ID: uc010ppg.1_intron_18_0_chr1_198701686_f.3p
GENE: PTPRC(19)
chr1:198703125-198703374+


(16)
B-CELL
(5)
BREAST
(14)
CELL-LINE
(1)
FIBROBLAST
(2)
HEART
(1)
HELA
(2)
LIVER
(4)
OTHER
(6)
SKIN

Sense strand
TTGCAAATGCTAACATGTTTAGCACAATTAAATGCCTGACCACCAATTAATAAGATTCCCTTAATACTTTGAAACTGCCCAGAGAAATTCACAATCACAAAATGATGGATCTGAAGCAATTCCTCTAACTCACAATTTTTCCTGTTAATGAGTAATTGAATGTTCAGCAAATGACATATCTCTGCATGTGTTTTCAATAGGGTTTCAAAGAACCCAGGAAATACATTGCTGCACAAGGTAATTTCTTTGA
...........................................................................(((.((((.....((...((((.....)))).))))))..)))....................................................................................................................................
..........................................................59...........................................................120................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR189787DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189785SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
TAX577743(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
.................................................................................................CAAAATGATGGATCTGAAG......................................................................................................................................191171.00171.0029.0014.0016.0015.0014.0013.009.006.007.004.007.003.005.00--3.003.001.00-2.003.00-1.002.002.00--2.00-2.002.00---1.00--1.00--1.001.001.00----1.00---
................................................................................................ACAAAATGATGGATCTGAAG......................................................................................................................................20126.0026.001.009.003.00----2.001.001.00-2.00-----3.00-----------------1.00--------1.001.00---1.00-
.................................................................................................CAAAATGATGGATCTGAA.......................................................................................................................................18111.0011.001.002.001.00-1.00----1.00-----1.001.00--1.00--1.00--------------------1.00-------
...........................................................................................................................................................................................................TTCAAAGAACCCAGGATAG............................194.000.00--------------3.00-----------------------1.00------------
...............................................................ATACTTTGAAACTGCAGAT........................................................................................................................................................................192.000.00-------------------------------2.00-------------------
...........................................................................................................................................................................................................TTCAAAGAACCCAGGAAAGGCT.........................222.000.00------------------2.00--------------------------------
...............................................................ATACTTTGAAACTGCGA..........................................................................................................................................................................172.000.00--------------------------2.00------------------------
.................................................................................................CAAAATGATGGATCTGAAGA.....................................................................................................................................2012.00171.00---------2.00-----------------------------------------
.................................................................................................CAAAATGATGGATCTGGAG......................................................................................................................................191.000.00---------------------------------1.00-----------------
..............................................................................................................................................................................................................AAAGAACCCAGGAAATACATTGCTGC..................2611.001.00---------------------1.00-----------------------------
................................................................................................ACAAAATGATGGATCTGAA.......................................................................................................................................1911.001.00------------------------------------------------1.00--
.................................................................................................CAAAATGATGGATCTGAAT......................................................................................................................................1911.0011.00-----1.00---------------------------------------------
...............................................................................................................................................................................................................AAGAACCCAGGAAATACATTGCTGC..................2511.001.00---------------------1.00-----------------------------
.......................................................................................................................................................................................................................AGGAAATACATTGCTGCACA...............2011.001.00----------------------------1.00----------------------
...........................................................................................................................................................................................................TTCAAAGAACCCAGGTCAG............................191.000.00--------------1.00------------------------------------
..................................................................................................................................................................................................................AACCCAGGAAATACATTG......................1811.001.001.00--------------------------------------------------
...........................................................................................................................................................................................................TTCAAAGAACCCAGGAC..............................171.000.00--------------------------------1.00------------------
.....................................................................TGAAACTGCCCAGAGAAATTC................................................................................................................................................................2111.001.00------------------------------------1.00--------------
................................................................................................ACAAAATGATGGATCTGAAGCAATTC................................................................................................................................2611.001.00---------------------1.00-----------------------------
...........................................................................................................................................................................................................TTCAAAGAACCCAGGACTGT...........................201.000.00----------------------------------------------1.00----
...........................................................................................................................................................................................................TTCAAAGAACCCAGGACAGT...........................201.000.00--------------------------------------------------1.00
...........................................................................................................................................................................................................TTCAAAGAACCCAGGAAAGGC..........................211.000.00--------------------------------1.00------------------
...............................................................................................................................................................................................................AAGAACCCAGGAAATACATTGCTGCACAAG.............3011.001.00----------------------------1.00----------------------
...........................................................................................................................................................................................................TTCAAAGAACCCAGGAAATTTG.........................221.000.00------------------1.00--------------------------------

Antisense strand
TTGCAAATGCTAACATGTTTAGCACAATTAAATGCCTGACCACCAATTAATAAGATTCCCTTAATACTTTGAAACTGCCCAGAGAAATTCACAATCACAAAATGATGGATCTGAAGCAATTCCTCTAACTCACAATTTTTCCTGTTAATGAGTAATTGAATGTTCAGCAAATGACATATCTCTGCATGTGTTTTCAATAGGGTTTCAAAGAACCCAGGAAATACATTGCTGCACAAGGTAATTTCTTTGA
...........................................................................(((.((((.....((...((((.....)))).))))))..)))....................................................................................................................................
..........................................................59...........................................................120................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR189787DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189785SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
TAX577743(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
...............................................................................TTTTGTGATTGTGAATTTCTCTG.................................................................................................................................................... 2315.005.00-------------5.00-------------------------------------
.................................................................................................................................................TAATGAGTAATTGAATAT....................................................................................... 182.000.00-------------------------2.00-------------------------
..........................................................................................................................................................................................................................................AAGGTAATTTCTTTGTTG 181.000.00---------------------------------------1.00-----------