ID: uc010pto.1_intron_2_0_chr1_213173726_r
GENE: (6)
chr1:213173676-213174177-


(1)
AGO2.ip
(1)
BRAIN
(4)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(2)
HELA
(4)
LIVER
(3)
OTHER
(7)
SKIN
(1)
TESTES
(3)
UTERUS
(2)
XRN.ip

Sense strand
ACAGAACTGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGAAAAGACAGGTAAGTGTTTGTAATACATTTTGGCAGTCTGCTGGGTAATCATGTTCCCTTTGAAGACATAAAACTAAGTTTTTAAAAAGAAAAAATCTCAGGGATGAATATTCATATATATAAATATGTAGTTATTCATTTTTTTTCTTAAGACCTCTAAATTTACCTTTTTAAAGTTGAACTTCCAGAATTATCTGTGCATGATTTACTTGCATGTTGCTTTGGAATTGTTTGCATTTTTCTATTTTTCCTAATTCTGGAGGCCATCGAAATATATAGATTCCAGAATGAAACATGTAACTAGGCATCTTTCTAACCTAGATAAGTCTTAAATATTGTTTCTAGAGTAAGATGACGATATTAAGGCAAACTAGAACAATAACATTAATATATTTTCCTCTATTCTTACAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACA
...............................................................................................................................................(((((.....(((((......)))))...))))).....................................................................................................................................................................................................................................................................................................................................
...............................................................................................................................128..............................................177...................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................................TATATATAAATATGTACG.........................................................................................................................................................................................................................................................................................................................................1833.000.0033.00------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................ATGACGATATTAAGGCAAACTAGAACAATAACATTAATATATTTTCCTCTATTCTTACAG..................................................6012.002.00----------2.00--------------------------
....................................................................................................................................AAAATCTCAGGGATGTCCA...............................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00------------
..AGAACTGTGTGTATGAGGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------1.00----------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGAACAATAACAATGA.........................................................................191.000.00------------------1.00------------------
......................................................................TTGGCAGTCTGCTGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------1.00----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAAACACAGCTGAAGCAAACAG..............2711.001.00-----------1.00-------------------------
.....................................GTAGAAAAGACAGGTAAGTGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--1.00----------------------------------
......................................................................................................................................AATCTCAGGGATGAATAT..............................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------1.00---------
...................................................................................................................................................AATATTCATATATATAAATATA.............................................................................................................................................................................................................................................................................................................................................221.000.00---------------------------------1.00---
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCTGACACAAACACAGCTGAAGC....................2711.001.00---------------------1.00---------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGACACAAACACAGCTGAAGCAAAAAAA.............311.000.00------1.00------------------------------
....................................................................................................................................................................ATATGTAGTTATTCAATTG...............................................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00-------------------
.....................................GTAGAAAAGACAGGTAAGTGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------1.00-----------------------------
...........................................................................................................................................................TATATATAAATATGTACGTA.......................................................................................................................................................................................................................................................................................................................................201.000.00-------------1.00-----------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACACAAACACAGCTGAAGCAAAC................2711.001.00----------------------------1.00--------
......................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGATATTAAGGCAAACTAG.......................................................................................2511.001.00---------1.00---------------------------
...........................................................................................................................................................TATATATAAATATGTACGAA.......................................................................................................................................................................................................................................................................................................................................201.000.001.00------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGGCAAACTAGAACAATAACATTA..........................................................................2811.001.00------1.00------------------------------
............................................................................GTCTGCTGGGTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--------------------------------1.00----
.......TGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.001.00-------------------------------1.00-----
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCAAACAGAGGT..........1711.001.00--------------------------1.00----------
.................AGGTACAGCAGGTACCAAAAGTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00------------------------------1.00------
.........................................................................................................................................................................................................................................................................................................................................................................................................TGACGATATTAAGGCAAACTAGA......................................................................................2311.001.00--------1.00----------------------------
.........................................................................................................................................................................................................................................................................................................CTGGAGGCCATCGAAAT............................................................................................................................................................................................1711.001.00------------1.00------------------------
...............................................................................................................................AAGAAAAAATCTCAGGAAC....................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------1.00-----------
.........................................................................................................................................................................................................................................................................................................................................................................................................TGACGATATTAAGGCAAACTAG.......................................................................................2211.001.00---------1.00---------------------------
...........................................................................................................................................................TATATATAAATATGTAGGTGT......................................................................................................................................................................................................................................................................................................................................211.000.00----------------1.00--------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACACAAACACAGCTGAAGCAA..................2511.001.00-----------------------1.00-------------
...........................................................................................................................................................TATATATAAATATGTACGT........................................................................................................................................................................................................................................................................................................................................191.000.00-----1.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAAACACAGCTGAAG.....................2011.001.00-------1.00-----------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTAATATATTTTCC...............................................................1820.500.50-----------------------------------0.50-

Antisense strand
ACAGAACTGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGAAAAGACAGGTAAGTGTTTGTAATACATTTTGGCAGTCTGCTGGGTAATCATGTTCCCTTTGAAGACATAAAACTAAGTTTTTAAAAAGAAAAAATCTCAGGGATGAATATTCATATATATAAATATGTAGTTATTCATTTTTTTTCTTAAGACCTCTAAATTTACCTTTTTAAAGTTGAACTTCCAGAATTATCTGTGCATGATTTACTTGCATGTTGCTTTGGAATTGTTTGCATTTTTCTATTTTTCCTAATTCTGGAGGCCATCGAAATATATAGATTCCAGAATGAAACATGTAACTAGGCATCTTTCTAACCTAGATAAGTCTTAAATATTGTTTCTAGAGTAAGATGACGATATTAAGGCAAACTAGAACAATAACATTAATATATTTTCCTCTATTCTTACAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACA
...............................................................................................................................................(((((.....(((((......)))))...))))).....................................................................................................................................................................................................................................................................................................................................
...............................................................................................................................128..............................................177...................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189784SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................AAAAAATCTCAGGGAAACC................................................................................................................................................................................................................................................................................................................................................................. 1914.000.00-10.003.00-1.00--------------------------------
................................................AGGTAAGTGTTTGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 203.000.00---3.00---------------------------------
..................................................................................................................................AAAAAATCTCAGGGAAAC.................................................................................................................................................................................................................................................................................................................................................................. 182.000.00-1.00--1.00--------------------------------
..................................................................................................................................................GAATATTCATATATATCCTG................................................................................................................................................................................................................................................................................................................................................ 201.000.00-----------------------------1.00-------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATATATTTTCCTCATG.......................................................... 191.000.00----------------------1.00--------------
...........................................................................................................................................CAGGGATGAATATTCTAGC........................................................................................................................................................................................................................................................................................................................................................ 191.000.00---------------1.00---------------------
..................................................................................................................................................GAATATTCATATATATCATA................................................................................................................................................................................................................................................................................................................................................ 201.000.00--------------1.00----------------------
...............................................................................................................................................GATGAATATTCATATATCA.................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------1.00--
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCTTACAGACATTTC........................................... 191.000.00-----1.00-------------------------------
...........................................................................................................................................CAGGGATGAATATTCCAGC........................................................................................................................................................................................................................................................................................................................................................ 191.000.00-------------------1.00-----------------
..........................................................................................................................................................................................................................................................................................................................................GAAACATGTAACTAGTAGA......................................................................................................................................................... 191.000.001.00------------------------------------