ID: uc010prt.1_intron_8_0_chr1_206592753_f.5p
GENE: SRGAP2(9)
chr1:206592703-206592952+


(1)
AGO2.ip 		(7)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN

Sense strand
TTTGCCTTTGTGTTTCCAACAGGTCAGCGGACAGATTGCAGTCTAGCCAGGTGAGTGTGGCCTGGGACAGGCCTGGGAAGTGATAGAGGCTTGGTGGGTAGAGCAATCTTACTCTGGGAGAGAGCCAAGGAGTTGAGTTGTAAAGGCATTGAATGACTTTACAAAGCAATGGCCTGGGGCGGGGTTTGTTTACTTCCCTTTGCCTTACTGACCCCATCTGATCTCAGATAGAAATGGGGTTTTCTGGGAC
...........................................................((((....((((((..............(((((...(((((((....))).)))).......))))).....((((..((((((((.(((...))).))))))))..))))))))))))))......................................................................
........................................................57..........................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532873(GSM532873)
G699N. (cervix)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
.............................................................CTGGGACAGGCCTGGGGGAC.........................................................................................................................................................................2037.000.0012.007.003.002.002.002.002.00-1.00-1.00-1.00-1.00----1.00---------1.00-1.00--
.............................................................CTGGGACAGGCCTGGGGGA..........................................................................................................................................................................197.000.005.00-------1.00---------------------1.00---
..............................................................TGGGACAGGCCTGGG.............................................................................................................................................................................1502.002.00-------------1.00---1.00----------------
.............................................................CTGGGACAGGCCTGGGGGAT.........................................................................................................................................................................202.000.00---1.001.00-----------------------------
.........................AGCGGACAGATTGCAGTC...............................................................................................................................................................................................................1812.002.00----------------------1.00----1.00------
.............................................................................................................................................................TTTACAAAGCAATGGCCTGG.........................................................................2011.001.00-------1.00--------------------------
.............................................................CTGGGACAGGCCTGGGGGCC.........................................................................................................................................................................201.000.001.00---------------------------------
......................................................................................AGGCTTGGTGGGTAGAGC..................................................................................................................................................1811.001.00----------------1.00-----------------
.............................................................CTGGGACAGGCCTGGGGGAG.........................................................................................................................................................................201.000.00--1.00-------------------------------
...................................................................CAGGCCTGGGAAGTGATAGAGG.................................................................................................................................................................2211.001.00-----------1.00----------------------
.......................TCAGCGGACAGATTGCA..................................................................................................................................................................................................................1711.001.00---------1.00------------------------
.............................................................................................................TACTCTGGGAGAGAGCCAAGGAGTTGAG.................................................................................................................2811.001.00-----------------------1.00----------
................................................................................................................................................................................................CTTCCCTTTGCCTTAATTT.......................................191.000.00---------------------1.00------------
............................................................CCTGGGACAGGCCTGGGAAGTGATAGAGGC................................................................................................................................................................3011.001.00-------1.00--------------------------
............................................................CCTGGGACAGGCCTGGGGGAC.........................................................................................................................................................................211.000.00--------------------------1.00-------
.............................................................CTGGGACAGGCCTGGGGTAC.........................................................................................................................................................................201.000.00------------------1.00---------------
.............................................................................................................................................................................................................................TCTCAGATAGAAATGGCAG..........191.000.00---------------1.00------------------
.............................................................................................GTGGGTAGAGCAATC..............................................................................................................................................1521.001.00--------------------1.00-------------
...............................................................GGGACAGGCCTGGGAAG..........................................................................................................................................................................1740.250.25--------------------------------0.25-
............................................................................................................................................................................CCTGGGGCGGGGTTT...............................................................1550.200.20---------------------------------0.20

Antisense strand
TTTGCCTTTGTGTTTCCAACAGGTCAGCGGACAGATTGCAGTCTAGCCAGGTGAGTGTGGCCTGGGACAGGCCTGGGAAGTGATAGAGGCTTGGTGGGTAGAGCAATCTTACTCTGGGAGAGAGCCAAGGAGTTGAGTTGTAAAGGCATTGAATGACTTTACAAAGCAATGGCCTGGGGCGGGGTTTGTTTACTTCCCTTTGCCTTACTGACCCCATCTGATCTCAGATAGAAATGGGGTTTTCTGGGAC
...........................................................((((....((((((..............(((((...(((((((....))).)))).......))))).....((((..((((((((.(((...))).))))))))..))))))))))))))......................................................................
........................................................57..........................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532873(GSM532873)
G699N. (cervix)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
.................................................................................................................................................................................................................................AGATAGAAATGGGGTATA....... 181.000.00-------------------------1.00--------
.................AACAGGTCAGCGGACTTT....................................................................................................................................................................................................................... 181.000.00------------------------1.00---------
...................AGACTGCAATCTGTCCGCTGACCTG.............................................................................................................................................................................................................. 2511.001.00----------------------------1.00-----