGAGTCACATCTCTGGCTCTGTCAGCAGATGGAATACCCTTCTTCCGCTCTGCCAATGGGGTGATTCTGACTCCAGGG
..................................................((((.((.......(((....)))((((((.((....))))))))..)).)))).((((((((...))))).))).................................................
..................................................51........................................................................125...............................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
........................................................................................................................................CAGAATCACCCCATTGGCAGAGCGGAAGA......... 2911.001.00------------------------------------1.00-----
........................................................................................................................................TCTTCCGCTCTGCCACCCT................... 191.000.00--------------1.00---------------------------
..........................................................................CTCCCCGAAGGCAAGGGC.................................................................................. 1820.500.50---------------------------------------0.50--
..............................................................................................AGAGATGTGACTCATG................................................................ 1620.500.50-------------------------------------0.50----