ID: uc010pke.1_intron_12_0_chr1_161134934_f
GENE: (13)
chr1:161134884-161135196+


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
B-CELL 		(6)
BREAST 		(16)
CELL-LINE 		(4)
CERVIX 		(8)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
ACAGCCCTGTGCCGGTGCCAGACTGGTTGGCATGTCTACAATGACTCTCGGTGAGAATAGCCTCCTATTTACATCCTGCCCCATTCCCACTCAGCCCTGACACCCTCCCCTTCTATGAAGCTCCAGGAGAGCAGAGTGCCAGGTGAAAGGAGAGGTGGAGGTCTTGCCTGATCATTTCCTGGATGCTCTGAGGTTCGGTCTTGTAGGGAGAAGGGAGTAAACAGGAATGACCACAACCCTTTCCCGATCTCCTTTTTTCCTAGTGTCTCCCCTGTCAGTGAAAACCAGGTGGCATCCAGCGAGGGCTACGTGC
...........................................................................................................................................................................................................((((((((((((((......((((.............))))....))))))))))))))...................................................
......................................................................................................................................................................................................199.............................................................263................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR191530(GSM715640)
132genomic small RNA (size selected RNA from . (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAACAGGA.......................................................................................23113.0013.003.00---------2.00--1.00---------1.00----1.00------------1.00--1.00-----1.00-1.00--1.00-------
.........................................................................................................................................................................................................TGTAGGGAGAAGGGAGTAAACAG.........................................................................................23110.0010.00-9.00-1.00-----------------------------------------------------------
....................................TACAATGACTCTCGGCAA...................................................................................................................................................................................................................................................................189.000.008.00-----------1.00--------------------------------------------------
.........................................................................................................................................................................................CTCTGAGGTTCGGTCTTGTAGGGAGAAGGGAGTAAACAGGAATGACCACAACCCTTTCCCGATCTCCTTTTTTCCTAG..................................................7818.008.00--8.00------------------------------------------------------------
..................................................................................................................................................................................................................................................CCCGATCTCCTTTTTTCCTAGT.................................................2216.006.00---2.00--------------1.00------1.001.00---------------------------1.00--------
...................................................................................................................................................AGGAGAGGTGGAGGTCTT....................................................................................................................................................1816.006.00----6.00----------------------------------------------------------
..........................................................................................................................................................................................................GTAGGGAGAAGGGAGTAAACAGG........................................................................................2315.005.00-------1.00---1.00-----1.00--------------------1.00----1.00-------------------
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAACAGGAAT.....................................................................................2515.005.00-----5.00---------------------------------------------------------
..........................................................................................................................................................................................TCTGAGGTTCGGTCTTGTAGGGAGAAGGGAGTAAACAGGAATGACCACAACCCTTTCCCGATCTCCTTTTTTCCTA...................................................7615.005.00------5.00--------------------------------------------------------
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAACAGG........................................................................................2214.004.00-------2.00--------------1.00----------------------------------1.00-----
..................................................................................................................................................................................................................................................CCCGATCTCCTTTTTTCCTAG..................................................2114.004.00------------------1.00-1.00---------1.001.00-------------------------------
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAACA..........................................................................................2013.003.00-----------------------------1.00---1.00-------------------1.00---------
....................................TACAATGACTCTCGGCA....................................................................................................................................................................................................................................................................172.000.001.00--------------------------------------1.00-----------------------
........................GGTTGGCATGTCTACAATGAC............................................................................................................................................................................................................................................................................2112.002.00---------------2.00-----------------------------------------------
..............................................................................................................................................................................................................GGAGAAGGGAGTAAACAGG........................................................................................1912.002.002.00--------------------------------------------------------------
..................CAGACTGGTTGGCATGTC.....................................................................................................................................................................................................................................................................................1812.002.00---------2.00-----------------------------------------------------
...................................................................................................................................................................................................................................................CCGATCTCCTTTTTTCCTAG..................................................2012.002.00---1.00-------------------------------1.00---------------------------
..................................................................................................................................................................................................................................................CCCGATCTCCTTTTTTCCTAGC.................................................2211.004.00--------1.00------------------------------------------------------
..................................................................................................................................................AAGGAGAGGTGGAGGTCTCGCC.................................................................................................................................................221.000.00--------------1.00------------------------------------------------
.............................................................................................................................................................................ATTTCCTGGATGCTCTGAGGTTCGGT..................................................................................................................2611.001.00-----------1.00---------------------------------------------------
.......................TGGTTGGCATGTCTACAATA..............................................................................................................................................................................................................................................................................201.000.00---1.00-----------------------------------------------------------
......................................................................................................................................................AGAGGTGGAGGTCTTCAA.................................................................................................................................................181.000.00----------------------------------------1.00----------------------
................................................................................................................................................................................................................................................................................TGTCAGTGAAAACCAGGTGGC....................2111.001.00-----------------------------------------------------------1.00---
................................................................................................................................................................................................................................................................................TGTCAGTGAAAACCAGG........................1711.001.00------------------------------------------------1.00--------------
...............................................................................................................................................................................................................................................TTTCCCGATCTCCTTTTTTC......................................................2011.001.00-------------------1.00-------------------------------------------
......................................................................................................................................AGTGCCAGGTGAAAGGAGGAG..............................................................................................................................................................211.000.00--------------1.00------------------------------------------------
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAACAG.........................................................................................2111.001.00-------------------------------------------------1.00-------------
..............................................................................................................................................................................................................................................................................................AGGTGGCATCCAGCGAGGGCT......2111.001.00---------------------------1.00-----------------------------------
...................................................................................................................................................................................................................................................CCGATCTCCTTTTTTTGT....................................................181.000.00----------------------------------------------------------1.00----
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAAAA..........................................................................................201.000.00---------------------------------------------1.00-----------------
....................................TACAATGACTCTCGGCAAC..................................................................................................................................................................................................................................................................191.000.00------------1.00--------------------------------------------------
...........................................................................................................................................................................................................TAGGGAGAAGGGAGTAAACAGGAT......................................................................................2411.0013.00----------------1.00----------------------------------------------
..........................................................................................................................................................................................................................................................................CTCCCCTGTCAGTGATAA.............................181.000.00-------------------1.00-------------------------------------------
.......................................................................................................................GCTCCAGGAGAGCAGAGGAC..............................................................................................................................................................................201.000.00------------------------------------------1.00--------------------
.........................GTTGGCATGTCTACAATGA.............................................................................................................................................................................................................................................................................1911.001.00--------1.00------------------------------------------------------
..............................................................................................................................................................................................................................................................................................AGGTGGCATCCAGCGAGG.........1811.001.00------------------------1.00--------------------------------------
............................................................................................................................................................................................................AGGGAGAAGGGAGTAAACAGGAA......................................................................................2311.001.00-----------------1.00---------------------------------------------
.........................................................................................................................................................................................CTCTGAGGTTCGGTCTTGAAG...........................................................................................................211.000.00-----------------------------------------------1.00---------------
..........................................................................................................................................................................................................GTAGGGAGAAGGGAGTAAACAG.........................................................................................2211.001.00----------------------------------1.00----------------------------
.................CCAGACTGGTTGGCAT........................................................................................................................................................................................................................................................................................1620.500.50------------------------------------------------------------0.50--

Antisense strand
ACAGCCCTGTGCCGGTGCCAGACTGGTTGGCATGTCTACAATGACTCTCGGTGAGAATAGCCTCCTATTTACATCCTGCCCCATTCCCACTCAGCCCTGACACCCTCCCCTTCTATGAAGCTCCAGGAGAGCAGAGTGCCAGGTGAAAGGAGAGGTGGAGGTCTTGCCTGATCATTTCCTGGATGCTCTGAGGTTCGGTCTTGTAGGGAGAAGGGAGTAAACAGGAATGACCACAACCCTTTCCCGATCTCCTTTTTTCCTAGTGTCTCCCCTGTCAGTGAAAACCAGGTGGCATCCAGCGAGGGCTACGTGC
...........................................................................................................................................................................................................((((((((((((((......((((.............))))....))))))))))))))...................................................
......................................................................................................................................................................................................199.............................................................263................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR191530(GSM715640)
132genomic small RNA (size selected RNA from . (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
....................................................................TTACATCCTGCCCCACCTG.................................................................................................................................................................................................................................. 192.000.00---2.00-----------------------------------------------------------
.......................................................................................CACTCAGCCCTGACACAGA............................................................................................................................................................................................................... 192.000.002.00--------------------------------------------------------------
.............................................................CAGGATGTAAATAGGAG........................................................................................................................................................................................................................................... 1711.001.00-------------------------------------1.00-------------------------
.......TGTGCCGGTGCCAGATTT................................................................................................................................................................................................................................................................................................ 181.000.00---------------------1.00-----------------------------------------
.......................................................................................................................TTTCACCTGGCACTCTGCTCTCCTGGAGC..................................................................................................................................................................... 2911.001.00------------------------------------1.00--------------------------
.......TGTGCCGGTGCCAGAACC................................................................................................................................................................................................................................................................................................ 181.000.00----------------1.00----------------------------------------------
.............................................................................................................................................................GAGGTCTTGCCTGATTAC.......................................................................................................................................... 181.000.00--------------------------------------------------------1.00------
.......................................................................................TGTCAGGGCTGAGTG................................................................................................................................................................................................................... 1501.001.00--------------------------------1.00------------------------------
.............................................................................................................................................................................................................................................CCTTTCCCGATCTCCTCG.......................................................... 181.000.00---------------------------------------------------1.00-----------
............................................................................................................................................................................................................................................................TTTTTTCCTAGTGTCCA............................................ 171.000.00----------------------------------------------1.00----------------
............................................................................................................................................................................................................................................................TTTTTTCCTAGTGTCACC........................................... 181.000.00-------------1.00-------------------------------------------------
.........................................................................................................................................................................................................................................................................................GGATGCCACCTGGTTT................ 1630.330.33-------------------------------------------------------------0.33-
....................................................................................................................................................................GGAAATGATCAGGCA...................................................................................................................................... 1590.110.11--------------------------------------------------------------0.11