ID: uc010qhh.1_intron_1_0_chr10_51679748_f.5p
GENE: (2)
chr10:51679698-51679947+


(4)
AGO2.ip
(2)
BRAIN
(15)
CELL-LINE
(5)
CERVIX
(1)
HEART
(2)
OTHER
(9)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGCCTGATATGGTGAAAATTGCACTCTGTCTGCCAAATATTTGCACCCAGGTTAGTGGATGTAGCTTCCTCAGTAGCTTCCCTGAGACTGACAATTGAATTTCCCTTAAACTTGAATGGCCAGGGTCACAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGAGAGAGAGGAAGAGAAGAGAAGAGAAGAAATGGGAAACAGTTTTTGCCAAAGAGTATAGTAATTTTGCTGTATTAAGGAAA

................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................AGAGACAGAGAGAGAGAGAGAGAG.............................................................................24013.0013.00-5.002.00---1.003.00--1.00-----------1.00----------------
.....................................................................................................................................................AGAGACAGAGAGAGAGAGAGAGAGA............................................................................2504.004.00-3.00----1.00--------------------------------
.....................................................................................................................................................AGAGACAGAGAGAGAGAGAGAGA..............................................................................2304.004.00-2.001.00--1.00---------------------------------
...................................................................................................................................................AGAGAGACAGAGAGAGAGAGAGAGAGA............................................................................2702.002.00--2.00------------------------------------
.....................................................................................................................................................AGAGACAGAGAGAGAGAGAGAGAGAG...........................................................................2602.002.00-1.00----1.00--------------------------------
....................................................................................................................................................GAGAGACAGAGAGAGAGAGAGAGAG.............................................................................2502.002.00--1.00--1.00---------------------------------
......................................................................................................................................GAGAGAGAGAGACAGAGAGACGC.............................................................................................232.000.00------------1.00------------1.00-------------
................AATTGCACTCTGTCTGACTG......................................................................................................................................................................................................................201.000.00------------------1.00--------------------
....................................................................................................................................................GAGAGACAGAGAGAGAGAGAGAGAGCGCT.........................................................................2901.002.00--------1.00------------------------------
..................................................................................................................................GAGAGAGAGAGAGAGACAGAGAGACGC.............................................................................................271.000.001.00--------------------------------------
....................................................................................................................................................GAGAGACAGAGAGAGAGAGAGAGA..............................................................................2401.001.00--1.00------------------------------------
...............................................................................................................................ACAGAGAGAGAGAGAGAGACGT.....................................................................................................221.000.00----1.00----------------------------------
.....................................................................................................................................AGAGAGAGAGAGACAGAGAGCGTT.............................................................................................241.000.00---------------------1.00-----------------
.............................................................................................................................................................................AGAGGAAGAGAAGAGATTA..........................................................191.000.00-----------------------1.00---------------
.....................................................................................................................................................................................AGAAGAGAAGAGAAGAATC..................................................191.000.00-----------------------------1.00---------
.................................................................................................................................AGAGAGAGAGAGAGAGACAGAGAGGAGA.............................................................................................281.000.00------------------------1.00--------------
...................................................................................................................................................AGAGAGACAGAGAGAGAGAGAGAGAG.............................................................................2601.001.00--1.00------------------------------------
.....................................................................................................................................................AGAGACAGAGAGAGAGAGAGAGAGAAA..........................................................................2701.004.00----------1.00----------------------------
............................................................................................................................................................................................AAGAGAAGAAATGGGGGAC...........................................191.000.00---------------------------1.00-----------
.........................................................................................................................................AGAGAGAGACAGAGAGAC...............................................................................................1801.001.00-----------------1.00---------------------
..............................................................................................................................CACAGAGAGAGAGAGAGAGACTAAA...................................................................................................251.000.001.00--------------------------------------
.........................................................................................................................................................ACAGAGAGAGAGAGAGAGAGAGAGGAAC.....................................................................281.000.00----1.00----------------------------------
..............................................................................................................................CACAGAGAGAGAGAGAGAGACAGAGAGGG...............................................................................................291.000.001.00--------------------------------------
...........................................................................................................................................AGAGAGACAGAGAGACAGAG...........................................................................................2001.001.00--------------1.00------------------------
.....................................................................................................................................AGAGAGAGAGAGACAGAGAGACGC.............................................................................................241.000.00---------1.00-----------------------------
....................................................................................................................................................GAGAGACAGAGAGAGAGAGAGAG...............................................................................2301.001.00--1.00------------------------------------
.....................................................................................................................................................AGAGACAGAGAGAGAGAGAGAGAGAA...........................................................................2601.004.00-----1.00---------------------------------
...................................................................................................................................................AGAGAGACAGAGAGAGAGAGAGAG...............................................................................2401.001.00-1.00-------------------------------------
...............................................................................................................................................AGACAGAGAGACAGAGAGAGAGAGAGAGAGAGGA.........................................................................341.000.00----1.00----------------------------------
..........................................................................................................................................................................GAGAGAGGAAGAGAAGCTGG............................................................201.000.00----------------1.00----------------------
...........................................................................................................................................AGAGAGACAGAGAGACAGA............................................................................................1901.001.00-------------1.00-------------------------
.....................CACTCTGTCTGCCAAATATTTG...............................................................................................................................................................................................................2240.500.50------------------------------0.50--------
.......................................................................................CTGACAATTGAATTTCCCTTAAA............................................................................................................................................2330.330.33-------------------------------0.33-------
........ATGGTGAAAATTGCACTCT...............................................................................................................................................................................................................................1940.250.25---------------------------------0.25-----
...............AAATTGCACTCTGTCTGCCAAATATT.................................................................................................................................................................................................................2640.250.25--------------------------------0.25------
..................................................GTTAGTGGATGTAGCTTC......................................................................................................................................................................................1840.250.25------------------------------------0.25--
..............................................................................................................................CACAGAGAGAGAGAGAGAGACAGAGAGACAGAG...........................................................................................3340.250.250.25--------------------------------------
...................................AATATTTGCACCCAGGTTAGTGGAT..............................................................................................................................................................................................2540.250.25----------------------------------0.25----
..................................................GTTAGTGGATGTAGCTTCCTCAGTAGC.............................................................................................................................................................................2740.250.25-----------------------------------0.25---
........................TCTGTCTGCCAAATATT.................................................................................................................................................................................................................1750.200.20-------------------------------------0.20-
............TGAAAATTGCACTCTG..............................................................................................................................................................................................................................1660.170.17--------------------------------------0.17
................................................................................................................................CAGAGAGAGAGAGAGAGACAGAGAGACAG.............................................................................................2980.120.120.12--------------------------------------

Antisense strand
TGCCTGATATGGTGAAAATTGCACTCTGTCTGCCAAATATTTGCACCCAGGTTAGTGGATGTAGCTTCCTCAGTAGCTTCCCTGAGACTGACAATTGAATTTCCCTTAAACTTGAATGGCCAGGGTCACAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGAGAGAGAGGAAGAGAAGAGAAGAGAAGAAATGGGAAACAGTTTTTGCCAAAGAGTATAGTAATTTTGCTGTATTAAGGAAA

................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................GTCTCTCTGTCTCTCTCT............................................................................................... 1802.002.00---2.00-----------------------------------
....................................................................................................................................................GAGAGACAGAGAGAGAGAGAGAGACGT........................................................................... 2702.000.00---------1.00-----1.00-----------------------
.....................................................................................................................................AGAGAGAGAGAGACAGAGAGACAGAGTGT........................................................................................ 291.000.001.00--------------------------------------
...............................................................................................................................................................................AGGAAGAGAAGAGAAGAGAAGAAATTG................................................ 271.000.00----------------------------1.00----------
.................................................................................................................................AGAGAGAGAGAGAGAGACAGAGAATTT.............................................................................................. 271.000.001.00--------------------------------------
................................................................................................................................CAGAGAGAGAGAGAGAGACAGACTT................................................................................................. 251.000.001.00--------------------------------------
......................................................................................................................GCCAGGGTCACAGAGATTGT................................................................................................................ 201.000.00--------------------------1.00------------
.......................................................................................................................................AGAGAGAGAGACAGAGAGACAGAGCCT........................................................................................ 271.000.001.00--------------------------------------
.....................................................................................................................................AGAGAGAGAGAGACAGAGAGACAGGTGC......................................................................................... 281.000.001.00--------------------------------------
...............................................................................................................................ACAGAGAGAGAGAGAGAGACAGTCC.................................................................................................. 251.000.00--------------------1.00------------------
.................................................................................................................................CTCTGTCTCTCTGTCTCTCTCTCTCTCTCT........................................................................................... 3001.001.00---1.00-----------------------------------
.......................................................................................................................................AGAGAGAGAGACAGAGAGACGTGC........................................................................................... 241.000.00-------------------1.00-------------------
...............................................................................................................................................................AGAGAGAGAGAGAGAGAGGAAGAGTGC................................................................ 271.000.001.00--------------------------------------
................................................................................................................................CAGAGAGAGAGAGAGAGACAGACTCC................................................................................................ 261.000.001.00--------------------------------------
.......................................................................................................................................................AGACAGAGAGAGAGAGAGAGAGAGAGGGTCT.................................................................... 311.000.001.00--------------------------------------
........................................................................................................................................................................GAGAGAGAGGAAGAGAAGCG.............................................................. 201.000.00--------1.00------------------------------
.................................................................................................................................AGAGAGAGAGAGAGAGACAGAGAGACACCGA.......................................................................................... 311.000.001.00--------------------------------------
.......................................................................................................................................AGAGAGAGAGACAGAGAGACAGAGTGC........................................................................................ 271.000.001.00--------------------------------------
.....................................................................................................................................AGAGAGAGAGAGACAGAGAGACAGAGTGC........................................................................................ 291.000.001.00--------------------------------------
..................................................................................................................................GAGAGAGAGAGAGAGACAGAGAGACACCC........................................................................................... 291.000.001.00--------------------------------------
...............................................................................................................................ACAGAGAGAGAGAGAGAGACAGAGATCCT.............................................................................................. 291.000.001.00--------------------------------------
....................................................................................................................................................GAGAGACAGAGAGAGAGAGAGAGCGT............................................................................ 2601.000.00-----------1.00---------------------------
....................................................................................................................................GAGAGAGAGAGAGACAGAGAGACAGAGCT......................................................................................... 291.000.001.00--------------------------------------
...............................................................................................................................TGTCTCTCTGTCTCTCTCTCTCTCTCTGT.............................................................................................. 2970.140.140.14--------------------------------------
...................................................................................................................................................................TCTTCTCTTCTCTTCCTCTCTCTCTCTCT.......................................................... 2970.140.140.14--------------------------------------
.........................................................................................................................................................................TCTCTTCTCTTCTCTTCCTCTCTCT........................................................ 2590.110.110.11--------------------------------------