ID: uc010puk.1_intron_31_0_chr1_220386311_r.5p
GENE: RAB3GAP2(3)
chr1:220386998-220387247-


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(7)
BREAST
(17)
CELL-LINE
(9)
CERVIX
(3)
HEART
(2)
LIVER
(3)
OTHER
(15)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CAATGATCTTATGGTGATAGCTCGAGAGCAAAAAGCTGTATTTCTAGTGCGTGAGTATCCTATTATTTTCAGCGACCTTTATTTTGATACATTGGATAGAAGAGAAAATGGATTAGGTGAAAAGAATATAATGCTTTTTATTTATTTATTTCTCTCTCTCTCCCCCCCCCCCCAACTCCTCCTCCGCCCCCTCCCTCCCTCCCTCTCCATTTCCCTCTTTCTCCCCCTTCCATTCTGTTTGTTTTCTCCC
......................................................(((((..........................)))))...(((.((.((((((((((((.(((((((((((.........)))))))))))))))))).))))))).))).......................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189784GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR343336TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532888(GSM532888)
G761T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................ATCCTATTATTTTCACAG................................................................................................................................................................................18270.000.00138.0077.0036.0019.00----------------------------------------------------------
........................................................ATCCTATTATTTTCACAT................................................................................................................................................................................189.000.007.00-1.001.00----------------------------------------------------------
.....ATCTTATGGTGATAGCTCGAG................................................................................................................................................................................................................................2119.009.00----8.00--------------------------------------1.00------------------
........................................................ATCCTATTATTTTCACA.................................................................................................................................................................................178.000.003.003.002.00-----------------------------------------------------------
.........................................................................................................................................................CTCTCTCTCCCCCCCGCT...............................................................................186.000.00----------------1.00-----------1.00----1.00---1.00----------------1.001.00------
.......................................................................................................................................................CTCTCTCTCTCCCCCCCGCT...............................................................................204.000.00---------1.00--1.00-----------------------------1.00---------1.00---------
...........................GCAAAAAGCTGTATTTCTAG...........................................................................................................................................................................................................2012.002.00-----------------2.00--------------------------------------------
........................................................ATCCTATTATTTTCACAA................................................................................................................................................................................182.000.001.001.00------------------------------------------------------------
...........................................................................................................................................................................................................................TCTCCCCCTTCCATTCTGA............192.000.00---------------2.00----------------------------------------------
......................................................................................................................................................TCTCTCTCTCTCCCCCCCGCTC..............................................................................222.000.00---------------------------------------------------------1.00-1.00--
.......................................................................................................................................................CTCTCTCTCTCCCCCCCGCTC..............................................................................212.000.00---------1.00--------------1.00-------------------------------------
.......................................................................................................................................TTTTATTTATTTATTTCTCAAC.............................................................................................222.000.00--1.00-------1.00---------------------------------------------------
.....................................................................................................................................CTTTTTATTTATTTATTTCTTG...............................................................................................222.000.00---2.00----------------------------------------------------------
.....................................................................................................................................CTTTTTATTTATTTATCTTC.................................................................................................201.000.00----------1.00---------------------------------------------------
.....................................................................................................................................................................................................................................CCATTCTGTTTGTTTTCTTGGC221.000.00----1.00---------------------------------------------------------
..........................................................................................................................................TATTTATTTATTTCTCTCTCTCTCTAG.....................................................................................271.000.00--1.00-----------------------------------------------------------
.....ATCTTATGGTGATAGCTCGAGAGCA............................................................................................................................................................................................................................2511.001.00------------1.00-------------------------------------------------
.............................................................................................................................................TTATTTATTTCTCTCTCTGAGG.......................................................................................221.000.00----------1.00---------------------------------------------------
................................................................................ATTTTGATACATTGGATAGAAGAGAAAATGGAT.........................................................................................................................................3311.001.00--------------------------------------------------1.00-----------
.........TATGGTGATAGCTCGAG................................................................................................................................................................................................................................1711.001.00-----------------------------------------------------1.00--------
.AATGATCTTATGGTGATAGCTCGAGAGCA............................................................................................................................................................................................................................2911.001.00---------------------1.00----------------------------------------
..............................................................................................................................................................TCTCCCCCCCCCCCCGCG..........................................................................181.000.00-------1.00------------------------------------------------------
......................................................................................................................................TTTTTATTTATTTATTTCTATG..............................................................................................221.000.00---1.00----------------------------------------------------------
......................................................................................................................................TTTTTATTTATTTATTTCTAAG..............................................................................................221.000.00---1.00----------------------------------------------------------
..........................................................................................................................................................TCTCTCTCCCCCCCCCCGGGG...........................................................................211.000.00--------------------------------------------------------1.00-----
.....................................................................................................................................CTTTTTATTTATTTATTTCTTTCG.............................................................................................241.000.00--1.00-----------------------------------------------------------
............................................................................................TGGATAGAAGAGAAAATGGAT.........................................................................................................................................2111.001.00--------------------------------------------1.00-----------------
........................................................................................................................................................TCTCTCTCTCCCCCCCGCTC..............................................................................201.000.00---------------------------------------------------1.00----------
............................................................................................TGGATAGAAGAGAAAATGGATTAGGTGA..................................................................................................................................2811.001.00------------------1.00-------------------------------------------
.........................................................................................................AAATGGATTAGGTGATA................................................................................................................................171.000.00-------------------------------------------------1.00------------
............................................................................................................................................................TCTCTCCCCCCCCCCGGGG...........................................................................191.000.00-----------------------1.00--------------------------------------
..........................................................................................................................................................TCTCTCTCCCCCCCCCCCCGAA..........................................................................221.000.00-------1.00------------------------------------------------------
............................................................................................................................................................................................CCCTCCCTCCCTCCCTCTCCAGGCC.....................................251.000.00----------------------------------------1.00---------------------
.......................................................................................................................................................CTCTCTCTCTCCCCCCCCGTC..............................................................................211.000.00-------------------------1.00------------------------------------
........................................................................................................................................TTTATTTATTTATTTCTCATTG............................................................................................221.000.00---1.00----------------------------------------------------------
.......................................................................................................................................................CTCTCTCTCTCCCCCCCACTC..............................................................................211.000.00------------------------------------------------1.00-------------
......................................................................................................................................TTTTTATTTATTTATTTCTGGC..............................................................................................221.000.00-----1.00--------------------------------------------------------
........................................................ATCCTATTATTTTCACCG................................................................................................................................................................................181.000.00---1.00----------------------------------------------------------
........................................................ATCCTATTATTTTCACGT................................................................................................................................................................................181.000.001.00-------------------------------------------------------------
........................................................................................................................................................TCTCTCTCTCCCCCCCCGTC..............................................................................201.000.00----------------1.00---------------------------------------------
.......................................................................................................................................................CTCTCTCTCTCCCCCCCCGT...............................................................................201.000.00------------------------------1.00-------------------------------
......................................................................................................................................................TCTCTCTCTCTCCCCCCCTC................................................................................201.000.00---------1.00----------------------------------------------------
.........................................................................................................................................................CTCTCTCTCCCCCCCGCTC..............................................................................191.000.00------------------------------------------------------------1.00-
........................................................................................................................................................TCTCTCTCTCCCCCCCCCCCCCCGG.........................................................................251.000.00----------------------------------------------------------1.00---
...........................................................................................................................................................CTCTCTCCCCCCCCCCGTC............................................................................191.000.00-----------------------------------1.00--------------------------
........TTATGGTGATAGCTCGAGA...............................................................................................................................................................................................................................1911.001.00------------------1.00-------------------------------------------
........................................................................................................................................................TCTCTCTCTCCCCCCCCCCGGGG...........................................................................231.000.00--------------1.00-----------------------------------------------
.........................................................................................................................................................CTCTCTCTCCCCCCCCGGC..............................................................................191.000.00--------------------1.00-----------------------------------------
........................................................................................................................................................TCTCTCTCTCCCCCCCCCCGGC............................................................................221.000.00---------------------------1.00----------------------------------
........................................................................................................................................TTTATTTATTTATTTCTCAATG............................................................................................221.000.00-----1.00--------------------------------------------------------
......................................................................................................................................TTTTTATTTATTTATTTCTGGG..............................................................................................221.000.00-----1.00--------------------------------------------------------
................................................................................................................................................................TCCCCCCCCCCCCAACGC........................................................................181.000.00----------------------------------1.00---------------------------
...........................................................................................................................................................CTCTCTCCCCCCCCCCCCGGGG.........................................................................221.000.00--------------1.00-----------------------------------------------
.....................................................................................................................................CTTTTTATTTATTTATTGTTG................................................................................................211.000.00--------1.00-----------------------------------------------------
......................................................................................................................................................................CCCCCCCAACTCCTCCTCCGCCCCCTCCC.......................................................2911.001.00--------------------------------1.00-----------------------------
.............................................................................................................................................................CTCTCCCCCCCCCCCCGGC..........................................................................191.000.00-------1.00------------------------------------------------------
......................................................................................................................................................TCTCTCTCTCTCCCCCCCCCCCCGCCG.........................................................................271.000.00-------1.00------------------------------------------------------
..........................................TCTAGTGCGTGAGTAT................................................................................................................................................................................................1611.001.00----------------------1.00---------------------------------------
.....................................................................................................................................CTTTTTATTTATTTATTTCTACAG.............................................................................................241.000.00--1.00-----------------------------------------------------------
.......................................................................................................................................TTTTATTTATTTATTTCTGGC..............................................................................................211.000.00-----1.00--------------------------------------------------------
...........................................................................................................................................ATTTATTTATTTCTCTCCTTT..........................................................................................211.000.00-----1.00--------------------------------------------------------
.......................................................................................................................................................CTCTCTCTCTCCCCCCCCCCCCCTC..........................................................................251.000.00-----------------------------1.00--------------------------------
.........................................................................................................................................................................CCCCAACTCCTCCTCCGCC..............................................................1920.500.50--------------------0.50-----------------------------------------

Antisense strand
CAATGATCTTATGGTGATAGCTCGAGAGCAAAAAGCTGTATTTCTAGTGCGTGAGTATCCTATTATTTTCAGCGACCTTTATTTTGATACATTGGATAGAAGAGAAAATGGATTAGGTGAAAAGAATATAATGCTTTTTATTTATTTATTTCTCTCTCTCTCCCCCCCCCCCCAACTCCTCCTCCGCCCCCTCCCTCCCTCCCTCTCCATTTCCCTCTTTCTCCCCCTTCCATTCTGTTTGTTTTCTCCC
......................................................(((((..........................)))))...(((.((.((((((((((((.(((((((((((.........)))))))))))))))))).))))))).))).......................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189784GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR343336TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532888(GSM532888)
G761T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................TCTCTCCCCCCCCCCCATC........................................................................... 192.000.00------2.00-------------------------------------------------------
.............................................................................................................................................................CTCTCCCCCCCCCCCCA............................................................................ 172.000.00------1.00------1.00------------------------------------------------
.......................................................................................................................................................CTCTCTCTCTCCCCCCCCCGA.............................................................................. 211.000.00-----------------------------------------------1.00--------------
............................................................................................................................................................TCTCTCCCCCCCCCCCTTG........................................................................... 191.000.00--------1.00-----------------------------------------------------
............................................................................................................................................................TCTCTCCCCCCCCCCATC............................................................................ 181.000.00------1.00-------------------------------------------------------
................................................................................................................................................................................TCCTCCTCCGCCCCCTCACG...................................................... 201.000.00-----------1.00--------------------------------------------------
....................................................................................................................................................................................CCTCCGCCCCCTCCCTC..................................................... 171.000.00--------------------------1.00-----------------------------------
............................................................................................................................................................TCTCTCCCCCCCCCCCCC............................................................................ 181.000.00---------------------------------------------1.00----------------
............................................................................................................................................................TCTCTCCCCCCCCCCCCAAC.......................................................................... 201.000.00--------------------------------------1.00-----------------------
..............................................................................................................................................................................................CTCCCTCCCTCCCTCTCCCGG....................................... 211.000.00-------------------1.00------------------------------------------
...........................................................................................................................................................CTCTCTCCCCCCCCCCGGC............................................................................ 191.000.00-------------------------------1.00------------------------------
.............................................................................................................................................................CTCTCCCCCCCCCCCC............................................................................. 161.000.00------------------------------------1.00-------------------------
...........................................................................................................................................................CTCTCTCCCCCCCCCCCGGA........................................................................... 201.000.00---------------------------------------1.00----------------------
...............................................................................................................................................................................................................CATTTCCCTCTTTCTATAA........................ 191.000.00-----------------------------------------1.00--------------------
.........................................................................................................................................................CTCTCTCTCCCCCCCCCTCA............................................................................. 201.000.00-------------1.00------------------------------------------------
................................................................................................................................................................AGGAGGAGTTGGGGGGGGGGGGA................................................................... 2311.001.00-----------1.00--------------------------------------------------
...........................................................................................................................................................................CCAACTCCTCCTCCGCCCCCAAAA....................................................... 241.000.00--------1.00-----------------------------------------------------
.....................................................................................................................................................................CCCCCCCCAACTCCTCCTGA................................................................. 201.000.00----------------------------------------------1.00---------------
....................................................GAGTATCCTATTATTTCTC................................................................................................................................................................................... 191.000.00-------------------1.00------------------------------------------
................................................................................................................................................................................................................GGGGAGAAAGAGGGAAAT........................ 1820.500.50-------------------------------------------------------------0.50
........................................................................................................................................................................................GGGAGGGAGGGAGGGGGCG............................................... 1940.250.25-----------0.25--------------------------------------------------