ID: uc010rlf.1_intron_24_0_chr11_61100481_r.3p
GENE: DDB1(2)
chr11:61100431-61100680-


(1)
AGO2.ip 		(13)
B-CELL 		(5)
BRAIN 		(15)
BREAST 		(36)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(21)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTCCGGGGGCGGGGCCTCCTTCGGTTGGCGGCCTCGGGCTTCGGGAGTCCTCCAAGAGGCCAGGTGAGGCCGTCCCGTGATGCCCCGCGCCCCGGCCGCTCTGGCCTGCAACGTGTCTCTGGGGCGGAGGCAGCGGCAGTGGAGTTCGCTGCGCGCTGTTGGGGGCCACCTGTCTTTTCGCTTGTGTCCCTCTTTCTAGTGTCGCGCTCGAGTCCCGACGGGCCGCTCCAAGCCTCGACATGTCGTACA
..............................................................................................................................(((.((((((((((((.....)))))).)))))).(((((.(((..((......))..))).)))))..)))....................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037941(GSM510479)
293DroshaTN. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR038859(GSM458542)
MM386. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
................................................................................................................................AGGCAGCGGCAGTGGAGTT.......................................................................................................1916.006.00-------1.00---2.00---------1.00-------1.00--------------------------------1.00----------------------------------------------------
............................................................................................................................................TGGAGTTCGCTGCGCGCTGTTGG.......................................................................................2315.005.00---------4.00-----1.00---------------------------------------------------------------------------------------------------
.....................................................................................................................................................CTGCGCGCTGTTGGGGGC...................................................................................1815.005.00---2.002.00-----------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................GAGTTCGCTGCGCGCTGTTGGGGGCCA.................................................................................2714.004.00-------------------------2.00----------2.00------------------------------------------------------------------------------
................................................................................................................................................GTTCGCTGCGCGCTGTTGGG......................................................................................2014.004.004.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGT........................................................................................................1814.004.00-------------2.00------2.00----------------------------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGTTC......................................................................................................2014.004.00-------1.00---1.00-------1.00----------------------------------------------------------------------------------1.00------------
.....................................................................................................................................................CTGCGCGCTGTTGGG......................................................................................1514.004.00----2.00-------1.00----------------------------------1.00-------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGTTCG.....................................................................................................2114.004.00-------1.00---------1.00--------2.00----------------------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGGGTT.......................................................................................................194.000.00--------1.00--------1.00-----------------1.00--------------------1.00----------------------------------------------------------
.................................................................................................................GTGTCTCTGGGGCGGAGGCA.....................................................................................................................2024.004.00---4.00---------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................GGCCGCTCCAAGCCTCGAC..........1913.003.00------2.00-----------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................GAGTTCGCTGCGCGCTGTTGGGGGCC..................................................................................2613.003.00--3.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................AGTGGAGTTCGCTGCGCGCTG...........................................................................................2113.003.00--------------------------------2.00---------------------------------------------------------------------------1.00------
............................................................................................................................................TGGAGTTCGCTGCGCGCTG...........................................................................................1913.003.00----------------------3.00--------------------------------------------------------------------------------------------
............................................................................................................................................TGGAGTTCGCTGCGCGC.............................................................................................1713.003.00--1.00------------1.001.00--------------------------------------------------------------------------------------------------
.................................................................................................................................GGCAGCGGCAGTGGAGTTCG.....................................................................................................2012.002.00-------------------1.00--------------------------------------------------------------------------1.00--------------------
.........................................................................................................................................................GCGCTGTTGGGGGCCACCTGTCTTTT.......................................................................2612.002.00--------------------------------------------------------------------1.00------------1.00---------------------------------
...............................................................................................................ACGTGTCTCTGGGGCGGAGGCAGCGGCAG..............................................................................................................2912.002.00-2.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................AACGTGTCTCTGGGGCGGA.........................................................................................................................1912.002.00--------1.00-------------------------------1.00--------------------------------------------------------------------------
....................................................................................................................................................GCTGCGCGCTGTTGGG......................................................................................1612.002.00-----------------------------------------------------------------------------------------1.00---------------1.00---------
......................................................AAGAGGCCAGGTGAGGCCGTCCCGTGATGCCCCG..................................................................................................................................................................3412.002.00---------------------------------------------------------1.00---------------------------------------------------1.00-----
............................................................................................................................................TGGAGTTCGCTGCGCGCTGT..........................................................................................2012.002.00--2.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGCCACCTGTCTTTTCGC....................................................................1912.002.002.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................CGCGCTGTTGGGGGCCACCTGTCTT.........................................................................2512.002.00------------------------------------------------------------------1.00---1.00--------------------------------------------
.............................................................................................................................................GGAGTTCGCTGCGCGCTGTTGG.......................................................................................2212.002.00--------------2.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................GGAGTTCGCTGCGCGCTGTT.........................................................................................2012.002.00-------------------------------------------------------1.00------------------------1.00----------------------------------
.............................................................................................................................................................................TCTTTTCGCTTGTGTCC............................................................1712.002.00-------------------------------------1.00------------------------------------------------------------1.00----------------
..................................................................................................................................GCAGCGGCAGTGGAGTTCG.....................................................................................................1912.002.00-----------------------------------------------------------------------------------------------------1.00--------1.00----
..............................................................................................................AACGTGTCTCTGGGGCGGAGG.......................................................................................................................2112.002.00-2.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CGCTGCGCGCTGTTGGGGGC...................................................................................2012.002.001.00--------------------------------------1.00---------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGTTCGC....................................................................................................2212.002.00---------------------------2.00---------------------------------------------------------------------------------------
........................................................................................................................................................CGCGCTGTTGGGGGCCAC................................................................................1812.002.00----------------------------------------------------------------1.00----1.00---------------------------------------------
..........................................................................................................................................................................CTGTCTTTTCGCTTGTGTCCCTCTTTCTAGTG................................................3212.002.00----------2.00--------------------------------------------------------------------------------------------------------
.........................................................................................................................................................GCGCTGTTGGGGGCCACCTGTC...........................................................................2211.001.00-----------------------------------------------------1.00-------------------------------------------------------------
...............................................................................................................................GAGGCAGCGGCAGTGGGGTT.......................................................................................................201.000.00-----------------------------------------------------------------------------------------------1.00-------------------
.....................................................................................................................................................CTGCGCGCTGTTGGGGGCCACC...............................................................................2211.001.00---------------------------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................................................................................................GACGGGCCGCTCCAAGCCTCG............2111.001.00------1.00------------------------------------------------------------------------------------------------------------
............................................................................................................................................TGGAGTTCGCTGCGCG..............................................................................................1611.001.00----------------------------------------------1.00--------------------------------------------------------------------
...............................................................................................................................GAGGCAGCGGCAGTGGAGTTCG.....................................................................................................2211.001.00-------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGTTCGCT...................................................................................................2311.001.00---------------------------------------------------------------------------------------------1.00---------------------
..........................................................................................CCCCGGCCGCTCTGGCCTGCAACG........................................................................................................................................2411.001.00------1.00------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CGCGCTCGAGTCCCGACG.............................1811.001.00------------------------------------------------1.00------------------------------------------------------------------
.............................CGGCCTCGGGCTTCGGGAG..........................................................................................................................................................................................................1911.001.00---------------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................AACGTGTCTCTGGGGCGG..........................................................................................................................1811.001.00----------------------------------------1.00--------------------------------------------------------------------------
........................................................................................................................................................CGCGCTGTTGGGGGCCACCTG.............................................................................2111.001.00------------------------------------------------------------1.00------------------------------------------------------
........................................................................................................................................................CGCGCTGTTGGGGGCCACCT..............................................................................2011.001.00-------------------------------------------------------------1.00-----------------------------------------------------
...................................................................................................................................................CGCTGCGCGCTGTTGGGGGCC..................................................................................2111.001.00------------------------------------------------------------------------1.00------------------------------------------
............................................................................................................................GCGGAGGCAGCGGCAGTGGAG.........................................................................................................2111.001.00-1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................TGGCCTGCAACGTGTCTCTGG...............................................................................................................................2111.001.00----------------------------1.00--------------------------------------------------------------------------------------
...............................................................................................................ACGTGTCTCTGGGGCGGAGG.......................................................................................................................2011.001.00---------------------------------------------1.00---------------------------------------------------------------------
.................................................................................................................GTGTCTCTGGGGCGGAGGCAGCG..................................................................................................................2311.001.00-------------------------------------------------------------------------------------------1.00-----------------------
......................................................................................................................................................................................................................CCCGACGGGCCGCTCCAA..................1811.001.00---------------------------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GACGGGCCGCTCCAAGC................1711.001.00------------1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GTCGCGCTCGAGTCCCGACGG............................2111.001.00-------------------------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................TCTTTTCGCTTGTGTCCCTCTTT......................................................2311.001.00-------------------------------------------------------------------------1.00-----------------------------------------
...........................................................................................CCCGGCCGCTCTGGCCTGCAAAG........................................................................................................................................231.000.00-----------------------------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................................................................................GACGGGCCGCTCCAA..................1511.001.00------1.00------------------------------------------------------------------------------------------------------------
..........................................................................................................CTGCAACGTGTCTCTGGGGCGGAGGCAGCG..................................................................................................................3011.001.00--------------------------------------------------------------------------------------1.00----------------------------
................................................................................................................CGTGTCTCTGGGGCGGAGGC......................................................................................................................2011.001.001.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................GTGTCTCTGGGGCGGAGGCAGCGG.................................................................................................................2411.001.00-----------------------------1.00-------------------------------------------------------------------------------------
.............................................................................................................................CGGAGGCAGCGGCAGTGGGG.........................................................................................................201.000.00--------------1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................CTGGGGCGGAGGCAGCGGCAGTGG...........................................................................................................2411.001.00-1.00-----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................CGCTGTTGGGGGCCACCTGTCTTTT.......................................................................2511.001.00-------------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................TCGCTGCGCGCTGTTGGG......................................................................................1811.001.00-----1.00-------------------------------------------------------------------------------------------------------------
......................................................................................................TGGCCTGCAACGTGTCTCTGGGGCGGA.........................................................................................................................2711.001.00----------1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................GCAGCGGCAGTGGAGTTTGCT...................................................................................................211.000.00--------------------------------------------1.00----------------------------------------------------------------------
......................................................................................................................TCTGGGGCGGAGGCAGCGG.................................................................................................................1911.001.00----------------------------------1.00--------------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGGGT........................................................................................................181.000.00-----------------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TAGTGTCGCGCTCGAGTCCCGA...............................2211.001.00------------------------------------------1.00------------------------------------------------------------------------
.............................................................................................................CAACGTGTCTCTGGGGCGGA.........................................................................................................................2011.001.00----------------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................GCTGCGCGCTGTTGGGGGCCAC................................................................................2211.001.00-----------------------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................CAGCGGCAGTGGAGTTCGCTGC.................................................................................................2211.001.00--------------------------------------------------------------------------------------------------------1.00----------
........................................................................................................................................................CGCGCTGTTGGGGGCCACC...............................................................................1911.001.00-----1.00-------------------------------------------------------------------------------------------------------------
............................................................................................................................................TGGAGTTCGCTGCGC...............................................................................................1521.001.00------------------------0.50---------------------0.50--------------------------------------------------------------------
.............................................................................................................................CGGAGGCAGCGGCAGTGGAG.........................................................................................................2011.001.00------------------------------1.00------------------------------------------------------------------------------------
..................................................................................................................................................TCGCTGCGCGCTGTTGGGGG....................................................................................2011.001.001.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................................CTCTGGGGCGGAGGCAG....................................................................................................................1711.001.00-----------------------1.00-------------------------------------------------------------------------------------------
...............................................................................................GCCGCTCTGGCCTGCAACGTGTCT...................................................................................................................................2411.001.00----------------------------------------------------------------------------------1.00--------------------------------
....................................................................................................................................................GCTGCGCGCTGTTGGGGGCCA.................................................................................2111.001.00-----1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................AACGTGTCTCTGGGGCGGAGGCAGCGGCAGTGGA..........................................................................................................3411.001.00---------------------------------------------------------------1.00---------------------------------------------------
....................................................................................................................TCTCTGGGGCGGAGGCAG....................................................................................................................1811.001.00---------------------------------------1.00---------------------------------------------------------------------------
..............GCCTCCTTCGGTTGGCAG..........................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------1.00---
......................................................................................................................TCTGGGGCGGAGGCAGCG..................................................................................................................1811.001.00---------------------------------1.00---------------------------------------------------------------------------------
...................................................................................................................GTCTCTGGGGCGGAGGCAGC...................................................................................................................2011.001.00------------------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTGTCGCGCTCGAGTCCCGACGGG...........................2411.001.001.00------------------------------------------------------------------------------------------------------------------
....CGGGGGCGGGGCCTCTAG....................................................................................................................................................................................................................................181.000.00---------------------------------------------------1.00---------------------------------------------------------------
...............................................................................................GCCGCTCTGGCCTGCAACGTG......................................................................................................................................2111.001.00------------------------------------------------------------------------------------1.00------------------------------
......................................................................................................................TCTGGGGCGGAGGCAGC...................................................................................................................1711.001.00-1.00-----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................CGCTGTTGGGGGCCACCTG.............................................................................1911.001.00-----------------------------------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................AGTCCCGACGGGCCGCTCCAA..................2111.001.00------------------------------------------------------1.00------------------------------------------------------------
..........................................................................................................CTGCAACGTGTCTCTGGGGCGG..........................................................................................................................2211.001.00--------------------------------------1.00----------------------------------------------------------------------------
...............................................................................................................................................AGTTCGCTGCGCGCTGTTGGG......................................................................................2111.001.00-------------------------------------------------------------------------------------------------------1.00-----------
......................................................................................................................................................................................................................................AAGCCTCGACATGTCG....1611.001.00------------1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................ACGGGCCGCTCCAAGCCTCG............2011.001.00-----------------------------------------------------------------------------1.00-------------------------------------
.......................................................................................................................CTGGGGCGGAGGCAGCGGCAG..............................................................................................................2111.001.00-1.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................AACGTGTCTCTGGGGCGGAGGCAG....................................................................................................................2411.001.00-------------------------------------------------------------------------------------------------1.00-----------------
............................................................................................................................................................CTGTTGGGGGCCACCTGT............................................................................1811.001.00-------------------------------------------------1.00-----------------------------------------------------------------
..........................................................................................................CTGCAACGTGTCTCTGGGGAGG..........................................................................................................................221.000.00--------------------------------------1.00----------------------------------------------------------------------------
................................................................................................................CGTGTCTCTGGGGCGGAGGCAGC...................................................................................................................2311.001.00------------------------------------------------------------------------------------------------1.00------------------
.....................................................................................................................................GCGGCAGTGGAGTTCGCTGC.................................................................................................2011.001.00--------------------------------------------------1.00----------------------------------------------------------------
.................................................................................................................................................TTCGCTGCGCGCTGTTGGGGGCC..................................................................................2311.001.00----------------1.00--------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CCCGACGGGCCGCTCCAAGCCTCGAC..........2611.001.00----------------------------------------------------1.00--------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGGT.......................................................................................................191.000.00-----------------------------------1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................CCGACGGGCCGCTCCAA..................1711.001.00------------------------------------------1.00------------------------------------------------------------------------
................................................................................................................................AGGCAGCGGCAGTGGAGG........................................................................................................181.000.00-----1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................GCTGTTGGGGGCCACCTG.............................................................................1811.001.00--------------------1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................CTGCGCGCTGTTGGGG.....................................................................................1611.001.00----1.00--------------------------------------------------------------------------------------------------------------
.............................................................................................CGGCCGCTCTGGCCTGCAACGTGT.....................................................................................................................................2411.001.00-----------------------------------------------------------1.00-------------------------------------------------------
..............................................................................................................................GGAGGCAGCGGCAGTGGAGTTC......................................................................................................2211.001.00-------------------1.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................GTCTTTTCGCTTGTGT..............................................................1611.001.00--1.00----------------------------------------------------------------------------------------------------------------
..................................................................................................................TGTCTCTGGGGCGGAGGCAGCGGCA...............................................................................................................2511.001.00---------------------------------------------------------------------------1.00---------------------------------------
............................................................................................................................................................................................................GCGCTCGAGTCCCGACGGGCCGCTCCAAGCC...............3111.001.00-------------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CTCCAAGCCTCGACATG.......1711.001.00-----------------------------------------------------------------------------------------------------------1.00-------
...........................................................................................................................GGCGGAGGCAGCGGCAGGGGA..........................................................................................................211.000.00----------------------------------------------------------------------------------------------------------1.00--------
...................................................................................................................................CAGCGGCAGTGGAGTTC......................................................................................................1711.001.00-------------1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CTTTTCGCTTGTGTCCC...........................................................1711.001.00-----------------------------------------------------------------------------------1.00-------------------------------
........................................................................................................................TGGGGCGGAGGCAGCGGCTGA.............................................................................................................211.000.00-------------------------------------------------------------------1.00-----------------------------------------------
..............................................................................................................AACGTGTCTCTGGGGCGGAG........................................................................................................................2011.001.00------------------------------------------------------------------------------1.00------------------------------------
...........................................................................................................................................................GCTGTTGGGGGCCACCTGTCCT.........................................................................221.000.00-----------------------------------------1.00-------------------------------------------------------------------------
...................................................................................CCCCGCGCCCCGGCCGGCGC...................................................................................................................................................201.000.00-------------------------------------------------------------------------------------1.00-----------------------------
...............................................................................................GCCGCTCTGGCCTGCAACG........................................................................................................................................1911.001.00----------------------------------------------------------------------------1.00--------------------------------------
.........................................................................................................................................................GCGCTGTTGGGGGCCACCTGTCTTTTC......................................................................2711.001.00--------------------------------------------1.00----------------------------------------------------------------------
...............................................................................................................ACGTGTCTCTGGGGCGGAG........................................................................................................................1911.001.00-------------------------------------1.00-----------------------------------------------------------------------------
............................................................................................................................................TGGAGTTCGCTGCGCGCTGTTGGAA.....................................................................................2511.005.00--------------------------------------------------------------------------------------------1.00----------------------
......................................................................................................................................................TGCGCGCTGTTGGGGGCCAC................................................................................2011.001.00---------------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................CGGAGGCAGCGGCAGTGGAGT........................................................................................................2111.001.00---------------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGTGTCGCGCTCGAGTCCCG................................2011.001.00----------------------------------------------------------------------------------------------------1.00--------------
.................................................................................................................................................TTCGCTGCGCGCTGTTGGGG.....................................................................................2011.001.001.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................................CTGGGGCGGAGGCAGCGGC................................................................................................................1920.500.50----------------------------------------------------------------------------------------------------------------0.50--
..............................................................................................................AACGTGTCTCTGGGGC............................................................................................................................1620.500.50---------------------------------------------0.50---------------------------------------------------------------------
............................................................................................................................GCGGAGGCAGCGGCAGTGG...........................................................................................................1920.500.50-0.50-----------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GCTCCAAGCCTCGAC..........1520.500.50------------------------0.50------------------------------------------------------------------------------------------
.........................................................................................................................GGGGCGGAGGCAGCGGC................................................................................................................1730.330.33-----------------------------------------------------------------------------------------------------------------0.33-
.........................................................................................................................GGGGCGGAGGCAGCGGCTGGA............................................................................................................2130.330.33------------------------------------------------------------------------------------------------------------------0.33
.............................................................................................................CAACGTGTCTCTGGG..............................................................................................................................1530.330.33------------------------------------------------0.33------------------------------------------------------------------
......................................................................................................................................................TGCGCGCTGTTGGGG.....................................................................................1530.330.33-----------------------------------------------0.33-------------------------------------------------------------------

Antisense strand
CCTCCGGGGGCGGGGCCTCCTTCGGTTGGCGGCCTCGGGCTTCGGGAGTCCTCCAAGAGGCCAGGTGAGGCCGTCCCGTGATGCCCCGCGCCCCGGCCGCTCTGGCCTGCAACGTGTCTCTGGGGCGGAGGCAGCGGCAGTGGAGTTCGCTGCGCGCTGTTGGGGGCCACCTGTCTTTTCGCTTGTGTCCCTCTTTCTAGTGTCGCGCTCGAGTCCCGACGGGCCGCTCCAAGCCTCGACATGTCGTACA
..............................................................................................................................(((.((((((((((((.....)))))).)))))).(((((.(((..((......))..))).)))))..)))....................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037941(GSM510479)
293DroshaTN. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR038859(GSM458542)
MM386. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
...........................................................................................................................................................................................................................CGGGCCGCTCCAAGCGTA............. 181.000.00--------1.00----------------------------------------------------------------------------------------------------------
..............CCGCCAACCGAAGGAGGC.......................................................................................................................................................................................................................... 1811.001.00---------------------------------------------------------------------------------------------------1.00---------------
.............................................................................................................................................................TGTTGGGGGCCACCTGTC........................................................................... 181.000.00-----1.00-------------------------------------------------------------------------------------------------------------
...............................................................................................................................................AGTTCGCTGCGCGCTAAA......................................................................................... 181.000.00--------------------------------------------------------------------------1.00----------------------------------------
.CTCCGGGGGCGGGGCTA........................................................................................................................................................................................................................................ 171.000.00-----------------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................TTTCGCTTGTGTCCCTAT........................................................ 181.000.00--------1.00----------------------------------------------------------------------------------------------------------
.............................CGGCCTCGGGCTTCGAGG........................................................................................................................................................................................................... 181.000.00------------------------------------------------------------------------------------------1.00------------------------
....................................................................................CCCGCGCCCCGGCCGTGGT................................................................................................................................................... 191.000.00----------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................CAGGCCAGAGCGGCC............................................................................................................................................. 1570.430.43------------------------0.29------------------------0.14-----------------------------------------------------------------
.GGCCCCGCCCCCGGAG......................................................................................................................................................................................................................................... 1680.380.38-----------------------0.38-------------------------------------------------------------------------------------------