ID: uc010rgq.1_intron_8_0_chr11_46393721_f
GENE: (9)
chr11:46393671-46394027+


(2)
AGO2.ip
(3)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(6)
HEART
(1)
HELA
(3)
LIVER
(2)
OTHER
(37)
SKIN
(1)
XRN.ip

Sense strand
TCATGAAGCCCCTGCTGGTGTTTGTGAACCCCAAGAGTGGGGGCAACCAGGTGAACGCGGCCTTGCCTCTCAGCTAAGGGCTCGGGCGGGGGTTGGGGTCCAGCCCGTCTGCCAGCAGCTGTTCCCAGAGCCCGTTTCTGGCTTCTACCCCAATCCCTCTTTCCCAGGGATCCTGAGAAAATCCTGTCCTTTCTCCACCCCTCACCCCTTATTGGCCCTGGTTCCCACAGTCACACCCCTCTCCCTCTGCTGCTCCCACTTCGTCCCACCACTGCCTGACTGTCTCTTGGCTCCCCATCCCATCCAGGGTGCAAAGATCATCCAGTCTTTCCTCTGGTATCTCAATCCCCGACAAGT
....................................................................................................................................................................(((((.....((((((.........))))))...........((.....))))))).........................................................................................................................................
................................................................................................................................................................161........................................................220.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189784SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.....................................................................................................................................................................AGGGATCCTGAGAAACGG..............................................................................................................................................................................1827.000.00-6.00--2.001.002.00-3.00----1.00--1.00--1.00----1.001.001.001.00------1.00--1.00-----1.00--1.001.00------1.00-------------
.....................................................................................................................................................................AGGGATCCTGAGAAACGGC.............................................................................................................................................................................1925.000.00---6.00---2.00-2.001.00-2.00-2.00-1.00---1.00-1.001.00----1.001.00--1.001.00--------1.00-------------1.00-----------
......................................................................................................................................................................................................CCCTCACCCCTTATTGGC.............................................................................................................................................1812.002.00-----2.00--------------------------------------------------------------
....................................................................................................................................................................................................................................................................TCGTCCCACCACTGCCACCA.............................................................................202.000.00---------------1.00---------------------------------1.00------------------
.....................................................................................................................................................................AGGGATCCTGAGAAACT...............................................................................................................................................................................171.000.00-----------1.00--------------------------------------------------------
.....................................................................................................................................................................AGGGATCCTGAGAAAGGC..............................................................................................................................................................................181.000.00------1.00-------------------------------------------------------------
............................................................CCTTGCCTCTCAGCTCCA.......................................................................................................................................................................................................................................................................................181.000.00------------------------------------------------1.00-------------------
.....................................................................................................................................................................................................................................................................CGTCCCACCACTGCCACCA.............................................................................191.000.00-----------------------------------------1.00--------------------------
.......................................................................................................................................................................................CTGTCCTTTCTCCACCCCCCCG........................................................................................................................................................221.000.00-------------------------------------------------------1.00------------
.......................................................................AGCTAAGGGCTCGGGCCTGG..........................................................................................................................................................................................................................................................................201.000.00-------1.00------------------------------------------------------------
.....................................................................................................................................................................AGGGATCCTGAGAAATGGC.............................................................................................................................................................................191.000.00-------------1.00------------------------------------------------------
..............................................................................................................................................................................................................................TCCCACAGTCACACCCCTCT...................................................................................................................2011.001.00-------------------------------1.00------------------------------------
.....................................................................................................................................................................AGGGATCCTGAGAAACTG..............................................................................................................................................................................181.000.00----------1.00---------------------------------------------------------
........................................................................GCTAAGGGCTCGGGCGGTC..........................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................CGTCCCACCACTGCCTGACTGTCTCTTGG...................................................................2911.001.00-----------1.00--------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CAAAGATCATCCAGTCTTTCCTCTG.....................2520.500.50-----------------0.50--------------------------------------------------
.............................CCCAAGAGTGGGGGCAACCAG...................................................................................................................................................................................................................................................................................................................2120.500.50----------------------------------------------------------0.50---------
..................TGTTTGTGAACCCCAAGAGTGGG............................................................................................................................................................................................................................................................................................................................2320.500.50------------------------------------------------------------0.50-------
.................................................................................................................................................................................................................................................................................................................................................TATCTCAATCCCCGACA...1720.500.50-----------------------------------------------------------0.50--------
......................................................................................CGGGGGTTGGGGTCCTTC.............................................................................................................................................................................................................................................................1830.330.33-------------------------------------------------------------0.33------
...................................................................................................................................................................................................................................................................................................................................AGTCTTTCCTCTGGTA..................1630.330.33------------------0.33-------------------------------------------------
......................................................................................CGGGGGTTGGGGTCC................................................................................................................................................................................................................................................................1530.330.33--------------------------------------------------------------0.33-----
.....................................................................................................................................................................................................................................................................................................................................TCTTTCCTCTGGTATCT...............1740.250.25---------------------------------------------------------------0.25----
.......................GTGAACCCCAAGAGT...............................................................................................................................................................................................................................................................................................................................1570.140.14-------------------------------------------------------------------0.14

Antisense strand
TCATGAAGCCCCTGCTGGTGTTTGTGAACCCCAAGAGTGGGGGCAACCAGGTGAACGCGGCCTTGCCTCTCAGCTAAGGGCTCGGGCGGGGGTTGGGGTCCAGCCCGTCTGCCAGCAGCTGTTCCCAGAGCCCGTTTCTGGCTTCTACCCCAATCCCTCTTTCCCAGGGATCCTGAGAAAATCCTGTCCTTTCTCCACCCCTCACCCCTTATTGGCCCTGGTTCCCACAGTCACACCCCTCTCCCTCTGCTGCTCCCACTTCGTCCCACCACTGCCTGACTGTCTCTTGGCTCCCCATCCCATCCAGGGTGCAAAGATCATCCAGTCTTTCCTCTGGTATCTCAATCCCCGACAAGT
....................................................................................................................................................................(((((.....((((((.........))))))...........((.....))))))).........................................................................................................................................
................................................................................................................................................................161........................................................220.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189784SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..............................................................................................................................................................................................TTCTCCACCCCTCACTC...................................................................................................................................................... 176.000.00--6.00-----------------------------------------------------------------
.......................................................................................................................................................................................................................................CACACCCCTCTCCCTTGGT........................................................................................................... 193.000.003.00-------------------------------------------------------------------
.......................................................................................................................................................................................................................................CACACCCCTCTCCCTTAGT........................................................................................................... 192.000.002.00-------------------------------------------------------------------
......................................................................................................................................................................................................................................TCACACCCCTCTCCCTCAATT.......................................................................................................... 211.000.001.00-------------------------------------------------------------------
.......................................................................................................................................................................GGATCCTGAGAAAATAATG........................................................................................................................................................................... 191.000.00----------------------------------------1.00---------------------------
.......................................................................................................................TGTTCCCAGAGCCCGCTG............................................................................................................................................................................................................................ 181.000.00--------------------------------------1.00-----------------------------
............................................................................................................................................................................................................................GTTCCCACAGTCACACTTTG..................................................................................................................... 201.000.00----------------------------------------------------1.00---------------
.......................................................................................................................................................................................................................................CACACCCCTCTCCCTGAGG........................................................................................................... 191.000.00---------------------------------------------1.00----------------------
...................................................................................................................GAAACGGGCTCTGGGAACAGCTG........................................................................................................................................................................................................................... 2311.001.00-----------------------------------1.00--------------------------------
.............................................................................GGGCTCGGGCGGGGGCCA...................................................................................................................................................................................................................................................................... 181.000.00------------------------------------1.00-------------------------------
.............................................................................................................................................CTTCTACCCCAATCCTCTG..................................................................................................................................................................................................... 191.000.00---------------1.00----------------------------------------------------
.......................................................................................................................................................................................................................................CACACCCCTCTCCCTTAG............................................................................................................ 181.000.00----1.00---------------------------------------------------------------
......................................................................................................................................................................................................................................................................GTCCCACCACTGCCTGAAGAC.......................................................................... 211.000.00---------------------------------------------------1.00----------------
.................................................................................................................................GCCCGTTTCTGGCTTCTCCC................................................................................................................................................................................................................ 201.000.00---------------------1.00----------------------------------------------
..........................................................................................................................................................................................................................................ACCCCTCTCCCTCTGCTTTCG...................................................................................................... 211.000.00---------------------------------------1.00----------------------------
........................................................................................................................................................................................................................................ACACCCCTCTCCCTCTATAG......................................................................................................... 201.000.00-----------------1.00--------------------------------------------------
........................................................................................................................................................................................................................................ACACCCCTCTCCCTCTGTGTT........................................................................................................ 211.000.00------------------------------1.00-------------------------------------
...........................................................................................................................................................................................................................GGTTCCCACAGTCACACCCCCTG................................................................................................................... 231.000.00------------------1.00-------------------------------------------------
.......................................................................................................................................................................................................................................CACACCCCTCTCCCTTAGA........................................................................................................... 191.000.001.00-------------------------------------------------------------------
..............................................................................................................................................................................................................................................CTCTCCCTCTGCTGCCTCA.................................................................................................... 191.000.00---------------------------------------------------------1.00----------
.......................................................................................................................................................................................................................................CACACCCCTCTCCCTCTGGG.......................................................................................................... 201.000.001.00-------------------------------------------------------------------
.............................................................................................................................................CTTCTACCCCAATCCCTCTTGCA................................................................................................................................................................................................. 231.000.00-----------------------------------------------------1.00--------------
...................................................................................................................................................................................................CACCCCTCACCCCTTAAT................................................................................................................................................ 181.000.00--------------------------------------------1.00-----------------------
.......................................................................................................CCCGTCTGCCAGCAGT.............................................................................................................................................................................................................................................. 160.170.00----------------------------------------------------------------0.17---
.......................................................................................................CTGCTGGCAGACGGG............................................................................................................................................................................................................................................... 1560.170.17------------------------------------------------------------------0.17-
.......................................................................................................CCCGTCTGCCAGCAGTCA............................................................................................................................................................................................................................................ 180.170.00-----------------------------------------------------------------0.17--