ID: uc010pkl.1_intron_4_0_chr1_161197780_f
GENE: TOMM40L(5)
chr1:161197730-161198025+


(1)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(1)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(22)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTACACAGCCACTCTGACCCTAGGAAATCCTGACCTGATTGGGGAGTCGGGTGAGGAACTGGGACAGGGTTCTTTTTATCTTGGCGGCCCATTTGCTAATGTTACTATGCCTCTTCATCTTCTGTACAGTTTGGAGTTTAGAAAAGGAACTTCTTGGGCAGGCTGGGGTGGCGGTTATTGGGAGTGAGGGAGCAGGTCTGGATATTGTCTCTATGACTGACTCCATGTCTCCCCATTCCCCCACAGTGATCATGGTTGCTCACTTCCTGCAGAGCCTCACTCATCGGCTGGTGCTG
............................................................................................................................................................................((.....(((((((.(((((((....((((....(((.....)))....)))))).))))))))))))))......................................................
............................................................................................................................................................................173......................................................................246................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037938(GSM510476)
293Red. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040042(GSM532927)
G428N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGT...................................................................................................2015.005.004.00----------------1.00---------------------------------
..................................................................................................................................................................................TGGGAGTGAGGGAGCAGGTCTGG...............................................................................................2314.004.00--4.00------------------------------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCA.................................................................................................2214.002.004.00--------------------------------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCT.................................................................................................2214.004.00------3.00----------------1.00---------------------------
...............................................................................................................................................................................TATTGGGAGTGAGGGAGCAGGTTA.................................................................................................243.000.00-3.00-------------------------------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTC..................................................................................................2112.002.001.00------------------------------1.00-------------------
........................................................................................................................................................................................TGAGGGAGCAGGTCTCTTT.............................................................................................192.000.00-----1.00--------------------------------------1.00------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTA..................................................................................................2112.005.00------------2.00--------------------------------------
................................................................................................................................................................................ATTGGGAGTGAGGGAGCAGGTC..................................................................................................2212.002.00---------2.00-----------------------------------------
......................................TTGGGGAGTCGGGTGAATC...............................................................................................................................................................................................................................................191.000.00------------------------1.00--------------------------
..............................................................................................................................................................CAGGCTGGGGTGGCGCGG........................................................................................................................181.000.00----------------------1.00----------------------------
................................................................................................................................................................................ATTGGGAGTGAGGGAGCAGGTCTGGA..............................................................................................2611.001.00-----------1.00---------------------------------------
....................................................................................................................................................................................................................ATGACTGACTCCATGTCTCCCCA.............................................................2311.001.00--------------------------------1.00------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCTGGATATTGTCTCTATGACTGACTCCATGTCTCCCCATTCC.........................................................6211.001.00------------------------------------------1.00--------
.......GCCACTCTGACCCTAGGA...............................................................................................................................................................................................................................................................................1811.001.00----------------1.00----------------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCTAA...............................................................................................2411.004.00-------1.00-------------------------------------------
..............................................................................................................................................................CAGGCTGGGGTGGCGCAAT.......................................................................................................................191.000.00------------------------------------1.00--------------
...............................................................................................................................................................................TATTGGGAGTGAGGGAGCAGGCC..................................................................................................231.000.00-------------1.00-------------------------------------
....................................................................................................................................................ACTTCTTGGGCAGGCGGG..................................................................................................................................181.000.00-----------------------------1.00---------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCTGGATATT..........................................................................................2911.001.00--------------------------1.00------------------------
................................................................................................................................................................................ATTGGGAGTGAGGGAGCAGGTTAGA...............................................................................................251.000.00---------------------------1.00-----------------------
.TACACAGCCACTCTGAT......................................................................................................................................................................................................................................................................................171.000.00---------------------------------1.00-----------------
...................................................................................................................................................................................GGGAGTGAGGGAGCAGGT...................................................................................................1811.001.00-------------------------------------1.00-------------
......................................TTGGGGAGTCGGGTGAATG...............................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00---------
.......................................................................................................................................................TCTTGGGCAGGCTGGACTC..............................................................................................................................191.000.00---------------------------------------1.00-----------
........................................................................................................................................................................................TGAGGGAGCAGGTCTCA...............................................................................................171.000.00------------------------------1.00--------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTAA.................................................................................................2211.005.00----------------1.00----------------------------------
........................................................................................................................................................................................TGAGGGAGCAGGTCTCT...............................................................................................171.000.00-----1.00---------------------------------------------
................................................................................................................................................................GGCTGGGGTGGCGGTTGCT.....................................................................................................................191.000.00-------------------1.00-------------------------------
............TCTGACCCTAGGAAATCCTGACCTGAT.................................................................................................................................................................................................................................................................2711.001.00-------------------------------------------1.00-------
..........................................................................................................................................................................................................................................ATTCCCCCACAGTGAGCCA...........................................191.000.00----------------------------------1.00----------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCGAT...............................................................................................2411.002.00-----------1.00---------------------------------------
...............................................................................................................................................................................TATTGGGAGTGAGGGAGCAGGTAT.................................................................................................241.000.00---------------------1.00-----------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCAG................................................................................................2311.002.00--------1.00------------------------------------------
....................................................................................................................................................................................................................ATGACTGACTCCATGTCTCCCC..............................................................2211.001.00-------1.00-------------------------------------------
............................................................................................................................................................................................................................CTCCATGTCTCCCCATTCCCCCAA....................................................241.000.00----------1.00----------------------------------------
..................................................................................................................................TTGGAGTTTAGAAAAGGAA...................................................................................................................................................1911.001.00----1.00----------------------------------------------
.................................CCTGATTGGGGAGTCGGTG....................................................................................................................................................................................................................................................191.000.00---------------------------------------------1.00-----
..........................................................................................ATTTGCTAATGTTACCAGT...........................................................................................................................................................................................191.000.00--------1.00------------------------------------------
..ACACAGCCACTCTGACCCTAGGA...............................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00----
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAAAAG..................................................................................................211.000.00-----------------------------------1.00---------------
.........................................................................................................................................................................................................................TGACTCCATGTCTCCCCATTCCCCCTTT...................................................281.000.00----------1.00----------------------------------------
........................................................................................................................................................................................TGAGGGAGCAGGTCTATTT.............................................................................................191.000.00-----1.00---------------------------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGGTCCG................................................................................................2311.002.00-------------1.00-------------------------------------
................................................................................................................................................................................ATTGGGAGTGAGGGAGCAGG....................................................................................................2020.500.50-------------------------------------------------0.50-
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAGG....................................................................................................1920.500.50-------0.50-------------------------------------------
.................................................................................................................................................................................TTGGGAGTGAGGGAGCAG.....................................................................................................1820.500.50-----------------0.50---------------------------------
..................................................GTGAGGAACTGGGACA......................................................................................................................................................................................................................................1640.250.25------------------0.25--------------------------------
..................................................GTGAGGAACTGGGACAA.....................................................................................................................................................................................................................................1740.250.25-0.25-------------------------------------------------
................................................................................................................................................AGGAACTTCTTGGGC.........................................................................................................................................1590.110.11--------------------------------------------------0.11

Antisense strand
CTACACAGCCACTCTGACCCTAGGAAATCCTGACCTGATTGGGGAGTCGGGTGAGGAACTGGGACAGGGTTCTTTTTATCTTGGCGGCCCATTTGCTAATGTTACTATGCCTCTTCATCTTCTGTACAGTTTGGAGTTTAGAAAAGGAACTTCTTGGGCAGGCTGGGGTGGCGGTTATTGGGAGTGAGGGAGCAGGTCTGGATATTGTCTCTATGACTGACTCCATGTCTCCCCATTCCCCCACAGTGATCATGGTTGCTCACTTCCTGCAGAGCCTCACTCATCGGCTGGTGCTG
............................................................................................................................................................................((.....(((((((.(((((((....((((....(((.....)))....)))))).))))))))))))))......................................................
............................................................................................................................................................................173......................................................................246................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037938(GSM510476)
293Red. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040042(GSM532927)
G428N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................................................................................................................................................GAGGCTCTGCAGGAAGTGAGCA.................. 2212.002.00----2.00----------------------------------------------
..............................................................................................................................................CCGCCACCCCAGCCTGCCCAAGAAGTTCCTTT.......................................................................................................................... 3211.001.00------------------1.00--------------------------------
...........................................................................................................AAACTGTACAGAAGATGAAGAGGCA.................................................................................................................................................................... 2511.001.00---1.00-----------------------------------------------
..................CCTAGGAAATCCTGACTT.................................................................................................................................................................................................................................................................... 181.000.00-----------------------------------------------1.00---
...................CTAGGAAATCCTGACCGT................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------1.00--
..................................................................GGGTTCTTTTTATCTTATC................................................................................................................................................................................................................... 191.000.00--------------------------------------1.00------------
...............................................................................................................AAACTGTACAGAAGATGAAGA.................................................................................................................................................................... 2111.001.00---1.00-----------------------------------------------
...................CTAGGAAATCCTGACCGG................................................................................................................................................................................................................................................................... 181.000.00--------------1.00------------------------------------
...................................................................................................GTACAGAAGATGAAGAGGCATAGTAACA......................................................................................................................................................................... 2811.001.00---1.00-----------------------------------------------
..............................................................................................................TCCAAACTGTACAGAAGATGAAGAG................................................................................................................................................................. 2511.001.00-------------------------1.00-------------------------
...................CTAGGAAATCCTGACTG.................................................................................................................................................................................................................................................................... 171.000.00--------------1.00------------------------------------
................................................................................................GATGAAGAGGCATAGTAACATTA................................................................................................................................................................................. 2311.001.00---------------1.00-----------------------------------
...................CTAGGAAATCCTGACTGGT.................................................................................................................................................................................................................................................................. 191.000.00--------------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................CATCGGCTGGTGCTGGCCG 191.000.00----------------------------1.00----------------------
.............................................................................................................CTCCAAACTGTACAGAAGATGAAGAGG................................................................................................................................................................ 2711.001.00---------------1.00-----------------------------------
..............................................................................................................................................................................................................................................................GTTGCTCACTTCCTGCAGAGT..................... 211.000.00----------------------------------------1.00----------
..................................................................................................................................................................................................................................................ACAGTGATCATGGTTACTC................................... 191.000.00-1.00-------------------------------------------------
...................................................................................................................AACTCCAAACTGTACAGAAGATG.............................................................................................................................................................. 2311.001.00---1.00-----------------------------------------------