ID: uc010rdm.1_intron_24_0_chr11_20099182_f
GENE: (25)
chr11:20099132-20099588+


(1)
AGO2.ip
(3)
BRAIN
(6)
BREAST
(11)
CELL-LINE
(4)
CERVIX
(2)
FIBROBLAST
(2)
HEART
(1)
KIDNEY
(3)
LIVER
(1)
OTHER
(5)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
GTAACATGACAATCAGGCTCCAGAGTCTGACCATGACAGCTGAGCAGAAGGTAAGGCAGAAAGGATACTTTAACCCTCCCTACTTGGAGTTAACAACAAACTTGAAAATACTATTCTTTCATTTCAGATCATTGTGTGGATGTTAATGTATTTCTTGAACTGTTAAAGTTTAATTGTAAGGAGTCCAATCTGTTGAGTGAAAATATGACAGATTGATAATGGCATCAATGATAGATCTTGTAGTTATAATCCTACTTTTATGTGTTTGTTCATGCCTGTTGATCCATCTGAAAGGTTTTGTTGAGCTACTTCATTCCCGCTCCTCCTGTGTTGAAGCCAAGTTGTACTTCAGTTGAACTCTGTACAGAATGATTTTAGGCTGACCAATAATTTTTTCTGTTCCCTAGGACTCAGAACTGAATGAGTTAAGAAAAACCATTGAGCTGCTAAAGAAACA
...............................................................(((.((......((((.(((.....(((((((.......(((((.........))))).((((.((....)).))))))))))).......(((((((.....)))))))..))).))))..((((((((((.((....)).)))))))))).....)).))).......................................................................................................................................................................................................................................
...........................................................60.....................................................................................................................................................................227....................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189782SRR189786SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040024(GSM532909)
G613N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040018(GSM532903)
G701N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191462(GSM715572)
1genomic small RNA (size selected RNA from to. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...........................................................................................................................................................................................................TATGACAGATTGATAACTGA..........................................................................................................................................................................................................................................2032.000.00-3.00--5.00----4.00-2.00---1.001.00--1.00----1.00-1.001.001.001.001.00-1.001.00-1.001.00-1.00--1.001.001.001.00--
...........................................................................................................................................................................................................TATGACAGATTGATAAC.............................................................................................................................................................................................................................................1712.000.00---5.00----3.00-2.00--1.00-----------1.00---------------------
...........................................................................................................................................................................................................TATGACAGATTGATAACT............................................................................................................................................................................................................................................188.000.00---2.00----1.00-2.00-1.001.00--------------------1.00------------
...........................................................................................................................................................................................................TATGACAGATTGATAACTG...........................................................................................................................................................................................................................................193.000.00-2.00--------------------1.00------------------------
.....................AGAGTCTGACCATGACAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-----1.00---------------------------------------1.00-
................................................................ATACTTTAACCCTCCCTAC......................................................................................................................................................................................................................................................................................................................................................................................1912.002.00-----2.00-----------------------------------------
........................................................................................................................................................................................................................TAATGGCATCAATGATAGATCTTGTAGT.....................................................................................................................................................................................................................2811.001.00-------------------------------1.00---------------
...........................................................................................................................................................................................................TATGACAGATTGATAACTAA..........................................................................................................................................................................................................................................201.000.00---------------------1.00-------------------------
................GCTCCAGAGTCTGACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TAGGCTGACCAATAATTTTTTCTG..........................................................2411.001.00------1.00----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................GTACTTCAGTTGAACTCTG...............................................................................................1911.001.00--------------1.00--------------------------------
................................ATGACAGCTGAGCAGAAGGATTC..................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00----------------------------------------1.00------
...........................................................................................................................................................................................................TATGACAGATTGATAATTGA..........................................................................................................................................................................................................................................201.000.00----------------------------------------------1.00
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCTGCTAAAGAAACA2011.001.00-----1.00-----------------------------------------
.........................TCTGACCATGACAGCTGAGCAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------1.00----------------------------------
......................GAGTCTGACCATGACAGCTGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------1.00----------------------------------------
..............AGGCTCCAGAGTCTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------1.00-----------------------
..............AGGCTCCAGAGTCTGACCATGACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------1.00----------------------------------------
................................ATGACAGCTGAGCAGAAGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--------------------1.00--------------------------
.................................................................................................................................................................................................................AGATTGATAATGGCAATA......................................................................................................................................................................................................................................181.000.00-----1.00-----------------------------------------
.............................ACCATGACAGCTGAGCAGAAGGATTC..................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00------1.00----------------------------------------
..............AGGCTCCAGAGTCTGACCATGACAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00------------------1.00----------------------------
................GCTCCAGAGTCTGACGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------
.........................TCTGACCATGACAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50------0.50----------------------------------------

Antisense strand
GTAACATGACAATCAGGCTCCAGAGTCTGACCATGACAGCTGAGCAGAAGGTAAGGCAGAAAGGATACTTTAACCCTCCCTACTTGGAGTTAACAACAAACTTGAAAATACTATTCTTTCATTTCAGATCATTGTGTGGATGTTAATGTATTTCTTGAACTGTTAAAGTTTAATTGTAAGGAGTCCAATCTGTTGAGTGAAAATATGACAGATTGATAATGGCATCAATGATAGATCTTGTAGTTATAATCCTACTTTTATGTGTTTGTTCATGCCTGTTGATCCATCTGAAAGGTTTTGTTGAGCTACTTCATTCCCGCTCCTCCTGTGTTGAAGCCAAGTTGTACTTCAGTTGAACTCTGTACAGAATGATTTTAGGCTGACCAATAATTTTTTCTGTTCCCTAGGACTCAGAACTGAATGAGTTAAGAAAAACCATTGAGCTGCTAAAGAAACA
...............................................................(((.((......((((.(((.....(((((((.......(((((.........))))).((((.((....)).))))))))))).......(((((((.....)))))))..))).))))..((((((((((.((....)).)))))))))).....)).))).......................................................................................................................................................................................................................................
...........................................................60.....................................................................................................................................................................227....................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189782SRR189786SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040024(GSM532909)
G613N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040018(GSM532903)
G701N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191462(GSM715572)
1genomic small RNA (size selected RNA from to. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTAGT...... 197.000.004.00-3.00--------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTAG....... 183.000.00-------3.00---------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTAGTG..... 203.000.002.00-1.00--------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTGAGCTGCTACGT..... 192.000.002.00----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTAACA..... 202.000.001.00-1.00--------------------------------------------
............................................................................................................................................................................................................................................................................TTCATGCCTGTTGATTTG........................................................................................................................................................................... 181.000.00-1.00---------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTAGTGT.... 211.000.00--1.00--------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTGGG...... 191.000.001.00----------------------------------------------
.................................................................................................................................................................................................................................................AGTTATAATCCTACTTTTACTG.................................................................................................................................................................................................. 221.000.00-------------------------------------1.00---------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTACGG..... 201.000.00--1.00--------------------------------------------
...........ATCAGGCTCCAGAGTCCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------1.00-----------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTGAGCTGCTAAG...... 181.000.00-------1.00---------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCATTGAGCTGCTAGGG..... 201.000.00--1.00--------------------------------------------
.........................................................................................................AAATACTATTCTTTCAATA............................................................................................................................................................................................................................................................................................................................................. 191.000.00-1.00---------------------------------------------
........................................................................................................................................................................................................................................................................TTTGTTCATGCCTGTTAC............................................................................................................................................................................... 181.000.00---------------------------------------1.00-------