ID: uc010psf.1_intron_2_0_chr1_207497926_f
GENE: (3)
chr1:207497876-207498061+


(1)
AGO1.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(4)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(14)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(25)
SKIN 		(2)
XRN.ip

Sense strand
TTGTTGCTGCTTTTGTTAATACTTTTAGGTAGCTGCGAGGTGCCAACAAGGCTAAATTCTGCATCCCTCAAACAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGCCTTCAGAAT
..................................................((........))...((...(((((.....(((((((..(((.....))).))).)))))))))..))....................................................................
..................................................51.....................................................................122..............................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAG......................................6419.009.007.002.00--------------------------------------------------------------------
............................................................................................................ACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACC......................5617.007.007.00---------------------------------------------------------------------
.................................................................................................TTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGCCTTCA....8517.007.007.00---------------------------------------------------------------------
...........................................................................CCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGA.....................................7416.006.006.00---------------------------------------------------------------------
.................................................................................ATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATC.........................8016.006.00-6.00--------------------------------------------------------------------
..................................................................................TCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGA..........................................6216.006.00-6.00--------------------------------------------------------------------
.................................................................................ATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTAC.............................................6015.005.00-4.00--------1.00-----------------------------------------------------------
..............................................................................................ATTTTCCAGTCGGTACTGTTGTGG....................................................................2415.005.00--4.00------------------1.00------------------------------------------------
.............................................................................TTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGA.......................................7015.005.005.00---------------------------------------------------------------------
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCT............................7415.005.00-5.00--------------------------------------------------------------------
.......................................................................................................................ATATGAGTGCCGTCCAGGTTACAGA..........................................2514.004.00---4.00------------------------------------------------------------------
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAA......................................644.000.004.00---------------------------------------------------------------------
..................................................................................TCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAAA...................................694.000.004.00---------------------------------------------------------------------
.........................................................................................GAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTT...............................................5014.004.004.00---------------------------------------------------------------------
...................................................................................CACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGA.....................................6614.004.00-4.00--------------------------------------------------------------------
...........................................................................................ATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGCCTTCAG...9214.004.00-4.00--------------------------------------------------------------------
..........................................................................................AATTATTTTCCAGTCGGTA.............................................................................1914.004.00-----3.00----------------------------------------1.00-----------------------
..................................................................................................TCCAGTCGGTACTGTTGTGGA...................................................................2114.004.00-----------4.00----------------------------------------------------------
...................................................................................CACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGA.......................................6414.004.00-4.00--------------------------------------------------------------------
........................................................................................................CGGTACTGTTGTGGAATATG..............................................................2014.004.00--3.00------------------------------------------------------1.00------------
..........................................................................................AATTATTTTCCAGTCGGT..............................................................................1813.003.00----2.001.00----------------------------------------------------------------
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTT...............................................5513.003.003.00---------------------------------------------------------------------
......................................................................................TCAGAATTATTTTCCAGTCGGTACTGTTGTGGAAT.................................................................3513.003.00----3.00-----------------------------------------------------------------
.............................................................................................TATTTTCCAGTCGGTACTGTTGTGGAA..................................................................2713.003.00---2.00----1.00-------------------------------------------------------------
.....................................................................................CTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAG......................................6313.003.00-3.00--------------------------------------------------------------------
............................................AACAAGGCTAAATTCTGCATCC........................................................................................................................2213.003.00---3.00------------------------------------------------------------------
..........................................................................................AATTATTTTCCAGTCGGTACTGTTGTGGAATAT...............................................................3313.003.00----2.00-1.00---------------------------------------------------------------
.................................................................CCTCAAACAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAA....................................8513.003.003.00---------------------------------------------------------------------
......................................................................................TCAGAATTATTTTCCAGTCGGTA.............................................................................2313.003.00--3.00-------------------------------------------------------------------
...................................................................................CACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAG......................................6513.003.00-3.00--------------------------------------------------------------------
..................................................................CTCAAACAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAG......................................8213.003.003.00---------------------------------------------------------------------
..............................................................................................ATTTTCCAGTCGGTACTGTTTA......................................................................223.000.00--3.00-------------------------------------------------------------------
..................................................................................TCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAT....................................683.000.003.00---------------------------------------------------------------------
..................................................................................................................GTGGAATATGAGTGCCGTCCAGGTT...............................................2513.003.00--3.00-------------------------------------------------------------------
..........................................CCAACAAGGCTAAATTCTGCAT..........................................................................................................................2212.002.00--------------2.00-------------------------------------------------------
...................................................................................CACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGA..........................................6112.002.00-------2.00--------------------------------------------------------------
............................................................................................................ACTGTTGTGGAATATGAGTGCCGTC.....................................................2512.002.00--1.00------------------------------------------1.00------------------------
.................................................................................................TTCCAGTCGGTACTGTTGTGGAATATGAGTGC.........................................................3212.002.00--------1.00--------------------------------------1.00----------------------
.................................................................................ATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAG........................................6512.002.00-------2.00--------------------------------------------------------------
...................................................................................................CCAGTCGGTACTGTTGTGG....................................................................1912.002.00-----2.00----------------------------------------------------------------
........................................................................CAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGA.....................................7712.002.00---------2.00------------------------------------------------------------
..............................................................................................ATTTTCCAGTCGGTACTGTTGTGGA...................................................................2512.002.00----1.00----1.00------------------------------------------------------------
................................................AGGCTAAATTCTGCATCCCTCAAAC.................................................................................................................2512.002.00--2.00-------------------------------------------------------------------
.................................................................................................TTCCAGTCGGTACTGTTGTGGAA..................................................................2312.002.00--2.00-------------------------------------------------------------------
......................................................................................................GTCGGTACTGTTGTGGAATATGAGTG..........................................................2612.002.00--2.00-------------------------------------------------------------------
.....................................................................................................AGTCGGTACTGTTGTGGAAT.................................................................2012.002.00---------------------------1.00---------1.00--------------------------------
..............................................................................................ATTTTCCAGTCGGTACTGTTGTGGAATA................................................................2812.002.00--2.00-------------------------------------------------------------------
.........................................................................................................GGTACTGTTGTGGAATATGAGT...........................................................2212.002.00--1.00---------1.00---------------------------------------------------------
..............................................................................................ATTTTCCAGTCGGTACTGTTGTGGAA..................................................................2612.002.00---2.00------------------------------------------------------------------
...................................................................................................................................TCCAGGTTACAGAAGAGA.....................................1822.002.00--2.00-------------------------------------------------------------------
...............................................AAGGCTAAATTCTGCATCCCTCAAACAGC..............................................................................................................2912.002.00---2.00------------------------------------------------------------------
.....................................................................................................................................CAGGTTACAGAAGAGAAC...................................1812.002.00--2.00-------------------------------------------------------------------
.......................................................................................................TCGGTACTGTTGTGGAATATGAGT...........................................................2412.002.00-----------------------------------------1.00---------------------1.00------
..............................................................................................ATTTTCCAGTCGGTACTGTTGTGGAAT.................................................................2712.002.00--------------------------------------------------------1.00---1.00---------
.......................................................................................CAGAATTATTTTCCAGTCGGTACTGTTGTGGAAT.................................................................3412.002.00------2.00---------------------------------------------------------------
...................................................................................................CCAGTCGGTACTGTTGTGGAAT.................................................................2212.002.00--2.00-------------------------------------------------------------------
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGA...................................................................3512.002.00----2.00-----------------------------------------------------------------
...................................................................................................................TGGAATATGAGTGCCGTCC....................................................1912.002.00--1.00---------------------------------------------------1.00---------------
................................................................................................................TTGTGGAATATGAGTGC.........................................................1721.501.50----------------------0.500.50------------------------------------------0.50---
............................................................................CTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAT......................................721.000.00---------1.00------------------------------------------------------------
.........................................................................................................................ATGAGTGCCGTCCAGGTT...............................................1811.001.00------------------------1.00---------------------------------------------
......................................................................................................GTCGGTACTGTTGTGGAAT.................................................................1911.001.00---1.00------------------------------------------------------------------
...................................................................................CACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAG...........................................6011.001.00----------------1.00-----------------------------------------------------
....................................................................................................CAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGCCTTC.....8111.001.00----------------1.00-----------------------------------------------------
.................................................................................ATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGA.....................................6811.001.00---------1.00------------------------------------------------------------
................................................AGGCTAAATTCTGCATCCC.......................................................................................................................1911.001.00--------------------------------------------------1.00-------------------
.......................................................................................................TCGGTACTGTTGTGGAATATGAGTGC.........................................................2611.001.00--------------------------------------1.00-------------------------------
..................................................................................................................GTGGAATATGAGTGCCGTCCAGG.................................................2311.001.00--1.00-------------------------------------------------------------------
...............................................................................................................................................AAGAGAACCTTCTCTATCACCAAAA..................2511.001.00----------------------------------------------------------1.00-----------
.......................................................................................................................................................CTTCTCTATCACCAAAAC.................1811.001.00---------------------------------------------------1.00------------------
......................................GGTGCCAACAAGGCTAAATTCTGCATCCCTCAAACAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATG..............................................................8611.001.00-------1.00--------------------------------------------------------------
........................................................................................AGAATTATTTTCCAGTCGGTACTGTTG.......................................................................2711.001.00-------------------------------------------1.00--------------------------
..............................................................................................ATTTTCCAGTCGGTACTGTTTTTT....................................................................241.000.00------------1.00---------------------------------------------------------
........................................................................................................CGGTACTGTTGTGGAAT.................................................................1711.001.00---------------1.00------------------------------------------------------
....................................................................CAAACAGCCTTATATCACTCAGAATT............................................................................................2611.001.00--------------------------------1.00-------------------------------------
...............................................................................ATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGT...........................................................4811.001.00----------1.00-----------------------------------------------------------
........................................................................................................CGGTACTGTTGTGGAATATGAGTGCC........................................................2611.001.00--------------------1.00-------------------------------------------------
...............................................AAGGCTAAATTCTGCATCC........................................................................................................................1911.001.00-----------------1.00----------------------------------------------------
..................................................................................................TCCAGTCGGTACTGTTGTGGAAT.................................................................2311.001.00---------------------------------------1.00------------------------------
..........................................................................................AATTATTTTCCAGTCGGGA.............................................................................191.000.00-----1.00----------------------------------------------------------------
..................................................................................................................GTGGAATATGAGTGCCGTCCAGGTTACAGAAGAA......................................341.000.00------1.00---------------------------------------------------------------
.................................................................................................................................CGTCCAGGTTACAGAAG........................................1711.001.00-----------------------------------1.00----------------------------------
............................GTAGCTGCGAGGTGCCAACAAGGCTAAATTCTG.............................................................................................................................3311.001.00----------------------1.00-----------------------------------------------
..................................................................................................TCCAGTCGGTACTGTTGGGGA...................................................................211.000.00-----------1.00----------------------------------------------------------
.......................................................................................................................ATATGAGTGCCGTCCAGGTTACAGAAGAGAA....................................3111.001.00------1.00---------------------------------------------------------------
.................................................................................................................................................GAGAACCTTCTCTATCACCAAAACTA...............2611.001.00----------------------------------1.00-----------------------------------
........................................................................................................................TATGAGTGCCGTCCAGGTTACAGAAGAGAA....................................3011.001.00-----------------------------------------------------1.00----------------
...............................................................................................................GTTGTGGAATATGAGTGCCGTCC....................................................2311.001.00-----------------------------1.00----------------------------------------
................................................................................................................TTGTGGAATATGAGTGCCTTC.....................................................211.000.00-----------------------1.00----------------------------------------------
.....GCTGCTTTTGTTAATACTTTTAGA.............................................................................................................................................................241.000.00-------------------------------------------------------1.00--------------
.......................................GTGCCAACAAGGCTAAATTCTGCATCCCTCAA...................................................................................................................3211.001.00-------1.00--------------------------------------------------------------
..................................................................................................................GTGGAATATGAGTGCCGTCCC...................................................211.000.00---------------1.00------------------------------------------------------
........................................................................................AGAATTATTTTCCAGTCGGTACTGTTGTGG....................................................................3011.001.00------------------------------1.00---------------------------------------
...........................................................................................ATTATTTTCCAGTCGGTACTGTTGTGGA...................................................................2811.001.00-------------------------------------------------1.00--------------------
..................................................GCTAAATTCTGCATCCCTCAAACA................................................................................................................2411.001.00-------------1.00--------------------------------------------------------
........................................................................................AGAATTATTTTCCAGTCGGTACTGTTGTGGAA..................................................................3211.001.00------1.00---------------------------------------------------------------
..........................................................................GCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGCCTTCAGA..11011.001.001.00---------------------------------------------------------------------
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTAT..........................7611.001.00----------1.00-----------------------------------------------------------
.......................................................................................CAGAATTATTTTCCAGTCGGTACTGTTGTGGAATA................................................................3511.001.00------1.00---------------------------------------------------------------
.............................................................................................................................GTGCCGTCCAGGTTACAGAAGAGAAC...................................2611.001.00--------------------1.00-------------------------------------------------
..................................................................................................................GTGGAATATGAGTGCCGTCCAGGTTA..............................................2611.001.00--1.00-------------------------------------------------------------------
.............................................................................TTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAG......................................7111.001.00----------1.00-----------------------------------------------------------
.....................................................................................................AGTCGGTACTGTTGTGGAATAACT.............................................................241.000.00-------------1.00--------------------------------------------------------
...........................................................................................ATTATTTTCCAGTCGGTACTGTTGTGGAATA................................................................3111.001.00--------1.00-------------------------------------------------------------
................................................................................................TTTCCAGTCGGTACTGTTGTGTT...................................................................231.000.00-----------------1.00----------------------------------------------------
........................................................................................AGAATTATTTTCCAGTCGGTA.............................................................................2111.001.00--1.00-------------------------------------------------------------------
.................................................................................................TTCCAGTCGGTACTGTTGTGGAATAT...............................................................2611.001.00--------------------------------------------1.00-------------------------
.......................................................................................CAGAATTATTTTCCAGTCG................................................................................1911.001.00--1.00-------------------------------------------------------------------
..............................................................................................................TGTTGTGGAATATGAGTGCCGTC.....................................................2311.001.00------------------------------------1.00---------------------------------
.................................................................................................TTCCAGTCGGTACTGTT........................................................................1711.001.00--------1.00-------------------------------------------------------------
.....................................................................................................AGTCGGTACTGTTGTGGAA..................................................................1911.001.00-------------------1.00--------------------------------------------------
..................................................................................................TCCAGTCGGTACTGTTGTGGAATA................................................................2411.001.00-------------------1.00--------------------------------------------------
.............................................................................................TATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTT...............................................4611.001.001.00---------------------------------------------------------------------
..................................................................................TCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAG......................................6611.001.00---------1.00------------------------------------------------------------
.............................TAGCTGCGAGGTGCCAAC...........................................................................................................................................1811.001.00----------------------------------------------------------------1.00-----
...................................................................................................CCAGTCGGTACTGTTGTGGAATATG..............................................................2511.001.00---1.00------------------------------------------------------------------
.....................................................................................................AGTCGGTACTGTTGTGGAATATGAGTGCC........................................................2911.001.00--------1.00-------------------------------------------------------------
.................................................................................................................................................................ACCAAAACTAACTTGCCTTCA....2111.001.00------------------------------------------------1.00---------------------
.....................................................................AAACAGCCTTATATCACTCAGAATTAT..........................................................................................2711.001.00----------------------------1.00-----------------------------------------
................................CTGCGAGGTGCCAACAAGGCTAAATTCTGCATCCCTCAAACAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTG..........................................................9611.001.001.00---------------------------------------------------------------------
....................................................................................ACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAG...........................................5911.001.00----------1.00-----------------------------------------------------------
.................................................................................................................................CGTCCAGGTTACAGAAGA.......................................1811.001.00---------------------------------1.00------------------------------------
................................................................................................TTTCCAGTCGGTACTGTTGTGGAAT.................................................................2511.001.00----------------------------------------1.00-----------------------------
......................................................................................................GTCGGTACTGTTGTGGAATATGAGTGCC........................................................2811.001.00---1.00------------------------------------------------------------------
.......................................................................................CAGAATTATTTTCCAGTCGG...............................................................................2011.001.00----1.00-----------------------------------------------------------------
.................................................................................ATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGGTAC.............................................601.000.00----------1.00-----------------------------------------------------------
............................................................................................................ACTGTTGTGGAATATGAGTGCCG.......................................................2311.001.00------------------1.00---------------------------------------------------
.............................................................................................TATTTTCCAGTCGGTACTGTTGTGG....................................................................2511.001.00------------------1.00---------------------------------------------------
.............................................................................................................CTGTTGTGGAATATGAGTGCCGT......................................................2311.001.00-------------------------------1.00--------------------------------------
.............................................ACAAGGCTAAATTCTGCATCCCTCAAACAGC..............................................................................................................3111.001.00-------------------------1.00--------------------------------------------
............................................AACAAGGCTAAATTCTG.............................................................................................................................1711.001.00----1.00-----------------------------------------------------------------
.............................................................................................................CTGTTGTGGAATATGAGTGCC........................................................2111.001.00--------1.00-------------------------------------------------------------
........................................................................................................CGGTACTGTTGTGGAATATGAGT...........................................................2311.001.00--1.00-------------------------------------------------------------------
............................................................................................TTATTTTCCAGTCGGTACTGTTGTGGAA..................................................................2811.001.00----------------------------------------------------1.00-----------------
........................................................................................................................................................TTCTCTATCACCAAAACTAACTTGCC........2611.001.00-----------------------------------------------------------1.00----------
..............................................CAAGGCTAAATTCTGCATCCCTCAAACAGC..............................................................................................................3011.001.00-------------------------------------------------------------1.00--------
.........................................................................................................GGTACTGTTGTGGAATATGAG............................................................2111.001.00---1.00------------------------------------------------------------------
................................................AGGCTAAATTCTGCATC.........................................................................................................................1711.001.00------------1.00---------------------------------------------------------
..........................................................................................................GTACTGTTGTGGAATATGAGTGCC........................................................2411.001.00------------------------------------------1.00---------------------------
..............................................................................................................TGTTGTGGAATATGAGTGC.........................................................1920.500.50-----------------------------------------------------------------0.50----
.............................................................................................................CTGTTGTGGAATATGAGTGC.........................................................2020.500.50---------------------0.50------------------------------------------------
...................................................................................................CCAGTCGGTACTGTT........................................................................1520.500.50-------------------------------------------------------------------0.50--
........................................................................................................................................................TTCTCTATCACCAAAA..................1680.120.12-----------------------------------------------------------------0.12----
..................................................GCTAAATTCTGCATC.........................................................................................................................1590.110.11--------------------------------------------------------------------0.11-

Antisense strand
TTGTTGCTGCTTTTGTTAATACTTTTAGGTAGCTGCGAGGTGCCAACAAGGCTAAATTCTGCATCCCTCAAACAGCCTTATATCACTCAGAATTATTTTCCAGTCGGTACTGTTGTGGAATATGAGTGCCGTCCAGGTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGCCTTCAGAAT
..................................................((........))...((...(((((.....(((((((..(((.....))).))).)))))))))..))....................................................................
..................................................51.....................................................................122..............................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)
..................................................................GATATAAGGCTGTTTGAG...................................................................................................... 1813.003.00---3.00------------------------------------------------------------------
.......................................................................................................................................................................TCTGAAGGCAAGTTAGT.. 1721.501.50-----1.50----------------------------------------------------------------
...........................................................................ATTCTGAGTGATATAAGG............................................................................................. 1811.001.00---1.00------------------------------------------------------------------
......................................................................................................................................................CCTTCTCTATCACCAACCT................. 191.000.00--------------------------------------------------------------1.00-------
............TTGTTAATACTTTTATATT........................................................................................................................................................... 191.000.00--------------------------1.00-------------------------------------------
...............................................................TCCCTCAAACAGCCTTGGA........................................................................................................ 191.000.00-----1.00----------------------------------------------------------------
.........................................................TTTGAGGGATGCAGA.................................................................................................................. 1590.110.11---------------------------------------------------------------------0.11