ID: uc010php.1_intron_4_0_chr1_156563883_f.5p
GENE: APOA1BP(5)
chr1:156563833-156564082+


(2)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(3)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCCACCCTACCCTGACACCGAGTGTGTCTATCGTCTGCAGTGAGGGAAGGTGGGTGGGTATTCTTCCCAATAAAGACTTAGAGCCCCTCTCTTCCAGAACTGTGGATTCCTGGGAGCTCCTCTGGCAATAAAAGTCAGTGAATGGTGGAAGTCAGAGACCAACCCTGGGGATTGGGTGCCATCTCTCTAGGGGTAACACAAAGGGCAAGAGGTTGCTATGGTATTTGGAAACAATGAAAATGGACTGTT
..........................................................................(((....(((((((.....((((......)))).....))).)))).)))..............................................................................................................................
................................................................65................................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925PAZD5SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)
.....................................................................AATAAAGACTTAGAGCCCCTCTC..............................................................................................................................................................2315.005.00-----4.00---------1.00--------------------------
.....................................................................AATAAAGACTTAGAGCCCC..................................................................................................................................................................1914.004.001.002.00----1.00-----------------------------------
......................................................................................................GTGGATTCCTGGGAGCTCCTCTGGC...........................................................................................................................2514.004.003.00-----1.00-----------------------------------
..................................................................CCCAATAAAGACTTAGAGCCCCTC................................................................................................................................................................2413.003.00---------3.00--------------------------------
..............................................................................TTAGAGCCCCTCTCTTCCAGAACTGTGG................................................................................................................................................2813.003.00---3.00--------------------------------------
.....................................................................AATAAAGACTTAGAGCCCCTCT...............................................................................................................................................................2212.002.00-2.00----------------------------------------
....................................................................CAATAAAGACTTAGAGCCC...................................................................................................................................................................1912.002.00-2.00----------------------------------------
.......................................................................TAAAGACTTAGAGCCCCT.................................................................................................................................................................1812.002.00----------2.00-------------------------------
......................................................................ATAAAGACTTAGAGCCCCTC................................................................................................................................................................2012.002.00----2.00-------------------------------------
.........................................................................AAGACTTAGAGCCCCTCTCTTCCA.........................................................................................................................................................2412.002.00--2.00---------------------------------------
....................GAGTGTGTCTATCGTCTGCAGTGAGG............................................................................................................................................................................................................2612.002.002.00-----------------------------------------
.............................................GGAAGGTGGGTGGGTATTCTCCCC.....................................................................................................................................................................................242.000.002.00-----------------------------------------
.................................................................................................................................................................................................................GAGGTTGCTATGGTATTTGGAAA..................2312.002.00----2.00-------------------------------------
..................................................................CCCAATAAAGACTTAGAGCC....................................................................................................................................................................2012.002.00--------2.00---------------------------------
.....................................................................AATAAAGACTTAGAGCCC...................................................................................................................................................................1812.002.00-2.00----------------------------------------
.........................................TGAGGGAAGGTGGGTGGGTAA............................................................................................................................................................................................212.000.00-------2.00----------------------------------
.............................................................................................................................................................................................................GCAAGAGGTTGCTATGGTATTTGGAA...................2611.001.00----------------------------------1.00-------
...................................................................CCAATAAAGACTTAGAGCCCCTC................................................................................................................................................................2311.001.00--------1.00---------------------------------
...............................TCGTCTGCAGTGAGGGAAGGT......................................................................................................................................................................................................2111.001.00-----------1.00------------------------------
...........................................AGGGAAGGTGGGTGGGTAATTT.........................................................................................................................................................................................221.000.00------------------------------1.00-----------
..............GACACCGAGTGTGTCTATCGT.......................................................................................................................................................................................................................2111.001.00----1.00-------------------------------------
......................................................................ATAAAGACTTAGAGCCCCTCT...............................................................................................................................................................2111.001.00---1.00--------------------------------------
....................................................................CAATAAAGACTTAGAGCCCCTCTCTTCC..........................................................................................................................................................2811.001.00--1.00---------------------------------------
......................GTGTGTCTATCGTCTGCAGTGAGGGAAGGTGGGTGG................................................................................................................................................................................................3611.001.001.00-----------------------------------------
................................................................................................................................ATAAAAGTCAGTGAATGGTGGAAGTCA...............................................................................................2711.001.001.00-----------------------------------------
......................................CAGTGAGGGAAGGTGGGTGGATA.............................................................................................................................................................................................231.000.00-----------1.00------------------------------
..............GACACCGAGTGTGTCTATCGTCT.....................................................................................................................................................................................................................2311.001.00--1.00---------------------------------------
...............................................................................................................................................TGGTGGAAGTCAGAGTGGC........................................................................................191.000.00-------------------1.00----------------------
..................................................................CCCAATAAAGACTTAGAGCCC...................................................................................................................................................................2111.001.00--------------------------------1.00---------
......................GTGTGTCTATCGTCTGCAGTGAGG............................................................................................................................................................................................................2411.001.001.00-----------------------------------------
.......................................................................TAAAGACTTAGAGCCCCTCT...............................................................................................................................................................2011.001.00---1.00--------------------------------------
......................................................................................................GTGGATTCCTGGGAGCTCCT................................................................................................................................2011.001.00------------------------1.00-----------------
...................................................................................................................................................................................................AACACAAAGGGCAAGAGG.....................................1811.001.00-----------------------------------1.00------
......................................................................................................................TCCTCTGGCAATAAAACTG.................................................................................................................191.000.00---------------------------1.00--------------
...........................................AGGGAAGGTGGGTGGG...............................................................................................................................................................................................1601.001.00---------------------1.00--------------------
........................................................................AAAGACTTAGAGCCCCTCTCTTCCAGAAC.....................................................................................................................................................2911.001.00-1.00----------------------------------------
...........................................................................................................................................TGAATGGTGGAAGTCAGAGAGCA........................................................................................231.000.00----1.00-------------------------------------
.................................................................................................GAACTGTGGATTCCTGG........................................................................................................................................1711.001.00----------------------1.00-------------------
................................................................................................................................................................................................................AGAGGTTGCTATGGTATTTGGAAACAA...............2711.001.00--1.00---------------------------------------
........................GTGTCTATCGTCTGCAGTGAGGGAAGGTGG....................................................................................................................................................................................................3011.001.001.00-----------------------------------------
.........................................................................AAGACTTAGAGCCCCTCTCTTCCAGAACTG...................................................................................................................................................3011.001.00--1.00---------------------------------------
........................GTGTCTATCGTCTGCAGTGAG.............................................................................................................................................................................................................2111.001.001.00-----------------------------------------
....................GAGTGTGTCTATCGTCTGCAG.................................................................................................................................................................................................................2111.001.00---------------------------------1.00--------
................................................................................................AGAACTGTGGATTCCTTCC.......................................................................................................................................191.000.00------------------1.00-----------------------
..........................................................................AGACTTAGAGCCCCTCT...............................................................................................................................................................1711.001.00--------------1.00---------------------------
......................................................................ATAAAGACTTAGAGCCCC..................................................................................................................................................................1811.001.00---1.00--------------------------------------
................................................................................................................................ATAAAAGTCAGTGAATGGTGGA....................................................................................................2211.001.00-----1.00------------------------------------
....................................................................CAATAAAGACTTAGAGCCCCTCTC..............................................................................................................................................................2411.001.00------1.00-----------------------------------
.......................................................................................................TGGATTCCTGGGAGCTCCTCTGGCA..........................................................................................................................2511.001.00------1.00-----------------------------------
...............................TCGTCTGCAGTGAGGGAAGGTGGGTGG................................................................................................................................................................................................2711.001.00-----------------1.00------------------------
.......................................................................TAAAGACTTAGAGCC....................................................................................................................................................................1520.500.50-0.50----------------------------------------
...........................................AGGGAAGGTGGGTGGGTATTCTTC.......................................................................................................................................................................................2420.500.50--0.50---------------------------------------
....................................TGCAGTGAGGGAAGGTGGG...................................................................................................................................................................................................1940.500.50---0.25-----------------------------------0.25--
........................................................................................TCTCTTCCAGAACTGTGGA...............................................................................................................................................1920.500.50---0.50--------------------------------------
........................................................................AAAGACTTAGAGCCC...................................................................................................................................................................1520.500.50------0.50-----------------------------------
..........................................................................AGACTTAGAGCCCCTC................................................................................................................................................................1620.500.50------------------------------------0.50-----
.........................................................................AAGACTTAGAGCCCCTC................................................................................................................................................................1720.500.50--------------0.50---------------------------
........................................GTGAGGGAAGGTGGGTGG................................................................................................................................................................................................1830.330.33-------------------------------------0.33----
.........................................TGAGGGAAGGTGGGTGGGTAT............................................................................................................................................................................................2130.330.33-------0.33----------------------------------
..........................................GAGGGAAGGTGGGTGGGTAT............................................................................................................................................................................................2030.330.33--0.33---------------------------------------
.........................................................................AAGACTTAGAGCCCC..................................................................................................................................................................1540.250.25--------------0.25---------------------------
.....................................................................................................TGTGGATTCCTGGGAG.....................................................................................................................................1650.200.20---------------0.20--------------------------
.................................................................................................................................................................AACCCTGGGGATTGG..........................................................................1580.120.12---------------0.12--------------------------
..........................................................................................TCTTCCAGAACTGTGG................................................................................................................................................1680.120.12-----------------------------------------0.12

Antisense strand
TGCCACCCTACCCTGACACCGAGTGTGTCTATCGTCTGCAGTGAGGGAAGGTGGGTGGGTATTCTTCCCAATAAAGACTTAGAGCCCCTCTCTTCCAGAACTGTGGATTCCTGGGAGCTCCTCTGGCAATAAAAGTCAGTGAATGGTGGAAGTCAGAGACCAACCCTGGGGATTGGGTGCCATCTCTCTAGGGGTAACACAAAGGGCAAGAGGTTGCTATGGTATTTGGAAACAATGAAAATGGACTGTT
..........................................................................(((....(((((((.....((((......)))).....))).)))).)))..............................................................................................................................
................................................................65................................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925PAZD5SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)
.................................................................................TTCTGGAAGAGAGGGGCTC...................................................................................................................................................... 1911.001.00----------------------------1.00-------------
...............................................................................................................................AATAAAAGTCAGTGAATTA........................................................................................................ 191.000.00-------------1.00----------------------------
.............................................................................................................CCTGGGAGCTCCTCTGCTAG......................................................................................................................... 201.000.00-------------------------1.00----------------
.........................CTCACTGCAGACGATAGACA............................................................................................................................................................................................................. 2011.001.00-------------------------------1.00----------
............................................................................................................................................................................TTGGGTGCCATCTCTCACC........................................................... 191.000.00------------1.00-----------------------------
..................................................................................................................................................................ACCCTGGGGATTGGGTGA...................................................................... 181.000.00------------1.00-----------------------------
.............................CCCTCACTGCAGACGATA........................................................................................................................................................................................................... 1811.001.00-------1.00----------------------------------
....................................................................................................................................................................................CATCTCTCTAGGGGTAA..................................................... 171.000.00--------------------1.00---------------------
..............................................................................TTCTGGAAGAGAGGGGCTCTAA...................................................................................................................................................... 2211.001.00-----------------------1.00------------------
................................................................................................................................ATAAAAGTCAGTGAACTTC....................................................................................................... 191.000.00-------------1.00----------------------------
.....................................................................................................TGTGGATTCCTGGGACCA................................................................................................................................... 181.000.00--------------------------1.00---------------
........................................................................................................................................................................................................AAAGGGCAAGAGGTTATAG............................... 191.000.00----------------1.00-------------------------
...............................................................................ACAGTTCTGGAAGAGAGGGGCTCTA.................................................................................................................................................. 2511.001.00-----------------------------1.00------------
.....................................................................................GTTCTGGAAGAGAGGG..................................................................................................................................................... 1630.330.33--------------------------------------0.33---
........................................................................................................................................................................................................................TTTCCAAATACCATAG.................. 1650.200.20----------------0.20-------------------------
............................................................................................................................................................CCCCAGGGTTGGTCT............................................................................... 1570.140.14----------------------------------------0.14-