ID: uc010qpc.1_intron_8_0_chr10_99512940_f.5p
GENE: (9)
chr10:99512890-99513139+


(5)
B-CELL 		(1)
BRAIN 		(8)
BREAST 		(17)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(1)
HELA 		(11)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GTCTCGGCTCACGGAGCGGCTCCGCAAGCGCTACCCCACCAACAACTTCGGTGCGGCCAGGGGACAGGGCTGGGCTGGTGGGGGAGTGGGGGTGGACTTCTGGGACTCTAGTGGGGAACACCCAGCCACAGGGGCAGAGTCTCAGAACTGTGGGTACTGACTTGTGACAAGAGCAGGGAGTGAAGGTGTGTCCGCGGGACCCCGGGGAGCTAGCAGATGCCCGGCAGGACTGCTGAGGGAGTGGGTGTGG
..................................................((.(((((.........))))).))........((((.((.....(((((((((((((...((((.....))))(((.....))).)))))))))))..)).....)).)))).......................................................................................
..................................................51......................................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189784SRR343335SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191424(GSM715534)
138genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
..........................................................AGGGGACAGGGCTGGGCTG.............................................................................................................................................................................1928.508.50-2.50--1.000.50-----0.501.000.501.00-----------------------------------------0.50-0.500.50------
..........................................................AGGGGACAGGGCTGGGCTGGGGA.........................................................................................................................................................................2327.503.50--------1.001.00--------------1.00--1.00-0.501.00----------1.001.00-----------------------
..........................................................AGGGGACAGGGCTGGGCTGGGTA.........................................................................................................................................................................2325.003.50-----1.00--1.00--1.00---1.00-----------------------------1.00--------------------
..........................................................AGGGGACAGGGCTGGGCTGGGA..........................................................................................................................................................................2224.003.50-----1.00-2.00-----1.00----------------------------------------------------
..........................................................AGGGGACAGGGCTGGGCTGG............................................................................................................................................................................2023.503.50----1.00-------0.50-0.50-----------------------------------0.50-0.50-0.50-----------
..........................................................AGGGGACAGGGCTGGGCTGGGAA.........................................................................................................................................................................2323.003.50-3.00----------------------------------------------------------------
..........................................................AGGGGACAGGGCTGGGCT..............................................................................................................................................................................1872.142.14-0.43--0.57------0.290.14--0.14----------------------------------0.29-------------0.140.14
..........................................................AGGGGACAGGGCTGGGCTGGT...........................................................................................................................................................................2112.002.00-----------------1.00----------------1.00-------------------------------
..........................................................AGGGGACAGGGCTGGGCTGGGAG.........................................................................................................................................................................2322.003.50------2.00-----------------------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTATAG192.000.001.00-1.00---------------------------------------------------------------
.......................................................................................................................................................................................AGGTGTGTCCGCGGGACCCCGGGGAGCTAGCAG..................................3312.002.00-------------------------------------1.00-1.00--------------------------
..........................................................AGGGGACAGGGCTGGGCTGGGGAA........................................................................................................................................................................2422.003.50--------------------------------------1.00-------1.00-------------------
........................................................................................................................................................GGTACTGACTTGTGACAAGAGCG...........................................................................231.000.00-------------------------------------------------1.00----------------
..............................................................................TGGGGGAGTGGGGGTGTGGT........................................................................................................................................................201.000.00----------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTTGTG191.000.00-----------------------------------------------1.00------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTACAG191.000.001.00-----------------------------------------------------------------
..............................................................................................................................................................................................TCCGCGGGACCCCGGTACG.........................................191.000.00--1.00---------------------------------------------------------------
.........................................................................GCTGGTGGGGGAGTGAGAA..............................................................................................................................................................191.000.00------------------------------------1.00-----------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTAGAG191.000.001.00-----------------------------------------------------------------
................................................................................................................................................................CTTGTGACAAGAGCAAAT........................................................................181.000.00----------------1.00-------------------------------------------------
.............................................................................................................................................................................CAGGGAGTGAAGGTGT.............................................................1631.001.00---------------------------------------------------0.67--------0.33-----
..............................................................................TGGGGGAGTGGGGGTGTTCT........................................................................................................................................................201.000.00---------------------1.00--------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTGAGG191.000.00----------1.00-------------------------------------------------------
...............................TACCCCACCAACAACTGA.........................................................................................................................................................................................................181.000.00--------------------------------1.00---------------------------------
.........................................................................................................................................................................AGAGCAGGGAGTGAAGGTG..............................................................1911.001.00-----------------------1.00------------------------------------------
.............................................................GGACAGGGCTGGGCTGCAA..........................................................................................................................................................................191.000.00---------------------------------1.00--------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTGGGA191.000.00--------------------1.00---------------------------------------------
..........................................................AGGGGACAGGGCTGGGCTGGGGT.........................................................................................................................................................................2321.003.50---------1.00--------------------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTGGGTGT211.000.00--------------------------------------------1.00---------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTGAGAA201.000.001.00-----------------------------------------------------------------
..............................................................................................................................................CAGAACTGTGGGTACTTGCT........................................................................................201.000.00----------------------------------------1.00-------------------------
.................................................................AGGGCTGGGCTGGTGGCTG......................................................................................................................................................................191.000.00-------------------------1.00----------------------------------------
.......................................................................................................................................AGAGTCTCAGAACTGTGGGTACTGACTTG......................................................................................2911.001.00----------------------1.00-------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTATG181.000.001.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTGTAG191.000.001.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTGGGGG201.000.00--------------------------1.00---------------------------------------
.........................................................................................................................................................................................................................................TGAGGGAGTGGGTGTAA171.000.001.00-----------------------------------------------------------------
..........................................................AGGGGACAGGGCTGGGCTGGGTTA........................................................................................................................................................................2421.003.50------------------------------------------------1.00-----------------
...........................................................GGGGACAGGGCTGGGCTGG............................................................................................................................................................................1920.500.50-----------------------------------------------------0.50------------
..........................................................AGGGGACAGGGCTGGGCTGGGT..........................................................................................................................................................................2220.503.50---------------------------------------------------------0.50--------
............................................................GGGACAGGGCTGGGCTGG............................................................................................................................................................................1820.500.50-----------------------------0.50------------------------------------
..........................................................AGGGGACAGGGCTGGGCTGGGAAA........................................................................................................................................................................2420.503.50-------------------------------------------------------0.50----------
........................................................................................................................................GAGTCTCAGAACTGTG..................................................................................................1640.250.25-------------------------------------------------------------0.25----
.................................................................AGGGCTGGGCTGGTGGGG.......................................................................................................................................................................1840.250.25--------------------------------------------------------------0.25---

Antisense strand
GTCTCGGCTCACGGAGCGGCTCCGCAAGCGCTACCCCACCAACAACTTCGGTGCGGCCAGGGGACAGGGCTGGGCTGGTGGGGGAGTGGGGGTGGACTTCTGGGACTCTAGTGGGGAACACCCAGCCACAGGGGCAGAGTCTCAGAACTGTGGGTACTGACTTGTGACAAGAGCAGGGAGTGAAGGTGTGTCCGCGGGACCCCGGGGAGCTAGCAGATGCCCGGCAGGACTGCTGAGGGAGTGGGTGTGG
..................................................((.(((((.........))))).))........((((.((.....(((((((((((((...((((.....))))(((.....))).)))))))))))..)).....)).)))).......................................................................................
..................................................51......................................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189784SRR343335SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191424(GSM715534)
138genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...........................................................................................................................................................................................................GGGGAGCTAGCAGATATGA............................ 192.000.00---2.00--------------------------------------------------------------
..............................CTACCCCACCAACAATGGC......................................................................................................................................................................................................... 192.000.00--1.00----------------1.00----------------------------------------------
...........................................................................................................................................................................................................GGGGAGCTAGCAGATATG............................. 182.000.00---1.00------------------------1.00-------------------------------------
.......................................................................................................................................AGAGTCTCAGAACTGTCCG................................................................................................ 192.000.001.00------------------------------------------1.00----------------------
....................................................................................................................................................................................................GGACCCCGGGGAGCTTCT.................................... 181.000.00-----------------------------------1.00------------------------------
........................................................................................................................................................................................................................ATGCCCGGCAGGACTACCA............... 191.000.00------------------1.00-----------------------------------------------
............................CGCTACCCCACCAACAAGAGA......................................................................................................................................................................................................... 211.000.00-------------------------------1.00----------------------------------
.........................................................................CCCACTCCCCCACCAGC................................................................................................................................................................ 1760.170.17---------------------------------------------------------------0.17--