| (8) CELL-LINE | (1) CERVIX | (3) HEART | (3) LIVER | (5) OTHER | (1) RRP40.ip | (2) SKIN | (1) XRN.ip |
| CATCCACAGCACCGTCGACTCTTGCATCAGAGACAGCAACAGAATAGAAGGTAAGTACTCATCCGATTCCTTTATGGCTTCTTAATTCAGCTTTTAATTTTAACAGTGTAACAACATGCTATTTAGTTGTTTTGTTTTTTTTAGTAAGTTTACTTCATATCCATAAACCTGGATGTATTATCAACATGTAAATATGAAAAGCATAATATTGAGTAAAGAAGCAAGGAACAGAATTATATGTACCATTTAT .......................................................................................................................((((((..((((...........((((....))))..(((((((......)))))))......))))..))))))........................................................ .......................................................................................................................120.............................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR189787 | SRR040036(GSM532921) G243N. (cervix) | SRR189785 | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189786 | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330886(SRX091724) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................TATCAACATGTAAATATTG..................................................... | 19 | 7.00 | 0.00 | - | 6.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTTCC........................................................................................................ | 22 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................GTTTTGTTTTTTTTACTCT....................................................................................................... | 19 | 4.00 | 0.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTCCC........................................................................................................ | 22 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTCC......................................................................................................... | 21 | 3.00 | 0.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATTA..................................................... | 19 | 3.00 | 0.00 | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTCCT........................................................................................................ | 22 | 3.00 | 0.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................TGCTATTTAGTTGTTTTGTTTTTTCTAG.......................................................................................................... | 28 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................GTTTTGTTTTTTTTACTC........................................................................................................ | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATCTTA................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATAG....................................................... | 17 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................CATCAGAGACAGCAACAGAATAGAAG........................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................TTTTGTTTTTTTTAGTAGAGC.................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................GTTTTGTTTTTTTTACTCC....................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................AGCAACAGAATAGAAGGC...................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATGGACG.................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................AGCAAGGAACAGAATTATAA........... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTTCT........................................................................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........CCGTCGACTCTTGCATCAGAGACAGC..................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TATCAACATGTAAATAATG..................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTC.......................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTACT.......................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATTTT.................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................TAGTTGTTTTGTTTTTTCGC........................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATCA..................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATACGT..................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................TTAGTTGTTTTGTTTTTCC............................................................................................................. | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATCG..................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATCTCT..................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATCAACATGTAAATATTTG.................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGTTGTTTTGTTTTTTTTTTC......................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................AGAGACAGCAACAGAATAGAAGTCA..................................................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........CACCGTCGACTCTTGCATCAG............................................................................................................................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...CCACAGCACCGTCGACTCTTGCATCAGAGACAGCAA................................................................................................................................................................................................................... | 36 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .ATCCACAGCACCGTCGACTCTCGT................................................................................................................................................................................................................................. | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................TATGGCTTCTTAATTCTATG.............................................................................................................................................................. | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............GTCGACTCTTGCATCAGAGACAGCAACAG................................................................................................................................................................................................................ | 29 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ..............TCGACTCTTGCATCAGA........................................................................................................................................................................................................................... | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ..........................TCAGAGACAGCAACAGAATA............................................................................................................................................................................................................ | 20 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TTGCATCAGAGACAGCAAC.................................................................................................................................................................................................................. | 19 | 3 | 0.33 | 0.33 | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GCATCAGAGACAGCAACAGAATA............................................................................................................................................................................................................ | 23 | 3 | 0.33 | 0.33 | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................CATCAGAGACAGCAACAGAATAGA.......................................................................................................................................................................................................... | 24 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| CATCCACAGCACCGTCGACTCTTGCATCAGAGACAGCAACAGAATAGAAGGTAAGTACTCATCCGATTCCTTTATGGCTTCTTAATTCAGCTTTTAATTTTAACAGTGTAACAACATGCTATTTAGTTGTTTTGTTTTTTTTAGTAAGTTTACTTCATATCCATAAACCTGGATGTATTATCAACATGTAAATATGAAAAGCATAATATTGAGTAAAGAAGCAAGGAACAGAATTATATGTACCATTTAT .......................................................................................................................((((((..((((...........((((....))))..(((((((......)))))))......))))..))))))........................................................ .......................................................................................................................120.............................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR189787 | SRR040036(GSM532921) G243N. (cervix) | SRR189785 | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189786 | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330886(SRX091724) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................AATCGGATGAGTACTTACCTTC...................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................ACATGTAAATATGAACTA................................................. | 18 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................CAGAATAGAAGGTAACTAA................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .............................................................................................TTAATTTTAACAGTGTAGTT......................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................TCCATAAACCTGGATCAAT........................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................ATAAACCTGGATGTATATT..................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |