ID: uc010pvo.1_intron_0_0_chr1_226822588_r.3p
GENE: (7)
chr1:226822538-226822787-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(18)
CELL-LINE 		(7)
CERVIX 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTGGAACCCGATGCCCTCTGCCCAGGCATGGCCATTCTTGGGCCGGCTCTGCTGCCTGTCTGAAAATGGGGATTGGAATTGCAGGCACCCAACTGTCCGGCCTGAGCGAGCCTCCCCACCTGGTCACCCAGGCCCCGGGCCGCAGTGGGGAGGGCGAGGCCCGGGCTTCAGCTCACCCTTCACCCCCATGTTCTCCTCAGGTCATTGGCAGCTCCCTCCTCTTCATCCACGACAAGAAGGAACAGGCCAA
......................................................................................................................(((((....))))).((((((((...((.......))..)))))))).....................................................................................
......................................................................................................................119.................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR029128(GSM416757)
H520. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189783
....................................................................................................................................................GGAGGGCGAGGCCCGCGGC...................................................................................1949.000.005.006.003.005.003.002.004.003.003.00--2.001.001.001.00--1.001.00-------1.001.001.00----1.001.00-----1.00--1.00-1.00--------
....................................................................................................................................................GGAGGGCGAGGCCCGCGG....................................................................................1814.000.004.00-1.00--2.00---1.00----1.00--------1.00------------1.00-----------1.001.00-1.00--
...................................................................................................................................................GGGAGGGCGAGGCCCGCG.....................................................................................183.000.00-------------------------1.00----1.00----------------1.00------
.....................................................................................................................................................................................................................................CGACAAGAAGGAACAGGCC..1912.002.00--2.00---------------------------------------------------
..................................................................................................................................................................................................................................CCACGACAAGAAGGAACAGGC...2111.001.00------------------------1.00-----------------------------
.............................................................................................................................................................................................................................TTCATCCACGACAAGAAGGAACAGC....251.000.00---------------------------------------1.00--------------
....................................................................................................................................................GGAGGGCGAGGCCCGCGGA...................................................................................191.000.00-------------------------------------1.00----------------
....................................................................................................................................................GGAGGGCGAGGCCCGCGGT...................................................................................191.000.00----1.00-------------------------------------------------
...........................................................................................................................TCACCCAGGCCCCGGGC..............................................................................................................1711.001.00----------1.00-------------------------------------------
......................................................................................................................................................AGGGCGAGGCCCGGGCGGAG................................................................................201.000.00--------------------------------1.00---------------------
....................................................................................................................................................................................................................................ACGACAAGAAGGAACAGGCCA.2111.001.00--------------------------------------1.00---------------
.....................................................................................................................................................................................................................................CGACAAGAAGGAACAGGC...1811.001.00------------1.00-----------------------------------------
.................................................................................................................................................TGGGGAGGGCGAGGCGGGG......................................................................................191.000.00--------------------------------------------------1.00---
................................................................AATGGGGATTGGAATTGCAGGC....................................................................................................................................................................2211.001.00----------1.00-------------------------------------------
.........................................................................................CAACTGTCCGGCCTGA.................................................................................................................................................1611.001.00----------------1.00-------------------------------------
...................................................................................................................................................................................................................................CACGACAAGAAGGAACAGGCCA.2211.001.00------------------------------------------1.00-----------
....................................................................................................................................................GGAGGGCGAGGCCCGAGGC...................................................................................191.000.00--------------------------------------------1.00---------
.....................................................................................................................................................................................................................................CGACAAGAAGGAACAG.....1611.001.00--------------------1.00---------------------------------
....................................................................................................................................................GGAGGGCGAGGCCCGCGAC...................................................................................191.000.00----------------------1.00-------------------------------
...................................................................................................................................................GGGAGGGCGAGGCCCGT......................................................................................171.000.00----------------------------------------------1.00-------
..........................................................................................AACTGTCCGGCCTGAGCGAGCCTCTC......................................................................................................................................261.000.00-------------------1.00----------------------------------
..................................................................................................................CCCACCTGGTCACCCAGGC.....................................................................................................................1911.001.00-----------------------------------1.00------------------
...............................................................AAATGGGGATTGGAATTGC........................................................................................................................................................................1911.001.00---------------1.00--------------------------------------
..........................................................................................................................................GCCGCAGTGGGGAGGGC...............................................................................................1720.500.50---------------0.50--------------------------------------
.................CTGCCCAGGCATGGCCAT.......................................................................................................................................................................................................................1830.330.33-----------------------------------------------------0.33

Antisense strand
CTGGAACCCGATGCCCTCTGCCCAGGCATGGCCATTCTTGGGCCGGCTCTGCTGCCTGTCTGAAAATGGGGATTGGAATTGCAGGCACCCAACTGTCCGGCCTGAGCGAGCCTCCCCACCTGGTCACCCAGGCCCCGGGCCGCAGTGGGGAGGGCGAGGCCCGGGCTTCAGCTCACCCTTCACCCCCATGTTCTCCTCAGGTCATTGGCAGCTCCCTCCTCTTCATCCACGACAAGAAGGAACAGGCCAA
......................................................................................................................(((((....))))).((((((((...((.......))..)))))))).....................................................................................
......................................................................................................................119.................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR029128(GSM416757)
H520. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189783
.............................................................................................................................................GCAGTGGGGAGGGCGTTC........................................................................................... 181.000.00-------------1.00----------------------------------------
................................................................................................................................................................CCGGGCTTCAGCTCATCTC....................................................................... 191.000.00---------------------1.00--------------------------------
.....................................................................................................................................................................................................................CCCTCCTCTTCATCCACT................... 181.000.00-----------------------------1.00------------------------
................................................................................................................................................................CCGGGCTTCAGCTCAAGA........................................................................ 181.000.00-----------------------------------------1.00------------
...............................................................................................................................CCAGGCCCCGGGCCGCC.......................................................................................................... 171.000.00---------1.00--------------------------------------------
............................................................................................................................................................................................................TTGGCAGCTCCCTCCAGG............................ 181.000.00-------------------------------1.00----------------------
...............................................................................................................GTGACCAGGTGGGGAG........................................................................................................................... 1630.330.33----------------------------------------------------0.33-