ID: uc010qqp.1_intron_0_0_chr10_104849666_r.3p
GENE: (16)
chr10:104849616-104849865-


(1)
AGO1.ip OTHER.mut 		(8)
B-CELL 		(7)
BRAIN 		(11)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(11)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGGCACCATTTTGAGGGGCAGGGAGAGAGGAAGACAGGCAACTATAAGTAGTTCTATGAAGATAAGTCTATATTGACTTGTCCTGTGGTCCATTATAGATGTAATTGCATGGCCACCTAACAGAGGAGAGGGGTTAGGATTTGGGGAGTAGCTACTTTGCTCTGCCTGCTTTCTGAGCCTCTAGCTTTTTTCTGTCTAGATGCCTCATGAATCAACGGTGGAGCACACACACGTAGATATCAATGAGAT
.............................................................................................................................((((((((((((((.((..(((((((((...........)).)))))))..))..))))))))))))))........................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577742(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189784SRR189782SRR037936(GSM510474)
293cand1. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................................................AGGGGTTAGGATTTGGCG.......................................................................................................1819.000.001.00-3.00-1.001.001.002.001.001.00--1.00---1.00--1.001.00--1.001.00-------------------------1.00--------1.00-------
.................................................................................................................................AGGGGTTAGGATTTGGCGCT.....................................................................................................2019.000.007.00--------1.00-----1.001.00----1.00-1.00----------1.00------1.001.001.00-------------1.001.00---1.00----
.................................................................................................................................AGGGGTTAGGATTTGGCGC......................................................................................................1915.000.005.00------1.002.00----3.00------------------1.00--1.00-----------1.00----------------1.00--
..................................................................................................................................GGGGTTAGGATTTGGCG.......................................................................................................175.000.00---2.00-3.00-------------------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGC........................................................................................................174.000.00------2.00---1.00-----------------------------------1.00--------------------
..................................................................................................................................GGGGTTAGGATTTGGCGC......................................................................................................183.000.00---2.00------------------------------------1.00--------------------------
.................................................................................................................................AGGGGTTAGGATTTGGCGG......................................................................................................193.000.003.00------------------------------------------------------------------
................................................................................................................................................................................................................TGAATCAACGGTGGAGCACACACACG................2612.002.00-1.00---------------------------1.00-------------------------------------
..............AGGGGCAGGGAGAGAGGAAGACAGGC..................................................................................................................................................................................................................2612.002.00----------------------2.00--------------------------------------------
............TGAGGGGCAGGGAGAGAGGCT.........................................................................................................................................................................................................................212.000.00--------------1.00--1.00-------------------------------------------------
..................GCAGGGAGAGAGGAACAA......................................................................................................................................................................................................................182.000.00-------------------------2.00-----------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGCGTT.....................................................................................................202.000.00---------1.00-1.00-------------------------------------------------------
............TGAGGGGCAGGGAGAGAGGCGTT.......................................................................................................................................................................................................................232.000.00------------------------1.00------------------------------1.00-----------
............TGAGGGGCAGGGAGAGAGGCTTT.......................................................................................................................................................................................................................232.000.00------1.00-------------------------------------------------1.00----------
.................................................................................................................................AGGGGTTAGGATTTGGAG.......................................................................................................182.000.00----1.00----------------------------1.00---------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCGCT.....................................................................................................192.000.00------------1.00--------------1.00---------------------------------------
.............................................................................................................................................................................................................TCATGAATCAACGGTGGAGCAC.......................2212.002.00-------1.00-------1.00---------------------------------------------------
............TGAGGGGCAGGGAGAGAGGCTTA.......................................................................................................................................................................................................................232.000.00-----------1.00------------------------------------------------1.00------
.................................................................................................................................AGGGGTTAGGATTTGGCGGT.....................................................................................................202.000.001.00------1.00-----------------------------------------------------------
............TGAGGGGCAGGGAGAGAGGCTTG.......................................................................................................................................................................................................................232.000.00--2.00----------------------------------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCGT......................................................................................................181.000.00-------------------------------------------------------------1.00-----
.................................................................................................................................AGGGGTTAGGATTTGGGG.......................................................................................................1811.001.00-----1.00-------------------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGACG.......................................................................................................181.000.00--------1.00----------------------------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCACT.....................................................................................................191.000.00----1.00--------------------------------------------------------------
.................................................................................................................................................................................................................GAATCAACGGTGGAGCACA......................1911.001.00---------------------------------------------------1.00---------------
.............................................................................................................................................................................................................TCATGAATCAACGGTGGAGCA........................2111.001.00------------------------------1.00------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCGCC.....................................................................................................191.000.00------------------------------------------------------1.00------------
...................................................................................................................................................................................................................................ACACACGTAGATATCAATGAGAT2311.001.00---------------------------1.00---------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCGCA.....................................................................................................191.000.00------------1.00------------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGTGGT......................................................................................................191.000.001.00------------------------------------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCGTT.....................................................................................................191.000.00---1.00---------------------------------------------------------------
............TGAGGGGCAGGGAGAGAGACCA........................................................................................................................................................................................................................221.000.00----------------------------------------------------1.00--------------
............TGAGGGGCAGGGAGACTCT...........................................................................................................................................................................................................................191.000.00------------------1.00------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGCGAT.....................................................................................................201.000.00--------------------------1.00----------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGTGCT.....................................................................................................201.000.00--1.00----------------------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGTGT......................................................................................................191.000.00--------------------------1.00----------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGTGTT.....................................................................................................191.000.00----1.00--------------------------------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGGGATTCC..................................................................................................221.000.00---1.00---------------------------------------------------------------
................................................................................................................................................................................................................TGAATCAACGGTGGAGC.........................1711.001.00-1.00-----------------------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGGGTT.....................................................................................................2011.001.00--------------1.00----------------------------------------------------
...........................................................................................................................................................................................................CCTCATGAATCAACGGTGGGGC.........................221.000.00----------------------------1.00--------------------------------------
............TGAGGGGCAGGGAGAGAGGCTTC.......................................................................................................................................................................................................................231.000.00-------------------------------1.00-----------------------------------
............TGAGGGGCAGGGAGAGTGAC..........................................................................................................................................................................................................................201.000.00--------------1.00----------------------------------------------------
...........................................................................................................................................................................................................CCTCATGAATCAACGGTGGAGC.........................2211.001.00----------------------------1.00--------------------------------------
............TGAGGGGCAGGGAGAGAGGGTT........................................................................................................................................................................................................................221.000.00-----------------------------------------------------1.00-------------
.................................................................................................................................................................................................................................ACACACACGTAGATATCAATGA...2211.001.00---------------------------------------1.00---------------------------
...............................................................................................................................................................................................................ATGAATCAACGGTGGAGCA........................1911.001.00--------------------1.00----------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGGCT......................................................................................................191.000.00---------------------1.00---------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGGGCT.....................................................................................................2011.001.00---------1.00---------------------------------------------------------
.....................................................................................................................................................................................................................CAACGGTGGAGCACACACACGTAGAT...........2611.001.00-------------------------------------1.00-----------------------------
............TGAGGGGCAGGGAGAGTGGT..........................................................................................................................................................................................................................201.000.00----------1.00--------------------------------------------------------
........................................................................................................................................................................................................ATGCCTCATGAATCAACGGTGGAGC.........................2511.001.00-1.00-----------------------------------------------------------------
............TGAGGGGCAGGGAGAGAGACTT........................................................................................................................................................................................................................221.000.00-----------1.00-------------------------------------------------------
..................................................................................................................................................................................CCTCTAGCTTTTTTCTGTCTAG..................................................2211.001.00-------------------1.00-----------------------------------------------
..................................................................................................................................GGGGTTAGGATTTGGCCT......................................................................................................181.000.00------------------------------------------------1.00------------------
..........................................................................................................................................................................TTTCTGAGCCTCTAGCTTTTTTCT........................................................2411.001.00-------------------------------------------------1.00-----------------
.................................................................................................................................AGGGGTTAGGATTTGGCAT......................................................................................................191.000.00------1.00------------------------------------------------------------
.............................................................................................................................................................................................................TCATGAATCAACGGTGGAG..........................1911.001.00---------------------------------------------1.00---------------------
............TGAGGGGCAGGGAGAGAGACT.........................................................................................................................................................................................................................211.000.00----------1.00--------------------------------------------------------
.............................................................................................................................................TTGGGGAGTAGCTACCACG..........................................................................................191.000.00-----------------1.00-------------------------------------------------
....................................................................................................................................................................................................................TCAACGGTGGAGCACACACACGTAGA............2611.001.00-1.00-----------------------------------------------------------------
............TGAGGGGCAGGGAGAGAGGCTCT.......................................................................................................................................................................................................................231.000.00----------------1.00--------------------------------------------------
...............................................................................................................................AGAGGGGTTAGGATTTTAT........................................................................................................191.000.00---------------1.00---------------------------------------------------
............TGAGGGGCAGGGAGAGAGACTG........................................................................................................................................................................................................................221.000.00----------1.00--------------------------------------------------------
............TGAGGGGCAGGGAGAGAGGTGTT.......................................................................................................................................................................................................................231.000.00-----------1.00-------------------------------------------------------
..........................................................................................................................................GATTTGGGGAGTAGCTACTTTGC.........................................................................................2311.001.00------------------------------------1.00------------------------------
............TGAGGGGCAGGGAGAGAGTTG.........................................................................................................................................................................................................................211.000.00------------------1.00------------------------------------------------
.................................................................................................................................AGGGGTTAGGATTTGGGTGT.....................................................................................................201.000.00----1.00--------------------------------------------------------------
..................................................................................................................................................................................................................AATCAACGGTGGAGCA........................1620.500.50-----------------------------0.50-------------------------------------
............TGAGGGGCAGGGAGAGACTTT.........................................................................................................................................................................................................................2160.170.17-----------------0.17-------------------------------------------------
............TGAGGGGCAGGGAGAGATACT.........................................................................................................................................................................................................................2160.170.17-----------------------------------------------------------------0.17-
............TGAGGGGCAGGGAGAGATTTG.........................................................................................................................................................................................................................2160.170.17------------------0.17------------------------------------------------
............TGAGGGGCAGGGAGAGA.............................................................................................................................................................................................................................1760.170.17------------------------------------------------------------------0.17

Antisense strand
TGGGCACCATTTTGAGGGGCAGGGAGAGAGGAAGACAGGCAACTATAAGTAGTTCTATGAAGATAAGTCTATATTGACTTGTCCTGTGGTCCATTATAGATGTAATTGCATGGCCACCTAACAGAGGAGAGGGGTTAGGATTTGGGGAGTAGCTACTTTGCTCTGCCTGCTTTCTGAGCCTCTAGCTTTTTTCTGTCTAGATGCCTCATGAATCAACGGTGGAGCACACACACGTAGATATCAATGAGAT
.............................................................................................................................((((((((((((((.((..(((((((((...........)).)))))))..))..))))))))))))))........................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577742(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189784SRR189782SRR037936(GSM510474)
293cand1. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................TAGAGGCTCAGAAAGCAGGCAGAGC.................................................................. 2512.002.00-2.00-----------------------------------------------------------------
........................................................................................................................................................................................TTCATGAGGCATCTAGACAGAAAAAAGC...................................... 2811.001.00-1.00-----------------------------------------------------------------
....................................................................................ACATCTATAATGGACCACA................................................................................................................................................... 1911.001.00--------------------------------------1.00----------------------------
...............................................................................TTACATCTATAATGGACCACAGGACA................................................................................................................................................. 2611.001.00-1.00-----------------------------------------------------------------
.................................................................................................................................................................................TGAGGCATCTAGACAGAAAAAAGCTAGAGGC.......................................... 3111.001.00-1.00-----------------------------------------------------------------
..........................................................................................................................................................................TAGACAGAAAAAAGCTAGAGGCTCAGAAA................................................... 2911.001.00-1.00-----------------------------------------------------------------
..............................TCATAGAACTACTTATAGTTGCCTGTCTTC.............................................................................................................................................................................................. 3011.001.00-1.00-----------------------------------------------------------------
..........................................................................................................................................GATTTGGGGAGTAGCTAAC............................................................................................. 191.000.00--------------------------------------------1.00----------------------
............................................................................................................................................................TAGAGGCTCAGAAAGCAGGCAGAGCAAA.................................................................. 2811.001.00-1.00-----------------------------------------------------------------
..............................................................................................................................................................................................CGTTGATTCATGAGGCATCTAGACAGAA................................ 2811.001.00-1.00-----------------------------------------------------------------
...................................................................................................................................................CTCAGAAAGCAGGCAGAGCAAAGTAGCTACT........................................................................ 3111.001.00---------------------------------------------------------------1.00---