ID: uc010pkc.1_intron_5_0_chr1_161132517_f
GENE: (6)
chr1:161132467-161132758+


(1)
AGO1.ip
(1)
AGO3.ip
(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(5)
CELL-LINE
(6)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(25)
SKIN
(1)
UTERUS

Sense strand
CGATTCCGAGCTGTCTTCCAGAAATATGTTCCCTCCTTCTCTGGATACAGGTGGGAGAGCTGGAGGCTATGGGATTTCTCTCTGGCCATGTCTGGGGGTAGGGCCAAGCAAGGGCCCTGGCAGCATTGTTCTGAGCCTTGAGATGTTCTTCATCCAGGAAGTGGGGACCAATATCTGGGCAGGGAATAGTGTCTGTGGACTAGGAGAGGAGTCAGTTGCCCATACTCTTTGTCTGGCTGTAGCCAGCAGGATGCCCAAGAGTTCCTGAAGCTCCTCATGGAGCGGCTACACC
........................................................................(((((((((((......(((((.((.(((((((.......)))))))...((((((((((..((((..(((((((..((.((((.....))))))..)))))))))))..)))))))))))).)))))..)))))))))))...............................................................................
......................................................................71.............................................................................................................................................214............................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189783SRR189785SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...........................................................................TTCTCTCTGGCCATGTGTG......................................................................................................................................................................................................1932.000.0020.008.00-2.00----1.00-------1.00---------------------------------
...........................................................................TTCTCTCTGGCCATGTGTGA.....................................................................................................................................................................................................208.000.005.003.00------------------------------------------------
...........................................................................TTCTCTCTGGCCATGTGT.......................................................................................................................................................................................................185.000.003.00--1.00---------1.00------------------------------------
.........................................................................................................................AGCATTGTTCTGAGCC...........................................................................................................................................................1652.802.80---------------------0.200.400.40-0.200.20-0.200.200.200.200.200.200.20---------------
..........................................................................................................................GCATTGTTCTGAGCC...........................................................................................................................................................1582.502.50------0.25---------------0.12--0.120.120.25-------0.120.120.120.12-0.120.120.12-0.120.120.120.120.120.12
..........................................................................................................................................................................................TAGTGTCTGTGGACTAGGAGAGGA..................................................................................2412.002.00----2.00---------------------------------------------
.........................................................................................................................................................................................................................................................................TGAAGCTCCTCATGGAGCGGCT.....2212.002.00-----2.00--------------------------------------------
...........................................................................TTCTCTCTGGCCATGTGTGT.....................................................................................................................................................................................................202.000.001.001.00------------------------------------------------
...............................................................................................................................................................................................................................ACTCTTTGTCTGGCTGTAGA.................................................201.000.00-----------------1.00--------------------------------
...........................................................................TTCTCTCTGGCCATGTGGG......................................................................................................................................................................................................191.000.001.00-------------------------------------------------
.......................................................................................................................................................................................................................TTGCCCATACTCTTTGTCT..........................................................1911.001.00--------------------1.00-----------------------------
.........................................................................................................................AGCATTGTTCTGAGCCTG.........................................................................................................................................................181.000.00-----------1.00--------------------------------------
........................................CTGGATACAGGTGGGCAC..........................................................................................................................................................................................................................................181.000.00-------1.00------------------------------------------
..........................................................................................................................................................................................................................................................................GAAGCTCCTCATGGAGCGGC......2011.001.00------------1.00-------------------------------------
...........................................................................TTCTCTCTGGCCATGTGCG......................................................................................................................................................................................................191.000.00-1.00------------------------------------------------
............................................................................................................CAAGGGCCCTGGCAGCATTGTTCCG...............................................................................................................................................................251.000.00---------------1.00----------------------------------
...........................................................................TTCTCTCTGGCCATGTGCGT.....................................................................................................................................................................................................201.000.00-1.00------------------------------------------------
................................................................................................................................................................................................................................................................................CCTCATGGAGCGGCTAC...1711.001.00------1.00-------------------------------------------
...................................................TGGGAGAGCTGGAGGCCG...............................................................................................................................................................................................................................181.000.00--------------1.00-----------------------------------
..............................................................................................................................................................................................................................TACTCTTTGTCTGGCTGA....................................................181.000.00---------1.00----------------------------------------
..................................................................................................................................................................................................................................CTTTGTCTGGCTGTAG..................................................1630.330.33------------------------0.33-------------------------
.................................................................................................................................................................................................................................TCTTTGTCTGGCTGTAG..................................................1730.330.33---------------------0.33----------------------------
..........................................................................................................................GCATTGTTCTGAGCCCG.........................................................................................................................................................1780.252.50----0.12----------------------------------0.12----------
..........................................................................................................................GCATTGTTCTGAGCCGG.........................................................................................................................................................1780.122.50-------------------------------------------0.12------

Antisense strand
CGATTCCGAGCTGTCTTCCAGAAATATGTTCCCTCCTTCTCTGGATACAGGTGGGAGAGCTGGAGGCTATGGGATTTCTCTCTGGCCATGTCTGGGGGTAGGGCCAAGCAAGGGCCCTGGCAGCATTGTTCTGAGCCTTGAGATGTTCTTCATCCAGGAAGTGGGGACCAATATCTGGGCAGGGAATAGTGTCTGTGGACTAGGAGAGGAGTCAGTTGCCCATACTCTTTGTCTGGCTGTAGCCAGCAGGATGCCCAAGAGTTCCTGAAGCTCCTCATGGAGCGGCTACACC
........................................................................(((((((((((......(((((.((.(((((((.......)))))))...((((((((((..((((..(((((((..((.((((.....))))))..)))))))))))..)))))))))))).)))))..)))))))))))...............................................................................
......................................................................71.............................................................................................................................................214............................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189783SRR189785SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
........................................................GAGCTGGAGGCTATGGC........................................................................................................................................................................................................................... 173.000.00--3.00-----------------------------------------------
.............................................................................................................................................................................................................................................................CCCAAGAGTTCCTGAAAGGG................... 201.000.00----------1.00---------------------------------------
.AGACAGCTCGGAATC.................................................................................................................................................................................................................................................................................... 1511.001.00------------------1.00-------------------------------
.......GAGCTGTCTTCCAGAAATATT........................................................................................................................................................................................................................................................................ 211.000.00-------------------1.00------------------------------