ID: uc010pjc.1_intron_12_0_chr1_160247982_r.3p
GENE: DCAF8(5)
chr1:160247932-160248181-


(4)
B-CELL 		(4)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
KIDNEY 		(8)
LIVER 		(5)
OTHER 		(1)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGGTTCCATCAACACCCACCTTCCACAACTCAGTCTGCACCTCAGTTGGCAAAGGAGACTGGATGGCCATCTTTCCTCATGTTCCCTTGAGTATTTCAATGTAGAAAGCCCTTCAAGTGGTATTATATTTTAACCTTTTACATTATTGTTATTAATGTTAGTAATATATTGTTATGTTTTCTAAATTATTTTTCTTTAAGCTGACGTGGCTTTTTTTCTGTGGCTCCCAGTGGGTCTACGGACCTTGGCT
....................................................((((((.(((....)))..))))))......((((((((..((((......))))....)))))).))..................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR343336SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
...................................................AAGGAGACTGGATGGCCATCT..................................................................................................................................................................................2118.008.003.003.001.00--------1.00---------------------------------
....................................................................................................GTAGAAAGCCCTTCAAGTG...................................................................................................................................1915.005.00---5.00-----------------------------------------
....................................................AGGAGACTGGATGGCCATC...................................................................................................................................................................................1914.004.00---------2.00------------------------------1.00--1.00-
.........................................................................................................................ATTATATTTTAACCTTTTACATTATTG......................................................................................................2714.004.00----3.00--1.00-------------------------------------
...................................................AAGGAGACTGGATGGCCAT....................................................................................................................................................................................1914.004.00--4.00------------------------------------------
..................................................................................................................................TAACCTTTTACATTACAG......................................................................................................184.000.00--------3.00----------------1.00-------------------
........................................................................................................................TATTATATTTTAACCTTTTACATTATTG......................................................................................................2814.004.00----1.00----------------1.00----------------1.00---1.00--
...................................................AAGGAGACTGGATGGCCATA...................................................................................................................................................................................2013.004.001.001.00----------1.00--------------------------------
.....................................................GGAGACTGGATGGCCATCT..................................................................................................................................................................................1912.002.00-2.00-------------------------------------------
....................................................................................................GTAGAAAGCCCTTCAAGTGGTATT..............................................................................................................................2412.002.00-----2.00---------------------------------------
......................................................................................................................................................................................................AGCTGACGTGGCTTTTTTTCT...............................2112.002.001.001.00-------------------------------------------
...................................................AAGGAGACTGGATGGCCATC...................................................................................................................................................................................2012.002.00-1.00-------------------------------------1.00-----
......................................................................................TTGAGTATTTCAATGTAGAAAGC.............................................................................................................................................2312.002.00-----1.00-----------------1.00---------------------
...................................................AAGGAGACTGGATGGCCATTT..................................................................................................................................................................................2112.004.001.001.00-------------------------------------------
..................................................AAAGGAGACTGGATGGCCATA...................................................................................................................................................................................2112.001.00-2.00-------------------------------------------
...........................................................................................................................................................................TTATGTTTTCTAAATTATTTTTCTTTAAG..................................................2912.002.00----------2.00----------------------------------
..................................................AAAGGAGACTGGATGGCCATCTTT................................................................................................................................................................................2411.001.00-----------------1.00---------------------------
........................................................................................................................TATTATATTTTAACCTTTTACATTACTG......................................................................................................281.000.00-------1.00-------------------------------------
....................................................AGGAGACTGGATGGCCATCTTT................................................................................................................................................................................2211.001.001.00--------------------------------------------
...................................................AAGGAGACTGGATGGCCATCTTT................................................................................................................................................................................2311.001.00--------------1.00------------------------------
.....................................................................TCTTTCCTCATGTTCAAAT..................................................................................................................................................................191.000.00-------------------1.00-------------------------
...................................................AAGGAGACTGGATGGCCATT...................................................................................................................................................................................2011.004.00-1.00-------------------------------------------
.....................................................GGAGACTGGATGGCCATCTTTCC..............................................................................................................................................................................2311.001.00-----------------------------------------1.00---
...................................TGCACCTCAGTTGGCAAAGGAGACT..............................................................................................................................................................................................2511.001.00----------------------1.00----------------------
...........................................................................................................................................................................................ATTTTTCTTTAAGCTGACGTGGCTTTTTCTG................................311.000.00---------------------------------1.00-----------
...................................................AAGGAGACTGGATGGCCATCTT.................................................................................................................................................................................2211.001.00-1.00-------------------------------------------
.............................................................................................TTTCAATGTAGAAAGCCCTTCAAGTG...................................................................................................................................2611.001.00------------------------------------1.00--------
.........................................TCAGTTGGCAAAGGAGACTGGATGGCCATC...................................................................................................................................................................................3011.001.00------1.00--------------------------------------
.................................................................................................AATGTAGAAAGCCCTTCAAGTGGTATT..............................................................................................................................2711.001.00-------------------------------------1.00-------
.................ACCTTCCACAACTCAGTCTGCACC.................................................................................................................................................................................................................2411.001.001.00--------------------------------------------
.................................................CAAAGGAGACTGGATGGC.......................................................................................................................................................................................1811.001.00-----1.00---------------------------------------
..................................................AAAGGAGACTGGATGGCCA.....................................................................................................................................................................................1911.001.00-----------1.00---------------------------------
........................................................................................................................................................................................................................................GGTCTACGGACCTTGGATC191.000.00---------------1.00-----------------------------
..................................................AAAGGAGACTGGATGGCCATTTTT................................................................................................................................................................................2411.001.00-----------------1.00---------------------------
.......................................................AGACTGGATGGCCATCTTTCCTC............................................................................................................................................................................2311.001.001.00--------------------------------------------
......................................................................................................................................................................................................AGCTGACGTGGCTTTTTTTC................................2011.001.001.00--------------------------------------------
....................................................AGGAGACTGGATGGCCATCT..................................................................................................................................................................................2011.001.00------------1.00--------------------------------
..................................................................................................ATGTAGAAAGCCCTTCAAG.....................................................................................................................................1911.001.00-----------------------------1.00---------------
.........................................TCAGTTGGCAAAGGAGACTGGATGGC.......................................................................................................................................................................................2611.001.00------1.00--------------------------------------
.......................................................AGACTGGATGGCCATTAG.................................................................................................................................................................................181.000.00-------------------------------1.00-------------
....................................................................................................................................................................................CTAAATTATTTTTCTTTG....................................................181.000.00-------1.00-------------------------------------
..................................................AAAGGAGACTGGATGGCCAT....................................................................................................................................................................................2011.001.00--1.00------------------------------------------
.....................................................GGAGACTGGATGGCCG.....................................................................................................................................................................................161.000.00--------------------------1.00------------------
.................................................CAAAGGAGACTGGATGGCCATCTTTCC..............................................................................................................................................................................2711.001.001.00--------------------------------------------
...........................................................TGGATGGCCATCTTTCCTCATGTTCCC....................................................................................................................................................................2711.001.001.00--------------------------------------------
..............................................................................................TTCAATGTAGAAAGCCCTTCAAGTGGTATT..............................................................................................................................3011.001.00------1.00--------------------------------------
...................................................................................................................AGTGGTATTATATTTTATATT..................................................................................................................211.000.00-----------------------------------1.00---------
.....................................................GGAGACTGGATGGCCATCTTT................................................................................................................................................................................2111.001.00------------------1.00--------------------------
............................................GTTGGCAAAGGAGACTGTTA..........................................................................................................................................................................................201.000.00----------------------------------1.00----------
........................................................................................................................................................................................................................................GGTCTACGGACCTTGGAT181.000.00---------------1.00-----------------------------
......................................................GAGACTGGATGGCCATCTTT................................................................................................................................................................................2011.001.00--------------------1.00------------------------
.................................................................................................AATGTAGAAAGCCCTTCAAGTGGTAT...............................................................................................................................2611.001.00---------------------------1.00-----------------
..............................................................................................................................................................................................................TGGCTTTTTTTCTGTGGCT.........................1911.001.00------------------------------1.00--------------
..............................................................................................................................................................................................TTTCTTTAAGCTGACGTGGCTTTTTTT.................................2711.001.00------------------------1.00--------------------
.GGTTCCATCAACACCCACCTTCCACCGGG............................................................................................................................................................................................................................291.000.001.00--------------------------------------------
....................................................AGGAGACTGGATGGCCATCCCTC...............................................................................................................................................................................2311.004.00----------------1.00----------------------------
...................................................AAGGAGACTGGATGGCCAAAA..................................................................................................................................................................................211.000.00--------------------------------1.00------------
.......................................................AGACTGGATGGCCATCTTTCCTCA...........................................................................................................................................................................2411.001.001.00--------------------------------------------
....................................................AGGAGACTGGATGGCCATGTTT................................................................................................................................................................................2220.500.500.50--------------------------------------------
....................................................AGGAGACTGGATGGCCA.....................................................................................................................................................................................1720.500.50--------------------------------------------0.50
....................................................AGGAGACTGGATGGCCAT....................................................................................................................................................................................1820.500.50------------------0.50--------------------------
....................................................AGGAGACTGGATGGCCATA...................................................................................................................................................................................1920.500.50---------0.50-----------------------------------
..............................................................................................................................................................................................................TGGCTTTTTTTCTGTGG...........................1730.330.33------0.33--------------------------------------
....................................................................................................................................................................................CTAAATTATTTTTCTTTA....................................................1850.200.20----0.20----------------------------------------
..........................................................................................................................TTATATTTTAACCTTTT...............................................................................................................1760.170.17----------0.17----------------------------------

Antisense strand
GGGTTCCATCAACACCCACCTTCCACAACTCAGTCTGCACCTCAGTTGGCAAAGGAGACTGGATGGCCATCTTTCCTCATGTTCCCTTGAGTATTTCAATGTAGAAAGCCCTTCAAGTGGTATTATATTTTAACCTTTTACATTATTGTTATTAATGTTAGTAATATATTGTTATGTTTTCTAAATTATTTTTCTTTAAGCTGACGTGGCTTTTTTTCTGTGGCTCCCAGTGGGTCTACGGACCTTGGCT
....................................................((((((.(((....)))..))))))......((((((((..((((......))))....)))))).))..................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR343336SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
...........ACACCCACCTTCCACAATAG........................................................................................................................................................................................................................... 201.000.00-------------1.00-------------------------------
............................CTCAGTCTGCACCTCACCT........................................................................................................................................................................................................... 191.000.00----------------1.00----------------------------
.......................................................................................................................................TTTTACATTATTGTTATACA............................................................................................... 201.000.00----------------------------1.00----------------
.........CAACACCCACCTTCCATGG.............................................................................................................................................................................................................................. 191.000.00--------------1.00------------------------------
...........ACACCCACCTTCCACAGT............................................................................................................................................................................................................................. 181.000.00-------------1.00-------------------------------