ID: uc010pht.1_intron_2_0_chr1_156811587_r
GENE: (19)
chr1:156811537-156811953-


(1)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(5)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(7)
OTHER 		(2)
SKIN

Sense strand
AGCAGCCCGCAACTGCATGGTGTCCCAGGACTTCACCGTCAAGATCGGGGGTACAGAGGGTGCCAGGCAGATGAGGGCGGCCTGAAAAGTAGAGAGACTCCCTTAAGCTAGGCATCAGGAGACCCACAGCCCTGGTCCTGACAGCCTGTGAGACCCTTGGCAAGTCACCCCCACCCTGTATCTTAGTCTCTTGTCCAAGGGCAGAGGGGTTTGGATGGGATGAGTTCTGAGGTCCATTGAGCCCCTACTTTCCAGGGTTCTTGGTGACTCTGGAGGATGAGAAGATTGGGAGAGGTATCCCAGGGGCAGGAGCTAGTGCGTGGCTCTTATGCCCCACACCTCCTCCACCCTCACCCTCACTTTCCAGACTTCGGGATGACTCGGGACGTGTATGAGACAGACTATTACCGCAAGGGT
..........................................................................................................................................................................................................................................................(((((((((......)))))))))...........((((((......)))))).(((....))).......................................................................................................
..........................................................................................................................................................................................................................................................251.................................................................319................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189783SRR189782SRR343336GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334SRR189784SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................................................................GGTTCTTGGTGACTCTGGATAA............................................................................................................................................22134.004.0020.0010.002.00----2.00-----------------
...............................................................................................................................................................................................................................................................GGTTCTTGGTGACTCTGGATA.............................................................................................................................................21131.004.0029.00------------1.001.00----------
...............................................................................................................................................................................................................................................................GGTTCTTGGTGACTCTGGAT..............................................................................................................................................20119.004.0019.00------------------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGATA.............................................................................................................................................20115.001.0015.00------------------------
..................................................................................................................................................................................................................................................................TCTTGGTGACTCTGGATAA............................................................................................................................................1914.000.007.005.00--1.00------1.00-------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGAT..............................................................................................................................................19110.001.0010.00------------------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGATAA............................................................................................................................................2117.001.004.00---2.00------1.00-------------
...............................................................................................................................................................................................................................................................GGTTCTTGGTGACTCTGGA...............................................................................................................................................1914.004.004.00------------------------
.................................................................................................................................................................................................................................................................TTCTTGGTGACTCTGGAT..............................................................................................................................................183.000.00---3.00---------------------
..................................................................................................................................................................................................................................................................TCTTGGTGACTCTGGATA.............................................................................................................................................183.000.003.00------------------------
...............................................................................................................................................................................................................................................................GGTTCTTGGTGACTCTGGATAAA...........................................................................................................................................2313.004.003.00------------------------
.................................................................................................................................................................................................................................................................TTCTTGGTGACTCTGGATAA............................................................................................................................................202.000.001.00---1.00--------------------
......................................................................................................................................................................................................................................................................................................................................................................ACTTTCCAGACTTCGGGATGACTCGGGACGTGTA.........................3412.002.00----------2.00--------------
.................................................................................................................................................................................................................................................................TTCTTGGTGACTCTGGATA.............................................................................................................................................191.000.001.00------------------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGATAAA...........................................................................................................................................2211.001.001.00------------------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGTT..............................................................................................................................................191.000.001.00------------------------
..........................................................................................................................................................................................................................................................................ACTCTGGAGGATGAGAAGATTGGG...............................................................................................................................2411.001.00------------------1.00------
........................................................................................................................................................................................................................................................................................................ATCCCAGGGGCAGGAGCTC......................................................................................................191.000.00------1.00------------------
.....................................................................................................................................................................................................................GATGGGATGAGTTCTTTTA.........................................................................................................................................................................................191.000.001.00------------------------
........................................................................................................................................................................................................GCAGAGGGGTTTGGAGTCA......................................................................................................................................................................................................191.000.00--1.00----------------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGATC.............................................................................................................................................2011.001.001.00------------------------
...................................................................................................................................CTGGTCCTGACAGCCTTG............................................................................................................................................................................................................................................................................181.000.00-----------------1.00-------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGCTA.............................................................................................................................................201.000.001.00------------------------
................................................................................................................................................................................................................................................................GTTCTTGGTGACTCTGGA...............................................................................................................................................1811.001.00---1.00---------------------
........................................................................................................................................................................................................GCAGAGGGGTTTGGACGA.......................................................................................................................................................................................................181.000.00--1.00----------------------
.............................................................................................................................................CAGCCTGTGAGACCCTTG..................................................................................................................................................................................................................................................................1820.500.50-----------------------0.50-

Antisense strand
AGCAGCCCGCAACTGCATGGTGTCCCAGGACTTCACCGTCAAGATCGGGGGTACAGAGGGTGCCAGGCAGATGAGGGCGGCCTGAAAAGTAGAGAGACTCCCTTAAGCTAGGCATCAGGAGACCCACAGCCCTGGTCCTGACAGCCTGTGAGACCCTTGGCAAGTCACCCCCACCCTGTATCTTAGTCTCTTGTCCAAGGGCAGAGGGGTTTGGATGGGATGAGTTCTGAGGTCCATTGAGCCCCTACTTTCCAGGGTTCTTGGTGACTCTGGAGGATGAGAAGATTGGGAGAGGTATCCCAGGGGCAGGAGCTAGTGCGTGGCTCTTATGCCCCACACCTCCTCCACCCTCACCCTCACTTTCCAGACTTCGGGATGACTCGGGACGTGTATGAGACAGACTATTACCGCAAGGGT
..........................................................................................................................................................................................................................................................(((((((((......)))))))))...........((((((......)))))).(((....))).......................................................................................................
..........................................................................................................................................................................................................................................................251.................................................................319................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189783SRR189782SRR343336GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334SRR189784SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................................................................................GGAGGATGAGAAGATTGTAG.............................................................................................................................. 201.000.00------------1.00------------
.............................................................................................................................................................................................................................................................................................................................................CCACACCTCCTCCACCCTCATGTA............................................................ 241.000.00--------1.00----------------
...............................................................................................................................................................................................................................................................................................................................................ACACCTCCTCCACCCTCATGTT............................................................ 221.000.00---------1.00---------------
..............................................................................................................................................................................................................................AGTTCTGAGGTCCATTGAGTGT............................................................................................................................................................................. 221.000.00-----1.00-------------------
.......................................................................................................................................................................................................................................................................................................................................TATGCCCCACACCTCCG......................................................................... 171.000.00--1.00----------------------
............................................................................................................................................................................................................................................................................................................................................CCCACACCTCCTCCACCCTCAT............................................................... 221.000.00--------1.00----------------
..............................................................................................................................................................................................................................AGTTCTGAGGTCCATTGATGTA............................................................................................................................................................................. 221.000.00-----1.00-------------------
.................................................................................................................................................................................................................................................................................................................................................ACCTCCTCCACCCTCAAGAG............................................................ 201.000.00--1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................CCTCACTTTCCAGACTCG............................................. 181.000.00---------------------1.00---
...............................................................................................................................................................................................................................................................................................................................................ACACCTCCTCCACCCTCATGG............................................................. 211.000.00---------1.00---------------
...............................................................................................................................................................................................................................................................................................................................................ACACCTCCTCCACCCTCAA............................................................... 191.000.00----------------1.00--------
........................................................................................................................................................................................................................................TCCATTGAGCCCCTACTTTCCAA.................................................................................................................................................................. 231.000.00-------------------1.00-----
..............................................................................................................................................................................................................................AGTTCTGAGGTCCATTGATTGA............................................................................................................................................................................. 221.000.00-----1.00-------------------
...............................................................................................................................................................................................................................................................................................................................................ACACCTCCTCCACCCTCATGGG............................................................ 221.000.00--------------------1.00----
..............................................................................................................................................................................................................................................................................................................................................CACACCTCCTCCACCCTCAATTA............................................................ 231.000.00---------------1.00---------
...................................................................................................................................................................GTCACCCCCACCCTGTCATG.......................................................................................................................................................................................................................................... 201.000.00------1.00------------------
.........................................................................................................................................................................................TGCCCTTGGACAAGAGAC...................................................................................................................................................................................................................... 1820.500.50----------------------0.50--
................................................................................................................................CTGTCAGGACCAGGGC................................................................................................................................................................................................................................................................................. 1660.170.17------------------------0.17