ID: uc010ppj.1_intron_0_0_chr1_200522896_r.5p
GENE: KIF14(27)
chr1:200523396-200523645-


(2)
AGO2.ip 		(1)
B-CELL 		(2)
BREAST 		(18)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
LIVER 		(3)
OTHER 		(3)
SKIN 		(1)
UTERUS

Sense strand
AAAACATTGCTTAGAGAAAGCTATTGAAATTATTATTTCTGCACTGAAAGGTATGATTCTCCAAATGGAGTTTATAATCAGAATTTTATATTTTAAGGAACCTTAGACATCTTTCCTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCTCGATTTCAGCTCACTGCAACCTCCGACTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAC
...........................................................................................................((((((..............))))))(((((.....(((.(((((......)))))))).)))))..............................................................................
.....................................................................................................102.......................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189786SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................ACATCTTTCCTTTTTTTTTTTG..........................................................................................................................22127.0027.00-11.005.00-7.004.00-----------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTG.........................................................................................................................2357.200.20-2.401.60-1.401.60-------------------------0.20---
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTTTG.......................................................................................................................2557.000.20-2.601.20-1.801.40-----------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTTG........................................................................................................................2456.200.20-2.401.60-0.401.80-----------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTTTTTG.......................................................................................................................245.000.00-1.001.00-2.001.00-----------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTG...........................................................................................................................2172.140.57-0.860.43-0.430.43-----------------------------
............................................................................................................ATCTTTCCTTTTTTTTTTTCG.........................................................................................................................212.000.00--2.00--------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGGGGG..............................................................................242.000.002.00----------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTTTG.........................................................................................................................222.000.00-1.00---1.00-----------------------------
......................................................................................................................................................TCAGGCTGGAGTGCAGTGGCTGTC............................................................................242.000.002.00----------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGCGC...............................................................................232.000.001.00--1.00-------------------------------
...................................................................................................................................................................................GCTCACTGCAACCTCCGACATT.................................................222.000.00----------2.00------------------------
................................................................................................................................................................................................................AAGCGATTCTCCTGCCTCAGCCTGGCT...............272.000.002.00----------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTTCTG........................................................................................................................232.000.00-2.00---------------------------------
.......................................................................................................................................................................................ACTGCAACCTCCGACTCCTGGGTA...........................................242.000.00-------------2.00---------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGGCCTTC............................................................................262.000.002.00----------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTG............................................................................................................................2071.140.14-0.570.43--0.14-----------------------------
.................................................................................................................TCCTTTTTTTTTTTGAGATTGGG..................................................................................................................231.000.00---1.00-------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTG...........................................................................................................................201.000.00-----1.00-----------------------------
..........................AAATTATTATTTCTGCACTC............................................................................................................................................................................................................201.000.00------------------------1.00----------
.....................................................................................................................................................CTCAGGCTGGAGTGCAGTGCGCA..............................................................................231.000.00---1.00-------------------------------
...................................................................................................................................................CACTCAGGCTGGAGTGCAGTGTAGG..............................................................................251.000.00---------1.00-------------------------
.......................................................................................................................................................................................................CCTGGGTTCAAGCGATTCTCCTGCATAA.......................281.000.00-----------1.00-----------------------
.................................................................................................................................................................................................................AGCGATTCTCCTGCCTCAGCCTGGTG...............261.000.001.00----------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTCTTG........................................................................................................................231.000.00----1.00------------------------------
...............................................................................................................TTTCCTTTTTTTTTTTGCTGG......................................................................................................................211.000.001.00----------------------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACTCCTGGGCT...........................................291.000.00---1.00-------------------------------
..........................AAATTATTATTTCTGCACTG............................................................................................................................................................................................................2011.001.00------------1.00----------------------
......................................................................................................................................................................................................TCCTGGGTTCAAGCGATTCTCCGTC...........................251.000.001.00----------------------------------
..........................................................................................................................................TCGCTCTGTCACTCAGGCTGGAGCCC......................................................................................261.000.001.00----------------------------------
..................................................................................................................................................TCACTCAGGCTGGAGTGCAGTGCGC...............................................................................251.000.001.00----------------------------------
...................................................................................................................................TGGAGTCTCGCTCTGTCACTCAGGCTGCAG.........................................................................................301.000.001.00----------------------------------
................................................................................................................TTCCTTTTTTTTTTTGAGTTGA....................................................................................................................221.000.001.00----------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGGCCTC.............................................................................251.000.00---1.00-------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTCG.............................................................................................................................191.000.00--1.00--------------------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACTCAA................................................241.000.00---1.00-------------------------------
............................................................................................................ATCTTTCCTTTTTTTTTTGAC.........................................................................................................................211.000.00---1.00-------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGGCTCGACC..........................................................................281.000.001.00----------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTCTTG...........................................................................................................................211.000.00--1.00--------------------------------
........................................................................................................................................................AGGCTGGAGTGCAGTGGCTCGACCG.........................................................................251.000.001.00----------------------------------
........................................................................................................................................................AGGCTGGAGTGCAGTGGCTCGCAG..........................................................................241.000.00---1.00-------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGGGTCG.............................................................................251.000.001.00----------------------------------
......................................................................................................................................................TCAGGCTGGAGTGCAGTGCGCA..............................................................................221.000.00---1.00-------------------------------
.............................................................................................................................TTGAGATGGAGTCTCGCTCTGA.......................................................................................................221.000.00------1.00----------------------------
.............................................................................................................................................................................ATTTCAGCTCACTGCAACCTCCGACTCCTGGC.............................................321.000.001.00----------------------------------
..................................................................................................................................................TCACTCAGGCTGGAGTGCAGTGCGG...............................................................................251.000.001.00----------------------------------
..................................................................................................................................................TCACTCAGGCTGGAGTGCCGT...................................................................................211.000.00--------------------------1.00--------
............................................................................................................ATCTTTCCTTTTTTTTTTAAAG........................................................................................................................221.000.00----1.00------------------------------
......................................................................................................................................................TCAGGCTGGAGTGCAGTGGCTTGGG...........................................................................251.000.001.00----------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGGCTCGGCT..........................................................................281.000.001.00----------------------------------
...............................................................................................................TTTCCTTTTTTTTTTTGAGGCG.....................................................................................................................221.000.001.00----------------------------------
....................................................................................................................................................................................................ACTCCTGGGTTCAAGCGATTCCCT..............................241.000.00---1.00-------------------------------
...........................................................................................................................................CGCTCTGTCACTCAGGC..............................................................................................1701.001.00---------------------1.00-------------
...........................................................................................................CATCTTTCCTTTTTTTTTTAAAG........................................................................................................................231.000.00-1.00---------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTAAG.........................................................................................................................221.000.00-1.00---------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTGCGCA..............................................................................241.000.001.00----------------------------------
................................................................................................................................................................................................................AAGCGATTCTCCTGCCTCAGCCTGCTT...............271.000.00-----------------------------1.00-----
...................................................................................................ACCTTAGACATCTTTCTAA....................................................................................................................................191.000.00------------1.00----------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACTCCTGGGTCC..........................................301.000.00---1.00-------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTCTG.........................................................................................................................221.000.00--1.00--------------------------------
..............................................AAAGGTATGATTCTCGCT..........................................................................................................................................................................................181.000.00-----------------------1.00-----------
...................................................................................................................................TGGAGTCTCGCTCTGTCACTCAGGCTGCAGT........................................................................................311.000.001.00----------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTTTG..........................................................................................................................2131.001.00-0.67--0.33------------------------------
....................................................................................................................................................ACTCAGGCTGGAGTGCAGTTACG...............................................................................231.000.00----------------------------1.00------
......................................................................................................................................AGTCTCGCTCTGTCACTCAGGCGGCA..........................................................................................261.000.001.00----------------------------------
...........................................................................................................CATCTTTCCTTTTTTTTTATTT.........................................................................................................................221.000.00--1.00--------------------------------
............................................................................................................ATCTTTCCTTTTTTTTTTAT..........................................................................................................................201.000.00----1.00------------------------------
................................................................................................................................................TGTCACTCAGGCTGGAGTGCAGTGCGAG..............................................................................281.000.001.00----------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTT............................................................................................................................2070.570.57--0.14-0.29--------------------------0.14---
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTCTG.......................................................................................................................2550.400.20--0.40--------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTTGG.......................................................................................................................2550.400.20-0.20---0.20-----------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTTA........................................................................................................................2450.400.20--0.20--0.20-----------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTCTTG.........................................................................................................................2370.290.14--0.29--------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTCTG..........................................................................................................................2270.290.14--0.14-0.14------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTAC.........................................................................................................................2350.200.20--0.20--------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTGG........................................................................................................................2450.200.20----0.20------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTTCG.......................................................................................................................2550.200.20-0.20---------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTTCG........................................................................................................................2450.200.20--0.20--------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTTCTTT.......................................................................................................................2550.200.20--0.20--------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTT...........................................................................................................................2150.200.20-0.20---------------------------------
..............................TATTATTTCTGCACTG............................................................................................................................................................................................................1660.170.17--------------------------------0.17--
..........................................................................................................ACATCTTTCCTTTTTTTTT.............................................................................................................................1970.140.14-----0.14-----------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTG.............................................................................................................................1970.140.14----0.14------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTTAGC.........................................................................................................................2370.140.57---0.14-------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTCTTG..........................................................................................................................2270.140.14-0.14---------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTT..............................................................................................................................1870.140.14-------------------------------0.14---
..........................................................................................................ACATCTTTCCTTTTTTTTAAG...........................................................................................................................2170.140.14--0.14--------------------------------
..........................................................................................................ACATCTTTCCTTTTTTTTTAG...........................................................................................................................2170.140.14-----0.14-----------------------------
.........................................................................................................................................................GGCTGGAGTGCAGTGGCTCGATTTCAG......................................................................2770.140.14---------------------------------0.14-

Antisense strand
AAAACATTGCTTAGAGAAAGCTATTGAAATTATTATTTCTGCACTGAAAGGTATGATTCTCCAAATGGAGTTTATAATCAGAATTTTATATTTTAAGGAACCTTAGACATCTTTCCTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCTCGATTTCAGCTCACTGCAACCTCCGACTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAC
...........................................................................................................((((((..............))))))(((((.....(((.(((((......)))))))).)))))..............................................................................
.....................................................................................................102.......................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189786SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................TGGAGTCTCGCTCTGTCACTCCCC............................................................................................... 243.000.001.00--2.00-------------------------------
.........................................................................................................................................................GGCTGGAGTGCAGTGGCTCGAGGAC........................................................................ 253.000.003.00----------------------------------
..............................................................................................................................................................................................CCTCCGACTCCTGGGTTCAAGATC.................................... 243.000.00--------3.00--------------------------
............................................................................................................................................................................................AACCTCCGACTCCTGCGA............................................ 183.000.00-------3.00---------------------------
.........................................................................................................................................................GGCTGGAGTGCAGTGGCTCGATGGGC....................................................................... 263.000.003.00----------------------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACCTG................................................. 232.000.00-----------1.00-------1.00---------------
.........................................................................................................................................................................................................TGGGTTCAAGCGATTCTCCTGCCTT........................ 252.000.00---------------2.00-------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACTCCTGCTG............................................ 281.000.00---------------------------1.00-------
........................................................................................................................................................AGGCTGGAGTGCAGTGGCTCGACGGC........................................................................ 261.000.001.00----------------------------------
..................................................................................................................................ATGGAGTCTCGCTCTGTCACTCAGAAA............................................................................................. 271.000.00--------------1.00--------------------
..........................................................................................................................................................................................GCAACCTCCGACTCCTGGGTTGAGC....................................... 251.000.001.00----------------------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACTCCTGGGCTG.......................................... 301.000.00---------1.00-------------------------
............................................................................................................................................................................................AACCTCCGACTCCTGCG............................................. 171.000.00----------------1.00------------------
.....................................................................................................................................................................................TCACTGCAACCTCCGACTCCTGGGTTCACC....................................... 301.000.001.00----------------------------------
....................................................................................................................................................................................................AGAATCGCTTGAACCCAGGAGT................................ 2201.001.00------1.00----------------------------
.............................................................................................................................................................................................AACCCAGGAGTCGGAGGT........................................... 1801.001.00------1.00----------------------------
.....................................................................................................................................................................................TCACTGCAACCTCCGACTCCTGGGTTCAACC...................................... 311.000.001.00----------------------------------
......................................................................................................................................................................................GTCGGAGGTTGCAGTG.................................................... 1601.001.00------1.00----------------------------
.............................................................................................................................................................................................ACCTCCGACTCCTGGAG............................................ 171.000.00------------------1.00----------------
.........................................................................................................................................................GGCTGGAGTGCAGTGGCTCGATTAGG....................................................................... 261.000.001.00----------------------------------
...............................................................................................................................GAGATGGAGTCTCGCTCTGTCACTCGG................................................................................................ 271.000.001.00----------------------------------
..................................................................................................................................................................................AGCTCACTGCAACCTCCGACTATG................................................ 241.000.00---1.00-------------------------------
......................................................................................................................................................................................AGTCGGAGGTTGCAGTG................................................... 1701.001.00------1.00----------------------------
..............................................................................................................................................................................TTTCAGCTCACTGCAACCTCAAAG.................................................... 241.000.00--------------------1.00--------------
..........................................................................................................................................................................................GCAACCTCCGACTCCTGGGCG........................................... 211.000.00-------------------------1.00---------
........................................................................................................................................................................................................................................CCAAGTAGCTGGGATTACCTCT 221.000.00------------------------------1.00----
.................................................................................................................................GATGGAGTCTCGCTCTGTCACTCCA................................................................................................ 251.000.00---1.00-------------------------------
......................................................................................................................................................................................CACTGCAACCTCCGACTCTT................................................ 201.000.00----------------------1.00------------
.........................................................................................................................................................GGCTGGAGTGCAGTGGCTCGAGGGC........................................................................ 251.000.001.00----------------------------------
...............................................................................................................................................................................................CTCCGACTCCTGGGTTCAAGCGATCCAC............................... 281.000.001.00----------------------------------
.................................................................................................................................GATGGAGTCTCGCTCTGTCACTCAGGCTGGACC........................................................................................ 331.000.00---1.00-------------------------------
..............................................................................................................................................................................................CCTCCGACTCCTGGGTTCTGG....................................... 211.000.00---1.00-------------------------------
..................................................................................................................................................................................TCGGAGGTTGCAGTGAGCT..................................................... 1901.001.00--------------1.00--------------------
...................................................................................................................................................................................................................CGATTCTCCTGCCTCAGCCTCCCAGCC............ 271.000.00---1.00-------------------------------
....................................................................................................................................................................................................TCGCTTGAACCCAGGAGT.................................... 1801.001.00-----------------1.00-----------------
..............................................................................................................................................................................AGTCGGAGGTTGCAGTGAGCTGAAA................................................... 2580.120.12----------------------------------0.12