ID: uc010pht.1_intron_9_0_chr1_156814636_r
GENE: (12)
chr1:156814586-156814917-


(1)
AGO2.ip
(2)
BRAIN
(7)
BREAST
(5)
CELL-LINE
(16)
CERVIX
(2)
FIBROBLAST
(4)
HEART
(1)
KIDNEY
(3)
LIVER
(2)
OTHER
(17)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
CGTGGGCTGCAGCGCCGCCACCTTCGTCTTTGCGCGCACCATGCCCCACAGTAGGTGATCCACACACACACCTTCTACCCCCATCACCGACCCCAAGGACCCTGTGCAAAGGTTTGGGGTTTGACTTCTCGCTAACCCCAGAGCCTCGCTTTGCTTGCCCCTCTCAGTTCCCATAATCCCAAAGCTTTCCCCACCTCCCAGCTCAGCCCAGTTTAGCTTGGGTTTGAACATAAGGTGAGATGAACCACTTTTGGCCCGGCTGCTGGATGCCCCTTCCCGCAGGAGAGGCTGATGGTATTCCAGGAAAGGTGGCCTGGGAGGCCTCCAGCAAG
....................................................(((((...........))))).......((.(((((........((((((.(((.((((.(((((((((.((((............((((((...))))))............)))).....))))))))).))))...))).....((((.(((...))).)))).))))))........)))))......(((....)))...)).........................................................................
..................................................51..............................................................................................................................................................................................................259.......................................................................
SizePerfect hitTotal NormPerfect NormSRR040024(GSM532909)
G613N. (cervix)
SRR189784SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
GSM532879(GSM532879)
G659N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
TAX577579(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040030(GSM532915)
G013N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR040033(GSM532918)
G603T. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
GSM532872(GSM532872)
G652T. (cervix)
SRR189785DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAGCT.............................................................................2026.000.003.00--2.001.002.00---1.00-1.001.00--1.001.00----1.001.00--1.00-1.00-1.00--1.001.00--1.00-1.001.001.00----1.00-1.00-----------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAGC..............................................................................194.000.00--------1.00--------1.00--1.00----------------------------------1.00---------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTAGCT..............................................................................193.000.00----2.00------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTACCT.............................................................................202.000.00-------------1.00----------------------------1.00----------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTCGCT.............................................................................202.000.001.00------------------------------------1.00---------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTATCT.............................................................................202.000.00---1.00--1.00----------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAGCC.............................................................................202.000.00---------1.00----1.00--------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTACC..............................................................................191.000.001.00----------------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTCTCT.............................................................................201.000.00----------------------------1.00------------------------------------
..........................................................TCCACACACACACCTCACG...............................................................................................................................................................................................................................................................191.000.00--------------------------------------------1.00--------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTACAA.............................................................................201.000.00-----------1.00-----------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTAACT..............................................................................191.000.00------1.00----------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTCG...............................................................................181.000.00--------------1.00--------------------------------------------------
..............................................................................................................................................................................................................................................GATGAACCACTTTTGCTCC...........................................................................191.000.00-----1.00-----------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTCAA..............................................................................191.000.00-------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAT...............................................................................181.000.00----------------------------------------------1.00------------------
.............................................................................................................................................................................................................................................................................CCCCTTCCCGCAGGAGAGGCTGATGG.....................................2611.001.00------------------------------1.00----------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTTC...............................................................................181.000.00-----------------------1.00-----------------------------------------
..........................................................................................................CAAAGGTTTGGGGTTACTG...............................................................................................................................................................................................................191.000.00-----------------------------------------------------1.00-----------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTAAA...............................................................................181.000.00-------1.00---------------------------------------------------------
.........................................................................................................................................CCAGAGCCTCGCTTTGCTTGCCCCTCT........................................................................................................................................................................2711.001.00-----------------------------------1.00-----------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAGAT.............................................................................201.000.00------1.00----------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTCAC..............................................................................191.000.00-------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTTGCTT............................................................................211.000.00--------------------------------------------------1.00--------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTTGCTA............................................................................211.000.00-------------1.00---------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAGCA.............................................................................201.000.00------------------------------------------------1.00----------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTGATA..............................................................................191.000.00------------1.00----------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTGACA..............................................................................191.000.00-----------------------------------------------------------1.00-----
.....GCTGCAGCGCCGCCACCGGTA..................................................................................................................................................................................................................................................................................................................211.000.00-1.00---------------------------------------------------------------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTAACC.............................................................................201.000.00-------------------1.00---------------------------------------------
..........................................................................................................................................................................................................................................GTGAGATGAACCACTGTAG...............................................................................191.000.00----------------------------------------------------------1.00------
...........................................................................................................................................................................................................................................TGAGATGAACCACTTTTGCGC............................................................................211.000.001.00----------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................TCCAGGAAAGGTGGCCTCTT..............201.000.00----------------------------------------------------1.00------------
...............................................................................................................................................................................................................................................................CCGGCTGCTGGATGC..............................................................1570.290.29-------------------------------------------------------------0.29---

Antisense strand
CGTGGGCTGCAGCGCCGCCACCTTCGTCTTTGCGCGCACCATGCCCCACAGTAGGTGATCCACACACACACCTTCTACCCCCATCACCGACCCCAAGGACCCTGTGCAAAGGTTTGGGGTTTGACTTCTCGCTAACCCCAGAGCCTCGCTTTGCTTGCCCCTCTCAGTTCCCATAATCCCAAAGCTTTCCCCACCTCCCAGCTCAGCCCAGTTTAGCTTGGGTTTGAACATAAGGTGAGATGAACCACTTTTGGCCCGGCTGCTGGATGCCCCTTCCCGCAGGAGAGGCTGATGGTATTCCAGGAAAGGTGGCCTGGGAGGCCTCCAGCAAG
....................................................(((((...........))))).......((.(((((........((((((.(((.((((.(((((((((.((((............((((((...))))))............)))).....))))))))).))))...))).....((((.(((...))).)))).))))))........)))))......(((....)))...)).........................................................................
..................................................51..............................................................................................................................................................................................................259.......................................................................
SizePerfect hitTotal NormPerfect NormSRR040024(GSM532909)
G613N. (cervix)
SRR189784SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
GSM532879(GSM532879)
G659N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
TAX577579(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040030(GSM532915)
G013N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR040033(GSM532918)
G603T. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
GSM532872(GSM532872)
G652T. (cervix)
SRR189785DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
....................................CACCATGCCCCACAGTGGA..................................................................................................................................................................................................................................................................................... 191.000.00--1.00--------------------------------------------------------------
.........................................................ATCCACACACACACCAGTG................................................................................................................................................................................................................................................................ 191.000.00----------------------------------1.00------------------------------
..............................................................................................................................................ATGGGAACTGAGAGGGGCAAGCAAAGCGAGGC.............................................................................................................................................................. 3211.001.00--1.00--------------------------------------------------------------
............................................................................................................................................................................................CCCCACCTCCCAGCTCATGG............................................................................................................................ 201.000.00--------------------------1.00--------------------------------------
.....................................................................................................................................................................AGTTCCCATAATCCCACTG.................................................................................................................................................... 191.000.00-------------------------------------------------1.00---------------
..............................................................................................................................................GGGGCAAGCAAAGCGAGGC........................................................................................................................................................................... 1911.001.00---------------------------------------------------1.00-------------
...............................................................................................................................CTCGCTAACCCCAGACTGT.......................................................................................................................................................................................... 191.000.00-------------------------------------------1.00---------------------
.....................................................................................................................................................................AGTTCCCATAATCCCCTG..................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------
..............................................................................GGGGTCGGTGATGGGG.............................................................................................................................................................................................................................................. 1621.001.00------------------------1.00----------------------------------------
....................................................................................................................................................CTTTGCTTGCCCCTCAGGG..................................................................................................................................................................... 191.000.00-1.00---------------------------------------------------------------
................................................................................................................................................CTCGCTTTGCTTGCCCGAT......................................................................................................................................................................... 191.000.00---------------------------------------------------------1.00-------
..............................................................................................................................................GGCAAGCAAAGCGAGGC............................................................................................................................................................................. 1711.001.00--------------------------------------------------------1.00--------
..............................................................CACACACACCTTCTACAT............................................................................................................................................................................................................................................................ 181.000.00------------------------------------------------------1.00----------
..................................................................................................................................................................................................CTCCCAGCTCAGCCCAGACGC..................................................................................................................... 211.000.00------------------1.00----------------------------------------------
......................................................................................................................................................................................................CAGCTCAGCCCAGTTAAGT................................................................................................................... 191.000.00--------1.00--------------------------------------------------------
....................................................................................................................................................CTTTGCTTGCCCCTCATGG..................................................................................................................................................................... 191.000.00-1.00---------------------------------------------------------------
...................................................................CCTTGGGGTCGGTGATGGGGGTAGAAGGTGT.......................................................................................................................................................................................................................................... 3111.001.00--1.00--------------------------------------------------------------
....................................................................................................................................................CTTTGCTTGCCCCTCATTG..................................................................................................................................................................... 191.000.00-1.00---------------------------------------------------------------
......................................................................................................................................................................................................CAGCTCAGCCCAGTTCTCG................................................................................................................... 191.000.00----------1.00------------------------------------------------------
...................................................................ACACCTTCTACCCCCATAG...................................................................................................................................................................................................................................................... 191.000.00----------1.00------------------------------------------------------
..............................................................................................................................................GAGAGGGGCAAGCAAAGCGAGGC....................................................................................................................................................................... 2311.001.00-------------------------------1.00---------------------------------
..............................................................................CCCCATCACCGACCCCAG............................................................................................................................................................................................................................................ 180.500.00------------------------------------------------------------0.50----
..............................................................................CCCCATCACCGACCCCAGCG.......................................................................................................................................................................................................................................... 200.500.00-0.50---------------------------------------------------------------
......GTGGCGGCGCTGCAG....................................................................................................................................................................................................................................................................................................................... 1550.400.40---------------------------------------------------------------0.200.20
...............................................................................GGGGTCGGTGATGGG.............................................................................................................................................................................................................................................. 1540.250.25--------------------------------------------------------------0.25--