ID: uc010qvb.1_intron_8_0_chr10_135089092_r
GENE: ADAM8(1)
chr10:135089042-135089259-


(1)
AGO2.ip
(6)
BREAST
(5)
CELL-LINE
(11)
CERVIX
(1)
OTHER
(52)
SKIN

Sense strand
GTCTTTTAGGCACAGAACCCTCACTTGAGTCTTTGTCCCAGAGCTATCTGGTGAGTTCCCCAGGGGAGGGTCAAGCCCAGCAAGAGACAGAATCTGAGGGCCCAGGAGGCCTCTGGGAAGGAAACCTGCCCCCCGGCCCCTCATGCCTGCTGACCCTCCCTCCTGCAGCGATTGCCCCCAGCCGGCCCTGGGCCCTCATGGAGCAGTATGAGGTCGTG
..............................................................................................((((((.((.((.(((....((........)).))).)).)).))))))...........................................................................
......................................................................................87..........................................................147.....................................................................
SizePerfect hitTotal NormPerfect NormSRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
.............................................................................................................................CTGCCCCCCGGCCCCGCG...........................................................................18115.000.0011.004.006.006.004.003.002.004.002.003.004.004.002.003.003.003.001.003.002.002.00---2.002.001.002.002.001.002.002.00-1.001.002.001.001.001.001.001.00-1.00--1.00-1.001.00-1.00--1.00-1.001.001.001.00-1.001.001.001.001.001.00--1.001.00--1.00-1.00---
.............................................................................................................................CTGCCCCCCGGCCCCGCGT..........................................................................1926.000.002.002.00--1.002.003.00-2.001.00--1.00---2.00-1.001.002.00-----------1.00---------1.001.00---------1.00----------------1.00---1.00--
...............................................................................................................................GCCCCCCGGCCCCTCG...........................................................................163.000.00----------------------------1.00----------------------------------------1.00------1.00
...............................................................................................................................GCCCCCCGGCCCCTCGTC.........................................................................183.000.00-------------------------1.00-----1.00-------------1.00-------------------------------
...............................................................................................................................GCCCCCCGGCCCCTCGTCC........................................................................192.000.00----------------------1.00----------1.00-------------------------------------------
...........................................................................................ATCTGAGGGCCCAGGGTT.............................................................................................................182.000.00---------------------------------------------------1.00--------------1.00----------
................................................................................................................................CCCCCCGGCCCCTCATCA........................................................................181.000.00-----------------------------------------------------------------1.00-----------
..........................................................................................AATCTGAGGGCCCAGGGTTC............................................................................................................201.000.00------------------------------------------------1.00----------------------------
...........................................................................................ATCTGAGGGCCCAGGGTTT............................................................................................................191.000.00------------------------------------------------------------------------1.00----
........................................................................................................................................................................................................GAGCAGTATGAGGTCGTG1811.001.00---------------------1.00-------------------------------------------------------
...............................................................................................................................GCCCCCCGGCCCCTCTTC.........................................................................181.000.00----------------------1.00------------------------------------------------------
.............................................................................................................................CTGCCCCCCGGCCCCGTG...........................................................................181.000.00-------------------------------1.00---------------------------------------------
.............................................................................................................................CTGCCCCCCGGCCCCGTC...........................................................................181.000.00---------------------------------------------------------------------------1.00-
.............................................................................................................................CTGCCCCCCGGCCCCTCG...........................................................................181.000.00----------------------------------------------------------1.00------------------
............................................................................................................................CCTGCCCCCCGGCCCCGCGT..........................................................................201.000.00--------------------------------------------------1.00--------------------------
.............................................................................................................................CTGCCCCCCGGCCCCCGTC..........................................................................191.000.00-1.00---------------------------------------------------------------------------
.......................................AGAGCTATCTGGTGAG...................................................................................................................................................................1630.330.33-----------------------------------0.33-----------------------------------------

Antisense strand
GTCTTTTAGGCACAGAACCCTCACTTGAGTCTTTGTCCCAGAGCTATCTGGTGAGTTCCCCAGGGGAGGGTCAAGCCCAGCAAGAGACAGAATCTGAGGGCCCAGGAGGCCTCTGGGAAGGAAACCTGCCCCCCGGCCCCTCATGCCTGCTGACCCTCCCTCCTGCAGCGATTGCCCCCAGCCGGCCCTGGGCCCTCATGGAGCAGTATGAGGTCGTG
..............................................................................................((((((.((.((.(((....((........)).))).)).)).))))))...........................................................................
......................................................................................87..........................................................147.....................................................................
SizePerfect hitTotal NormPerfect NormSRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
.............................................................................................................................................................................GCCCCCAGCCGGCCCCGGG.......................... 191.000.00----------------------------------------1.00------------------------------------
....................................................................................................................................................................GCCGGCTGGGGGCAATCGCTGC................................ 2211.001.00---------------------1.00-------------------------------------------------------