ID: uc010rha.1_intron_5_0_chr11_47189803_r.3p
GENE: (6)
chr11:47189753-47190002-


(3)
AGO2.ip 		(2)
B-CELL 		(5)
BRAIN 		(7)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(13)
SKIN 		(1)
XRN.ip

Sense strand
GAATTCTGAGGTGTGCTTCACAGGTCACCACACACAGCTAGCCTTCTGTTGGGGTCTGGCCCAGCCCTGTGCTTGGGTAAGGACAGAAGGCTCTGGGTGACGCTCCGTGAAGGAGAACCCAGTTGCTGGGCATTGTCTCTTGTGCGGTGATGCTGATGCCTATCCTTTGGTCTCATGCCTGGCTCTGCTTTGCTGCGCAGCTCTGTCTCCCACTCCGTGCTGTCTGAGATGCAGGTGATTGAGCAGGAAA
............................................................................................................................................((((((((((.((.((.(((........(((.....))).))))).)).))))))))))...................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189787SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
.........................................................................................................................................TCTTGTGCGGTGATGCTGATGCC..........................................................................................2318.008.00-2.002.00----2.00------1.00-------1.00---------------------------
............................................................................................................................................TGTGCGGTGATGCTGATGCCTAT.......................................................................................2314.004.00-2.00---------------1.00-------------1.00------------------
..............................................................................................................................................................................................................................TCTGAGATGCAGGTGATTGAGCAGT...254.000.00--4.00-----------------------------------------------
.............................................................................TAAGGACAGAAGGCTCTGGGTGACGCTCCGCG.............................................................................................................................................323.000.003.00-------------------------------------------------
.......................................................................................................................................................................................................................CGTGCTGTCTGAGATGC..................1712.002.00---------------------------1.00-1.00--------------------
...............................................................................AGGACAGAAGGCTCTGGGTGACGCTCCGCG.............................................................................................................................................302.000.002.00-------------------------------------------------
...................................................................................................................................................................................TGGCTCTGCTTTGCTGCGCAGT.................................................2212.001.00-----------1.00--------------1.00-----------------------
...............................................................................AGGACAGAAGGCTCTGGGTGACGCCCCG...............................................................................................................................................2812.001.002.00-------------------------------------------------
..........................................................................GGGTAAGGACAGAAGGCT..............................................................................................................................................................1812.002.00---1.00-------------------------------------1.00--------
...................................................................................................................................................................................TGGCTCTGCTTTGCTGCGCAGTGA...............................................2412.001.00-2.00------------------------------------------------
...............................................................................AGGACAGAAGGCTCTGGGTGACGC...................................................................................................................................................2411.001.00-----------1.00--------------------------------------
.........................................................................................................................................TCTTGTGCGGTGATGCTGATGCCT.........................................................................................2411.001.00-----------------------------------1.00--------------
......................................................................................................................................................................................................................CCGTGCTGTCTGAGATGCAGGTGATTGAGC......3011.001.00-----1.00--------------------------------------------
.......................................................................................................................................TCTCTTGTGCGGTGATGCTGATT............................................................................................231.000.00--------------------------------1.00-----------------
.......................................................................................................................................................................................................................CGTGCTGTCTGAGATGCAGGTGATTG.........2611.001.00------1.00-------------------------------------------
.....................................................................................GAAGGCTCTGGGTGACGCTCCGTG.............................................................................................................................................2411.001.00------------------------------1.00-------------------
......................................................................................................................................................................................................................CCGTGCTGTCTGAGATGCAGGTGATTG.........2711.001.00--------------------------------------1.00-----------
......................................................................................................................................................................................................................CCGTGCTGTCTGAGATGCAGGTGATTGAGCAGG...3311.001.00----1.00---------------------------------------------
..........................................................................................................GTGAAGGAGAACCCAGTTGCTGGGCATT....................................................................................................................2811.001.00------1.00-------------------------------------------
............................................................................GTAAGGACAGAAGGCTCTGGGTGACG....................................................................................................................................................2611.001.00--------------------------------------------1.00-----
....................................................................GTGCTTGGGTAAGGACAGAAGGC...............................................................................................................................................................2311.001.00---1.00----------------------------------------------
............................................................................................................................................TGTGCGGTGATGCTGATGCCTATT......................................................................................2411.004.00-------------------------1.00------------------------
.......................................................................................................................................................................................................................CGTGCTGTCTGAGATGCAGGTGATTGAGCAGGA..3311.001.00----------1.00---------------------------------------
..............................................................................................................................TGGGCATTGTCTCTTGTGCGGTGATG..................................................................................................2611.001.00------------------------1.00-------------------------
......................................................................GCTTGGGTAAGGACAGAAGGCT..............................................................................................................................................................2211.001.00----------------1.00---------------------------------
............................................................................GTAAGGACAGAAGGCTCTGGGT........................................................................................................................................................2211.001.00-----1.00--------------------------------------------
..........................................................................GGGTAAGGACAGAAGGCTCTGGGTGACG....................................................................................................................................................2811.001.00---1.00----------------------------------------------
..........................................................................................................................................................................................................................GCTGTCTGAGATGCAGGTGAT...........2111.001.00-------------1.00------------------------------------
...................................................................................................................................................................................TGGCTCTGCTTTGCTGCGCAG..................................................2111.001.00---------------------------------------1.00----------
......................................................................................................................................................................................................................CCGTGCTGTCTGAGATGCAGGTGATT..........2611.001.00----------------------------------------1.00---------
..............................................................................................................................................................................................................................TCTGAGATGCAGGTGATTGAGCAGGA..2611.001.00------------------1.00-------------------------------
............................................................................GTAAGGACAGAAGGCTCTGGGTGACGCT..................................................................................................................................................2811.001.00----1.00---------------------------------------------
....................................................................................................................................................................................................................................ATGCAGGTGATTGAGCAGGAAA2211.001.00---------------------------------1.00----------------
..............................................................................AAGGACAGAAGGCTCTG...........................................................................................................................................................1711.001.00---------------1.00----------------------------------
...................................................................................................................................................................................TGGCTCTGCTTTGCTGCGCAGA.................................................2211.001.00----------------------------1.00---------------------
......................................................................................................................................................................................CTCTGCTTTGCTGCGCAGCTC...............................................2111.001.00--------1.00-----------------------------------------
....................................................................................AGAAGGCTCTGGGTGACG....................................................................................................................................................1811.001.00---1.00----------------------------------------------
...........................................................................................................................................TTGTGCGGTGATGCTGTAA............................................................................................191.000.00------------------------------------------1.00-------
..............................................................................AAGGACAGAAGGCTCTGGGTG.......................................................................................................................................................2111.001.00---------------------1.00----------------------------
...........................................................................................................................................TTGTGCGGTGATGCTGATGCCCAT.......................................................................................241.000.00--------1.00-----------------------------------------
...........................................................................................................................................TTGTGCGGTGATGCTGA..............................................................................................1711.001.00----------1.00---------------------------------------
..............GCTTCACAGGTCACCTGC..........................................................................................................................................................................................................................181.000.00-------------------1.00------------------------------
.......................................................................................................................................................................................................................CGTGCTGTCTGAGATGCAGGTGATTGAGCAG....3111.001.00----1.00---------------------------------------------
............................................................................................................................................TGTGCGGTGATGCTGATGTC..........................................................................................201.000.00----------------------------------1.00---------------
...........................................................................................................................................TTGTGCGGTGATGCTGATG............................................................................................1911.001.00--------------------1.00-----------------------------
...................................................................TGTGCTTGGGTAAGGACAGAAGGC...............................................................................................................................................................2411.001.00---1.00----------------------------------------------
...........................................................................GGTAAGGACAGAAGGCTCTGGGTGA......................................................................................................................................................2511.001.00----1.00---------------------------------------------
...............................................................................AGGACAGAAGGCTCTGG..........................................................................................................................................................1730.670.67------------------------------------------------0.330.33
.............................................................................TAAGGACAGAAGGCTCT............................................................................................................................................................1720.500.50---------------------------------------------0.50----
........................................................................................................................................................................................................................................AGGTGATTGAGCAGGAAA1820.500.50-----------------------------------------------0.50--
...............................................................................AGGACAGAAGGCTCTGGAA........................................................................................................................................................1930.330.67----------------------------------------------0.33---
..................................................................................................................GAACCCAGTTGCTGG.........................................................................................................................1550.200.20---------------------------------------------0.20----

Antisense strand
GAATTCTGAGGTGTGCTTCACAGGTCACCACACACAGCTAGCCTTCTGTTGGGGTCTGGCCCAGCCCTGTGCTTGGGTAAGGACAGAAGGCTCTGGGTGACGCTCCGTGAAGGAGAACCCAGTTGCTGGGCATTGTCTCTTGTGCGGTGATGCTGATGCCTATCCTTTGGTCTCATGCCTGGCTCTGCTTTGCTGCGCAGCTCTGTCTCCCACTCCGTGCTGTCTGAGATGCAGGTGATTGAGCAGGAAA
............................................................................................................................................((((((((((.((.((.(((........(((.....))).))))).)).))))))))))...................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189787SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
.............................................................................................................AAGGAGAACCCAGTTTCG........................................................................................................................... 181.000.00---------1.00----------------------------------------
........................................................TGGCCCAGCCCTGTGCTCTGT............................................................................................................................................................................. 211.000.00------------------------------------1.00-------------
.........................................................................................................................................................................................................AGACAGCACGGAGTGGGAGACAGA......................... 2411.001.00-----------------------1.00--------------------------
..........................................ACAGGGCTGGGCCAGACCCCAACAGAAG.................................................................................................................................................................................... 2811.001.00-------------------------------------1.00------------
..............TGTGTGGTGACCTGTGAAGC........................................................................................................................................................................................................................ 2011.001.00-------------------------------------------1.00------
........................................................................................................................................................................................................................................AGGTGATTGAGCAGGACCCG 201.000.00---------1.00----------------------------------------
.......................................................................................................................................................................................................GCTCTGTCTCCCACTACC................................. 181.000.00------------1.00-------------------------------------
.......................................................................................................................................................................................................GCTCTGTCTCCCACTACCG................................ 191.000.00------------1.00-------------------------------------
....................................................................................................................................................................................................TGGGAGACAGAGCTGC...................................... 1660.170.17----------------------------------------------0.17---