ID: uc010qbb.1_intron_2_0_chr10_7839142_f.5p
GENE: (3)
chr10:7839092-7839341+


(5)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(6)
HEART 		(3)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(22)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
AGCTGAGAGAGAGCTGAAACCAGCTCGAATATATGGATTGGGATCTTTAGGTAAGGGAAGAGTGTAATTCACAAATTAGGAAGAACTGTTTCACACAAGGAAGACTACTGATGACTTACATTTAGAGCTTACAGTGATGTCAAGCCTATCTGAGCACTTGCCATGTACTTATTTTTCATCTACATCCACTTGACACGTAATGATAACAACCCGTGTAGGTAGTACAGGTAGGGACTGTTAGAATCCCTGC
.............................................................................................................(((((....((..(((.(((((((....))).)))))))..)).((....))..............)))))......................................................................
............................................................................................93........................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.................................................................................................................................TACAGTGATGTCAAGCCTATCTGAGC...............................................................................................26128.0028.007.00-8.00-7.00--------3.00---1.00--------------1.00-------1.00------------------------------
................................................................................................................................TTACAGTGATGTCAAGCCTATCTGAGC...............................................................................................27119.0019.0013.00-----5.00------------------1.00---------------------------------------------
...............................TATGGATTGGGATCTTTAGCTCT....................................................................................................................................................................................................2314.000.00-4.00------4.00-----1.00---1.00-----1.001.001.00---1.00----------------------------------------
.................................TGGATTGGGATCTTTAG........................................................................................................................................................................................................17110.0010.00---7.00-1.00-----------1.00-----------------1.00-----------------------------------
.................................TGGATTGGGATCTTTAGCT......................................................................................................................................................................................................1917.0010.00-5.00-------------------1.00-----------1.00-------------------------------------
...........................AATATATGGATTGGGATCTTTA.........................................................................................................................................................................................................2213.003.00-----------------------1.00-------------1.00-1.00-------------------------------
...........................AATATATGGATTGGGATCTTTAG........................................................................................................................................................................................................2313.003.00-3.00---------------------------------------------------------------------
.........................CGAATATATGGATTGGGA...............................................................................................................................................................................................................1813.003.00-------1.00--------2.00------------------------------------------------------
..................ACCAGCTCGAATATATGGATTG..................................................................................................................................................................................................................2213.003.00------------3.00----------------------------------------------------------
.........................CGAATATATGGATTGGGAT..............................................................................................................................................................................................................1913.003.00-------1.00------------------------------------1.00-------------1.00------------
......................GCTCGAATATATGGATTGGGATCTTTAG........................................................................................................................................................................................................2812.002.00-----------2.00-----------------------------------------------------------
................................ATGGATTGGGATCTTTAGCTCT....................................................................................................................................................................................................2212.002.00--------1.00-------------------------------------1.00------------------------
.......................CTCGAATATATGGATTGGGATCTTTAGC.......................................................................................................................................................................................................282.000.00----------------------1.00--------------------1.00---------------------------
................................ATGGATTGGGATCTTTAG........................................................................................................................................................................................................1812.002.00--------------1.00---------------------1.00----------------------------------
..............................ATATGGATTGGGATCTTTAG........................................................................................................................................................................................................2012.002.00---------------1.00-------------------------1.00-----------------------------
.........................CGAATATATGGATTGGGATCTTTAGCTCT....................................................................................................................................................................................................2912.001.00---------------1.00-------------1.00-----------------------------------------
.................AACCAGCTCGAATATATGGATT...................................................................................................................................................................................................................2212.002.00-------------------2.00---------------------------------------------------
..........................GAATATATGGATTGGGATC.............................................................................................................................................................................................................1921.501.50-0.50-----1.00---------------------------------------------------------------
...............................TATGGATTGGGATCTTTAGCT......................................................................................................................................................................................................211.000.00--------------------------1.00--------------------------------------------
......................GCTCGAATATATGGATTGGGATC.............................................................................................................................................................................................................2311.001.00-----1.00-----------------------------------------------------------------
................................................................................................................................TTACAGTGATGTCAAGCCTATCTGAG................................................................................................2611.001.00-----------------1.00-----------------------------------------------------
.................................................................................................AGGAAGACTACTGATTACG......................................................................................................................................191.000.00----------1.00------------------------------------------------------------
..................................................................................................................................................................................................................................GGTAGGGACTGTTAGAATCCCTG.2311.001.00--------------1.00--------------------------------------------------------
...................................GATTGGGATCTTTAGCTCT....................................................................................................................................................................................................191.000.00---------1.00-------------------------------------------------------------
....................CAGCTCGAATATATGGATTGG.................................................................................................................................................................................................................2111.001.00--------------------1.00--------------------------------------------------
.............CTGAAACCAGCTCGAATATATGGATTGG.................................................................................................................................................................................................................2811.001.00-----------------------1.00-----------------------------------------------
.......................CTCGAATATATGGATTGGGATCTTTAGCTC.....................................................................................................................................................................................................301.000.00-----1.00-----------------------------------------------------------------
................................ATGGATTGGGATCTTTAGC.......................................................................................................................................................................................................1911.002.00--------------------------------------------------------1.00--------------
.................................TGGATTGGGATCTTTAGCTC.....................................................................................................................................................................................................2011.0010.00----------------1.00------------------------------------------------------
.......................CTCGAATATATGGATTGGG................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00-----------------------
...........................AATATATGGATTGGGATCTTTAGC.......................................................................................................................................................................................................2411.003.00---------1.00-------------------------------------------------------------
......................GCTCGAATATATGGATTGGGATCTTTA.........................................................................................................................................................................................................2711.001.00---------1.00-------------------------------------------------------------
.........................CGAATATATGGATTGGGATC.............................................................................................................................................................................................................2011.001.00-------1.00---------------------------------------------------------------
..............................................................................................................................................................................................................................TACAGGTAGGGACTGTTAGAATCTG...251.000.00--------------------------------------1.00--------------------------------
.......................CTCGAATATATGGATTGGGAT..............................................................................................................................................................................................................2111.001.00-----1.00-----------------------------------------------------------------
..............................................TTAGGTAAGGGAAGAGTGTAATTCACAAATTAGGA.........................................................................................................................................................................3511.001.00-----------------------------------------------------------1.00-----------
...........................AATATATGGATTGGGATC.............................................................................................................................................................................................................1821.001.00-0.50--------------------------0.50------------------------------------------
................................................................................................................................................................CCATGTACTTATTTTAGTT.......................................................................191.000.00---------------------------1.00-------------------------------------------
...............................TATGGATTGGGATCTTTA.........................................................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------
.....................AGCTCGAATATATGGATTGGGATCTTTA.........................................................................................................................................................................................................2811.001.00--------------------------------------------------1.00--------------------
..............................ATATGGATTGGGATCTTTAGC.......................................................................................................................................................................................................2111.002.00------------------------------------------1.00----------------------------
.................................................................................................AGGAAGACTACTGATCTTG......................................................................................................................................191.000.00----------------------------------1.00------------------------------------
...TGAGAGAGAGCTGAAACC.....................................................................................................................................................................................................................................1821.001.00--------------------------------------------------------------0.50--0.50-----
.....................AGCTCGAATATATGGATTG..................................................................................................................................................................................................................1911.001.00---------1.00-------------------------------------------------------------
......................GCTCGAATATATGGATTGGGATCTTTAGCT......................................................................................................................................................................................................3011.002.00------------------1.00----------------------------------------------------
........................TCGAATATATGGATTGGGATC.............................................................................................................................................................................................................2111.001.00------------------------------------------------1.00----------------------
......................GCTCGAATATATGGATTGG.................................................................................................................................................................................................................1911.001.00-------1.00---------------------------------------------------------------
..........................................................................ATTAGGAAGAACTGTGTA..............................................................................................................................................................181.000.00---------------------------------------------------------1.00-------------
...............................................TAGGTAAGGGAAGAGTATAG.......................................................................................................................................................................................201.000.00----------1.00------------------------------------------------------------
.........................CGAATATATGGATTGGGATCTTTAG........................................................................................................................................................................................................2511.001.00-----------1.00-----------------------------------------------------------
........................TCGAATATATGGATTGGGATCTTTAGCT......................................................................................................................................................................................................281.000.00-------------------------------------------------1.00---------------------
................................................................................................................................TTACAGTGATGTCAAGCCTATCT...................................................................................................2311.001.00------------------------------------------------------1.00----------------
.....................AGCTCGAATATATGGATT...................................................................................................................................................................................................................1811.001.00---------------------------------------------------1.00-------------------
.................................................................................................AGGAAGACTACTGATTCTG......................................................................................................................................191.000.00----------1.00------------------------------------------------------------
.................................................................................................AGGAAGACTACTGATTTTG......................................................................................................................................191.000.00----------1.00------------------------------------------------------------
........................TCGAATATATGGATTGGGATCTTTAGCTCT....................................................................................................................................................................................................301.000.00------------------1.00----------------------------------------------------
.....................AGCTCGAATATATGGATTGGGATC.............................................................................................................................................................................................................2411.001.00----------------------------1.00------------------------------------------
....................CAGCTCGAATATATGGATTGGGATCTTTAGC.......................................................................................................................................................................................................311.000.00----------------------------------------------------1.00------------------
..............TGAAACCAGCTCGAATATATGGATTGGG................................................................................................................................................................................................................2811.001.00---------------1.00-------------------------------------------------------
.....................AGCTCGAATATATGGATTGGGAT..............................................................................................................................................................................................................2311.001.00-----1.00-----------------------------------------------------------------
..........................................ATCTTTAGGTAAGGGAAGTCGG..........................................................................................................................................................................................221.000.00--------------------1.00--------------------------------------------------
........................TCGAATATATGGATTGGGAT..............................................................................................................................................................................................................2011.001.00-------------------------------1.00---------------------------------------
...TGAGAGAGAGCTGAAACCAGCT.................................................................................................................................................................................................................................2220.500.50---------0.50-------------------------------------------------------------
..CTGAGAGAGAGCTGAAAC......................................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------0.50---------
..CTGAGAGAGAGCTGAAACCAGC..................................................................................................................................................................................................................................2220.500.50----------------------------------------------------------------0.50------
............................ATATATGGATTGGGATCTT...........................................................................................................................................................................................................1920.500.50------------------------------------------------------------0.50----------
..CTGAGAGAGAGCTGAAACC.....................................................................................................................................................................................................................................1920.500.50---------------------------------------------------------------0.50-------
.............................................TTTAGGTAAGGGAAG..............................................................................................................................................................................................1590.440.44--------------------------------------------------------------------0.220.22-
..............................................................................................................................................................TGCCATGTACTTATTTTT..........................................................................1830.330.33------------------------------------------------------------------0.33----
................................ATGGATTGGGATCTTT..........................................................................................................................................................................................................1640.250.25------------------------------------------------------------0.25----------
.............................................TTTAGGTAAGGGAAGTCG...........................................................................................................................................................................................1890.220.44-------------------------------------------------------------------0.11--0.11
.............................................TTTAGGTAAGGGAAGTC............................................................................................................................................................................................1790.110.44-------------------------------------------------------------------0.11---

Antisense strand
AGCTGAGAGAGAGCTGAAACCAGCTCGAATATATGGATTGGGATCTTTAGGTAAGGGAAGAGTGTAATTCACAAATTAGGAAGAACTGTTTCACACAAGGAAGACTACTGATGACTTACATTTAGAGCTTACAGTGATGTCAAGCCTATCTGAGCACTTGCCATGTACTTATTTTTCATCTACATCCACTTGACACGTAATGATAACAACCCGTGTAGGTAGTACAGGTAGGGACTGTTAGAATCCCTGC
.............................................................................................................(((((....((..(((.(((((((....))).)))))))..)).((....))..............)))))......................................................................
............................................................................................93........................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.......CATATATTCGAGCTGGTTTCAGCTCTCT....................................................................................................................................................................................................................... 2813.003.00------------------------1.00----------------------------1.00-1.00---------------
...........................................TCTTTAGGTAAGGGAAGGCT........................................................................................................................................................................................... 201.000.00---------------------------------------------1.00-------------------------
................AAACCAGCTCGAATAAGAA....................................................................................................................................................................................................................... 191.000.00----------------------1.00------------------------------------------------
........................................................................................................................TTTAGAGCTTACAGTGC................................................................................................................. 171.000.00---------------------1.00-------------------------------------------------
...........................................................................................................................AGAGCTTACAGTGATTCT............................................................................................................. 181.000.00---------------------------1.00-------------------------------------------