ID: uc010pjx.1_intron_1_0_chr1_161007866_r
GENE: (2)
chr1:161007816-161008390-


(1)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(19)
CELL-LINE 		(7)
CERVIX 		(2)
FIBROBLAST 		(2)
HEART 		(6)
LIVER 		(6)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCGCGAGGAGGCGGCAGCTGGGACCATCCCAGGGGCGCTCAACATCCCGGGTATAGGGTGGAGAGGGGACGCCCAGGTGGTGGAATAGAGACCGTTCAGGAGGTTCTTTGCCAATGGGACCTCATTTAGGATGGAATGGGGAAGGCACTGATTATGGGGGTCCTGCATTCCCGGGAGCCAGCCCTCAGCTTCCGTAGGAAGGACTGATGGGGGGCGGATCTTGGCATCGGAACTGGCCCATCCAGTTTGAGAAGACAGCAGGCGGAGAGGAGAGGGGCAGACCAGCTTCTCTTGACCTCCCCAAATCTGGACGCCTGAGGGGGCATCCCGCCCCGCCTCCTCACAGCTTAGGGAGTGGCTTGCATTCAAAAGTTGTCGGTTTCTGTTCCTTGAAATTGGGGTGGGGGTAGGGGATGGTTATCATATGTTGTTTGGGGGCCCCCAGGACCCAGCCCTTCCAGGCCCAGCTTCCGAACCTGAGTGCCAAATTGCTGGCTTTCCCTTCTACCCTCTCCACTCCTCCAGTGTCCGAGTTGGAGAGTGCTCTGCAGATGGAGCCAGCTGCCTTCCAGGCT
.................................................................((..(((((...((((..........((((((..((((((((........)))))))).....))))))....(((((.(((..((((.....)))).))).)))))....)))).((((((((((((...)))))..)))).))))))))..))...................................................................................................................................................................................................................................................................................................................................................................
.................................................................66.........................................................................................................................................................221................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189784SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR189787SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAGTTGGAGAGTGCTCTG...........................2419.009.00-9.00--------------------------------------------------------------------------------
......................................................................GCCCAGGTGGTGGAATTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1937.334.33---2.00--------------1.671.67----------------------------------------0.33---------0.33-0.33--0.330.33-0.33---
......................................................................GCCCAGGTGGTGGAATTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2034.674.33---3.33----0.33-----------------------------------------------------------0.330.33---0.33--------
......................................................................GCCCAGGTGGTGGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1634.334.33---0.67---0.67---------------0.33-0.33-----------1.00----------------------0.330.67---------------0.33----
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTGGAGAGTGCTCTGCAGATGGA...................2712.002.00-----2.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAGTTGGAGAGTGCTCTGC..........................2312.002.00----------1.00-------------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCCGAGTTGGAGAGTGCTCTGCAGATGG....................3212.002.00------2.00---------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAGAGTGCTCTGCAGATGG....................2512.002.00--1.00---------------------------------------------------1.00---------------------------
......................................................................GCCCAGGTGGTGGAAGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------1.00-------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTGGAGAGTGCTCTGCAGATGGAGCCAGCTGC..........3611.001.00---------------1.00------------------------------------------------------------------
......................................................................................................................................................................................................................................AACTGGCCCATCCAGTTTGAGAAGACAGC............................................................................................................................................................................................................................................................................................................................2911.001.001.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................AAGGACTGATGGGGGTGAC......................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------1.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTGGAGAGTGCTCTGCAGATGG....................2611.001.00--------------------------------------------1.00-------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGGGTGGGGGTAGGGGACGG..............................................................................................................................................................251.000.001.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTGGGGGTAGGGGATGGTTACC.........................................................................................................................................................281.000.001.00---------------------------------------------------------------------------------
..............................................CCGGGTATAGGGTGGAGAGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------1.00-----------------------------------------------------------------------
.................................................................................................................................................................................................................GGGGGCGGATCTTGGTGGT...........................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCTGCAGATGGAGCCAGCTGC..........2711.001.00--------------------------1.00-------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAGAGTGCTCTGCAGATGGAGCCA...............3011.001.00--1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................ATCCAGTTTGAGAAGAC...............................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------------------------------------1.00----------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGCTCTGCAGATGGAGCCAGCTGCC.........2911.001.00------------------------------1.00---------------------------------------------------
........AGGCGGCAGCTGGGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------1.00------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAACCTGAGTGCCAAATTGCT..................................................................................2411.001.00--1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTTGGAGAGTGCTCTGC..........................2111.001.00---------------------------------1.00------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTTATCATATGTTTCTG..............................................................................................................................................211.000.00--1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGCTCTGCAGATGG....................1811.001.00-------------1.00--------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGGGTGGGGGTAGGGGACGGT.............................................................................................................................................................261.000.001.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGAGTGCTCTGCAGATGG....................2211.001.00--1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCAGATGGAGCCAGCTGC..........2311.001.00---------------------------------------1.00------------------------------------------
................................................................................................................................................................................................................................................................................AGGGGCAGACCAGCTGCT.............................................................................................................................................................................................................................................................................................181.000.001.00---------------------------------------------------------------------------------
.................................................................................................................................GATGGAATGGGGAAGGCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--1.00-------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTGGAGAGTGCTCTGCAGATGGAG..................2811.001.00-------------------------------------------------1.00--------------------------------
................................................................................TGGAATAGAGACCGTTCAGGAGGTTCTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00-----------------------------------------------------------1.00----------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGTGCTCTGCAGATGGAGCCAGCTGG..........301.000.00----1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................AAGGACTGATGGGGGGCGGACC...................................................................................................................................................................................................................................................................................................................................................................221.000.001.00---------------------------------------------------------------------------------
........................................................................................................................................TGGGGAAGGCACTGATTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------1.00----------------------------------
.....................................................................CGCCCAGGTGGTGGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-------------------------1.00--------------------------------------------------------
................................................................................................................................................................................................CGTAGGAAGGACTGATGGG............................................................................................................................................................................................................................................................................................................................................................................1911.001.00------1.00---------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGGAGCCAGCTGCCTTCCAGGC.3011.001.00--------------1.00-------------------------------------------------------------------
.................................................................................................................................GATGGAATGGGGAAGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00---------------------------------
.....................................................................................................................................................................................................GAAGGACTGATGGGGGAGTC......................................................................................................................................................................................................................................................................................................................................................................201.000.00---------1.00------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTTGGAGAGTGCTCT............................1911.001.00--------------------------------1.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAGTTGGAGAGTGCT..............................1911.001.00----------------------------------------1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGTTGGAGAGTGCTCTGCAGA.......................2511.001.00-----1.00----------------------------------------------------------------------------
.......................................................................................................................................ATGGGGAAGGCACTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGCTCTGCAGATGGA...................2011.001.00--------------------------------------------------------1.00-------------------------
.............................................................................................................................................................................................TTCCGTAGGAAGGACTGA................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------1.00----------------------------------------------------------------
................................................................GGGGACGCCCAGGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-----1.00----------------------------------------------------------------------------
..........GCGGCAGCTGGGACCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------1.00--------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTCTCCACTCCTCCAGTGTCCGAGCTGG......................................311.000.00-------1.00--------------------------------------------------------------------------
.....................................................................................................................................................................................................GAAGGACTGATGGGGGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................2111.001.00--1.00-------------------------------------------------------------------------------
...........................................................................................................................ATTTAGGATGGAATGGGGAAGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00-----------------------------------------------------------------------------
............................................................................................................................................GAAGGCACTGATTATTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00--------------------------
...CGAGGAGGCGGCAGCTGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00----------------1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................................TCTTGGCATCGGAACTGGC..................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------1.00----------------------------------------------------------------
...........................................................................................................................ATTTAGGATGGAATGGGGAAGGCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--1.00-------------------------------------------------------------------------------
.....................GACCATCCCAGGGGCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------1.00--------------------------------------------------------------------
...................GGGACCATCCCAGGGGCGCTCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00-----------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAGAGTGCTCTGCAGATGGAGCC................2911.001.00----1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................TTAGGGAGTGGCTTGCATGTTT..............................................................................................................................................................................................................221.000.00-----------------------------1.00----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGTAGGGGATGGTTAAGTT.......................................................................................................................................................221.000.00---------1.00------------------------------------------------------------------------
............................................................................................................................................................................................CTTCCGTAGGAAGGACTGATGGG............................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------1.00------------------------------------------------------------
......GGAGGCGGCAGCTGGGACCATCCCAGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00------1.00---------------------------------------------------------------------------
......................................................................................................................................AATGGGGAAGGCACTGGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------------------1.00--------------------------------------
....................................................................................................................................................................................................................................................................GGCGGAGAGGAGAGGGGCA........................................................................................................................................................................................................................................................................................................1911.001.00-----1.00----------------------------------------------------------------------------
.......................................................................................................................................................................................................AGGACTGATGGGGGGCGGATCTT.................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------1.00-------------------------------
..............................................................................................................................TAGGATGGAATGGGGAAGGCACTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--------------1.00-------------------------------------------------------------------
.......................CCATCCCAGGGGCGCTCAACATCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------1.00------------------------------------------------------
......................................................................GCCCAGGTGGTGGAATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.674.33---0.67------------------------------------------------------------------------------
..............................................................................................................................TAGGATGGAATGGGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50----------------------0.50-----------------------------------------------------------
...................................................TATAGGGTGGAGAGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50--------------------0.50-------------------------------------------------------------
....................................................................................................................................................................................................GGAAGGACTGATGGGGG..........................................................................................................................................................................................................................................................................................................................................................................1720.500.50---------------------0.50------------------------------------------------------------
.....................................................................................................................................GAATGGGGAAGGCACTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50----------------------------------------------------------------0.50-----------------
........AGGCGGCAGCTGGGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50---------------------------------------------------------------0.50------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGCTCTGCAGATG.....................1720.500.50-----------------------------------------------------------------0.50----------------
............................................................................................................................................................................................................................................................................GGAGAGGGGCAGACCAG..................................................................................................................................................................................................................................................................................................1730.330.33-------------------------------------------------------------------------------0.33--
......................................................................GCCCAGGTGGTGGAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.334.33--------------------------------------------------------------------------0.33-------
........................CATCCCAGGGGCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1540.250.25--------------------------0.25-------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCACTCCTCCAG..................................................1640.250.25---0.25------------------------------------------------------------------------------
...................................................................................................................................................................................................AGGAAGGACTGATGGG............................................................................................................................................................................................................................................................................................................................................................................1650.200.20-------------------------------------------------------------------0.20--------------
.............................................................................................................................................AAGGCACTGATTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1560.170.17-------------------------------------------------------------------0.17--------------
....................................................................................................................................................................................................GGAAGGACTGATGGGG...........................................................................................................................................................................................................................................................................................................................................................................1660.170.17---------------------------------------------------------------------------------0.17
.......................................................................CCCAGGTGGTGGAATGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.140.14---0.14------------------------------------------------------------------------------
.......................................................................CCCAGGTGGTGGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.140.14---0.14------------------------------------------------------------------------------

Antisense strand
TCGCGAGGAGGCGGCAGCTGGGACCATCCCAGGGGCGCTCAACATCCCGGGTATAGGGTGGAGAGGGGACGCCCAGGTGGTGGAATAGAGACCGTTCAGGAGGTTCTTTGCCAATGGGACCTCATTTAGGATGGAATGGGGAAGGCACTGATTATGGGGGTCCTGCATTCCCGGGAGCCAGCCCTCAGCTTCCGTAGGAAGGACTGATGGGGGGCGGATCTTGGCATCGGAACTGGCCCATCCAGTTTGAGAAGACAGCAGGCGGAGAGGAGAGGGGCAGACCAGCTTCTCTTGACCTCCCCAAATCTGGACGCCTGAGGGGGCATCCCGCCCCGCCTCCTCACAGCTTAGGGAGTGGCTTGCATTCAAAAGTTGTCGGTTTCTGTTCCTTGAAATTGGGGTGGGGGTAGGGGATGGTTATCATATGTTGTTTGGGGGCCCCCAGGACCCAGCCCTTCCAGGCCCAGCTTCCGAACCTGAGTGCCAAATTGCTGGCTTTCCCTTCTACCCTCTCCACTCCTCCAGTGTCCGAGTTGGAGAGTGCTCTGCAGATGGAGCCAGCTGCCTTCCAGGCT
.................................................................((..(((((...((((..........((((((..((((((((........)))))))).....))))))....(((((.(((..((((.....)))).))).)))))....)))).((((((((((((...)))))..)))).))))))))..))...................................................................................................................................................................................................................................................................................................................................................................
.................................................................66.........................................................................................................................................................221................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189784SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR189787SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACTCCTCCAGTGTGGC............................................ 203.000.003.00---------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................AGGTCAAGAGAAGCTGGT..................................................................................................................................................................................................................................................................................... 1812.002.00-----------2.00----------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACTCGGACACTGGAGGAG...................................... 2111.001.00----------------------1.00-----------------------------------------------------------
.............................................................................................................................................................CCCGGGAATGCAGGACCC................................................................................................................................................................................................................................................................................................................................................................................................................ 1811.001.00------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCTCCACTCCTCCACTGT............................................... 211.000.00----------------------------------------------1.00-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACTCCTCCAGTGTGGCA........................................... 211.000.00-------1.00--------------------------------------------------------------------------
......GGAGGCGGCAGCTGGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 171.000.00--------1.00-------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCCCTTCTACCCTGC.............................................................. 191.000.00--1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGCTGGGCCTGG..................................................................................................... 1731.001.00------------------------0.33-------------------------------------0.67-------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCCTTCCAGCG. 181.000.00------------------------------------1.00---------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACCCAGCCCTTTGGG.................................................................................................................. 191.000.00------------1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCAACTCGGACACTG.................................. 1911.001.00-----------------------------------------1.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................CCCCGCCTCCTCACAAGAC.................................................................................................................................................................................................................................. 191.000.00----1.00-----------------------------------------------------------------------------
............................................................................................AAAGAACCTCCTGAACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1711.001.00----------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCAGCCCTTCCAGGTC............................................................................................................... 191.000.00------------------------------------------1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTCGGAAGCTGGGC................................................................................................ 1811.001.00---------------1.00------------------------------------------------------------------
............................................................................................................................................................................................................................................................................GGAGAGGGGCAGACCAGG................................................................................................................................................................................................................................................................................................. 181.000.00----------------------------------------------------------1.00-----------------------
............................................................................................................................................................................................................................................................................GGAGAGGGGCAGACCG................................................................................................................................................................................................................................................................................................... 161.000.00--------------------1.00-------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTGGGGGTAACTC.................................................................................................................................................................. 191.000.00-----------------------1.00----------------------------------------------------------
.................................................................................................................................................................................CTTCCTACGGAAGCTGAGGGCTGG...................................................................................................................................................................................................................................................................................................................................................................................... 2411.001.00---------------------------------------------1.00------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTGGGGGTAATTC.................................................................................................................................................................. 191.000.00---1.00------------------------------------------------------------------------------
..............................................................................................................................................................GGTCCTGCATTCCCGGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00----------------------------1.00-----------------------------------------------------
.........................................................................................................................................................................AAGCTGAGGGCTGGCTCCCGGG................................................................................................................................................................................................................................................................................................................................................................................................ 2211.001.00---------------------------------------------------1.00------------------------------
.................................................................................................................................................................................ACGGAAGCTGAGGGCTGG............................................................................................................................................................................................................................................................................................................................................................................................ 1820.500.50------------------------------------------------------------------0.50---------------
..................................................................................................................................................................................ACGGAAGCTGAGGGCTG............................................................................................................................................................................................................................................................................................................................................................................................ 1730.330.33-----------------------------------------------------------------------0.33----------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGCTGGGCCTGG...................................................................................................... 1650.200.20--------------------------------------------------------------------------------0.20-