ID: uc010pab.1_intron_3_0_chr1_148007091_r.3p
GENE: (4)
chr1:148007041-148007290-


(10)
B-CELL
(5)
BRAIN
(12)
BREAST
(21)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(11)
LIVER
(2)
OTHER
(1)
RRP40.ip
(17)
SKIN
(1)
TESTES
(2)
XRN.ip

Sense strand
GGGGATATTTCACCCTTGGTTCTGAGATGCAAACCAAAGAATATCATGACCAGCTTTCAGGCCTCCTGAAGTACATCTCTCACATTGTCCTGTTCTCATGCTGAGGAGCCTGAGATCCCTGTGTGGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGGAATTAAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCCCACCATGCCCC
...................................................................................................................(((((....)))))((((((((.((((..........((((((......)))))).......)))))))))))).............................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040010(GSM532895)
G529N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532888(GSM532888)
G761T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM532883(GSM532883)
G871N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR343337SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
............................................................................................................................GGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGTTT...............................................7915.000.00--15.00-----------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACCAAGA.............256.000.00-3.00-----------------------------------------1.00--------------------1.001.00--------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGATC........................205.000.00----5.00---------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GAAGAGGAAGAAGACCTGCT.............205.000.00--------------4.00-----------------------------------------------------------------------1.00-----
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGAC............295.000.005.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACCATC..............284.000.00----4.00---------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAT........................254.000.00-4.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAT.....................244.000.00--------------------4.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGT...................264.000.00-2.00---1.00------------------------------------------------------1.00-------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGT......................234.000.004.00-------------------------------------------------------------------------------------------
.........................................................................................................................TGTGGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGA.................................................803.000.00--------------------------3.00-----------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGATT.......................253.000.00-----2.00--1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGATA.................243.000.001.00--1.00--1.00-------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGATT.......................263.000.00-3.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GAAGAGGAAGAAGACCAAGGTTT..........232.000.00--------------------------------------------2.00-----------------------------------------------
.........................................................................................................................................TGGACTGTTATGGGTGTAGGTGAATTCTG....................................................................................292.000.00------------------2.00-------------------------------------------------------------------------
......................................................................................................................................CAGTGGACTGTTATGGGTGTAGGTGAATTCTG....................................................................................322.000.00---------------2.00----------------------------------------------------------------------------
........................................................................................................................GTGTGGGGATTAGACAGTGGAA............................................................................................................222.000.00-------2.00------------------------------------------------------------------------------------
..................................................................................................................................................................................TCCCTGTCTGAATGTATTGCAGA.................................................232.000.00-----1.00----------------------------1.00---------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTTACGG....................................................................................................272.000.00------------------------------2.00-------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGATTT......................262.000.00------------1.00-------------------------------------------------------1.00-----------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGATC........................242.000.00----2.00---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGAA..................262.000.00------2.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGATT.......................222.000.00-1.00-------1.00----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................AGAGGAAGAAGACCAAGGCCCCCCA......252.000.002.00-------------------------------------------------------------------------------------------
...............................................................................................................GAGATCCCTGTGTGGGGATTAGACAGTAGA.............................................................................................................302.000.00------------------1.00----------------1.00--------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGATA.................282.000.00---1.00---------------1.00------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGTA.....................242.000.00-1.00-----------1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGAT.....................272.000.00--------1.00-------1.00---------------------------------------------------------------------------
..............................................................................................................................................TGTTATGGGTGTAGGTGAATTTGCT...................................................................................252.000.00------------------------1.00----------------1.00--------------------------------------------------
......................................................................................................................................................................................................................CAAGAAGAGGAAGAAGACCAAGACC...........252.000.00-------2.00------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAATA...................232.000.00---1.00--1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGACCAAGACC...........332.000.00-----------1.00------------------------1.00-------------------------------------------------------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACCAAGGCA...........232.000.00---------1.00--1.00-------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGTT..................202.000.00-----2.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGT...................192.000.00--------1.00----------------------------------------------1.00------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGACC...........342.000.00---------------------1.00-------1.00--------------------------------------------------------------
...........................................................................................................................................GACTGTTATGGGTGTAGGG............................................................................................192.000.00-------------1.00---------------------------1.00--------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGTGTAGGTGT..........................................................................................252.000.00-------2.00------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAAA.............282.000.00----------------------------------------------------------------------1.00------------1.00--------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGACCAAGA.............242.000.00----------------------------1.00----------1.00----------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGACAT......................202.000.00-----------------------------------------------1.00---------------------1.00----------------------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGGCCGA.........202.000.002.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGGTT...........341.000.00-------------------------------------------------------------------------------1.00------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGGCCAAAA.......341.000.00---------------------------------------------1.00----------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGACA.................261.000.00---------------------------1.00----------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGAAGACA.................321.000.00------------------------------------1.00-------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAATAA..................271.000.00-------------------------------------1.00------------------------------------------------------
...........................................................................................................................................................................TTGTCTGTCCCTGTCTGAATGTATTGCAAA.................................................301.000.00---------------------------1.00----------------------------------------------------------------
.................................................................................................ATGCTGAGGAGCCTGAGATCCCCG.................................................................................................................................241.000.00----------------------------------------1.00---------------------------------------------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGAGGAAGAAGACCAAGAC............341.000.00------------------1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGGT............331.000.00-----1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGATC.................201.000.00-----------------------------------------------------------------------1.00--------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGACCAAGA.............311.000.00----------------------------------1.00---------------------------------------------------------
..........................................................................................................................................................................................................................AAGAGGAAGAAGACCAAGGCCCACCATGCAA.311.000.00--------1.00-----------------------------------------------------------------------------------
........................................................................................................................................GTGGACTGTTATGGGTGTATG.............................................................................................211.000.00--------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGGCCCACCC......231.000.001.00-------------------------------------------------------------------------------------------
..................................................................................................................................................ATGGGTGTAGGTGAATTGGTTTA.................................................................................231.000.00-------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGGCAC..........311.000.00-----------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................TCTGTCCCTGTCTGAATGTATTGCAGGCTTC.............................................311.000.00------------------------------1.00-------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGTGTAGGGG...........................................................................................241.000.00---1.00----------------------------------------------------------------------------------------
...............................................................................................................................................GTTATGGGTGTAGGTGAATTGGGT...................................................................................241.000.00------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGATTT......................271.000.00--------1.00-----------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGATT....................221.000.001.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACAAAA..............271.000.00---------------------1.00----------------------------------------------------------------------
....................................................................................................................CCCTGTGTGGGGATTAGAGAGT................................................................................................................221.000.00------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................TGGGTGTAGGTGAATTGGAAA..................................................................................211.000.00--------------------------------------1.00-----------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAAC.................241.000.001.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACCAAGGCCA..........241.000.001.00-------------------------------------------------------------------------------------------
................................................................................CACATTGTCCTGTTCTCATA......................................................................................................................................................201.000.00----------------------------------------------1.00---------------------------------------------
........................................................................................................................................................................ATTTTGTCTGTCCCTGTCTGAATGTATTTCAG..................................................321.000.00---------------------------------------------------------------------------1.00----------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGT............................181.000.00-------------------------1.00------------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGTGTAGGGGAA.........................................................................................261.000.00------1.00-------------------------------------------------------------------------------------
.......................................................................................................AGGAGCCTGAGATCCCTGTGTGGGGAC........................................................................................................................271.000.00-----------------1.00--------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACCAAGACC...........271.000.00----------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGTT.....................281.000.00-------------------------------------1.00------------------------------------------------------
.....................................................................................................................................................................................CTGTCTGAATGTATTGCAA..................................................191.000.00-------------------------------1.00------------------------------------------------------------
...................................................................................................................................................TGGGTGTAGGTGAATTGGCATA.................................................................................221.000.00------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAGGAA.....................221.000.00---------------------------------------------------1.00----------------------------------------
...................................................................................................................................................................................CCCTGTCTGAATGTATTGCAGA.................................................221.000.00-----------------------------------------------------------1.00--------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGACCAAGACCC..........341.000.00-----------------------------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGAAGACT.................311.000.00-----1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGGGCCA.........201.000.001.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAC...............261.000.00-----------------------------------------------------1.00--------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAT........................211.000.00-------------------------------------------------------------------1.00------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACCAAGT.............291.000.00-----------1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGATA.................261.000.001.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGTCCT..........191.000.001.00-------------------------------------------------------------------------------------------
..................................................................................................................................TAGACAGTGGACTGTTATGGGGGTA...............................................................................................251.000.00----------------------------1.00---------------------------------------------------------------
.......................................................................................................................................................................TATTTTGTCTGTCCCTGTCGAA.............................................................221.000.00---------------------------------------------------------------------------------1.00----------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAAAA................251.000.001.00-------------------------------------------------------------------------------------------
................................................................................................................................................TTATGGGTGTAGGTGAATTGAC....................................................................................221.000.00---------------------------------------1.00----------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACA.................251.000.00-----1.00--------------------------------------------------------------------------------------
............................................................................................................................GGGGATTAGACAGTGGACTGTTATGGGCGTA...............................................................................................311.000.00-----------------------1.00--------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGT......................221.000.00------------1.00-------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGATT.......................181.000.00---------1.00----------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGTT..................271.000.00-----1.00--------------------------------------------------------------------------------------
..............................................................................................................................GGATTAGACAGTGGACTGTTACGGG...................................................................................................251.000.00-----------1.00--------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAAGAA...............261.000.001.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGATC.................281.000.00------1.00-------------------------------------------------------------------------------------
.........................................................................................................................TGTGGGGATTAGACAGTGGACCG..........................................................................................................231.000.00-----------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACATC...............261.000.00----1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGACC...........301.000.00----------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGAA..................271.000.00----------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCAAGAAGAGGAAGAAGATG.................201.000.00----------------------------1.00---------------------------------------------------------------
...........................................................................................................................................GACTGTTATGGGTGTAGGTGAATTGGCTTCTT...............................................................................321.000.00-----------------------1.00--------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGAAGAT..................301.000.00----------------1.00---------------------------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTTATT.....................................................................................................261.000.00------------------------------------------1.00-------------------------------------------------
...........................................................................................................................................................................................GAATGTATTGCAGGAATTAAAAAAA......................................251.000.00------------------------------------------------1.00-------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGATA....................221.000.00-1.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAA....................251.000.00----------------------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGT...................241.000.00--------------------------------1.00-----------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGACCG................271.000.00---------1.00----------------------------------------------------------------------------------
...................................................................................................................................................................................CCCTGTCTGAATGTATTGCAGAA................................................231.000.00-------------------------------------------------1.00------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGATA....................231.000.00-------------------1.00------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGT...................251.000.00------1.00-------------------------------------------------------------------------------------
.........................................................................................................................................TGGACTGTTATGGGTGGAGG.............................................................................................201.000.00-------------------------1.00------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGACCAAAAAA...........331.000.00---------------------1.00----------------------------------------------------------------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGGGG..........................201.000.00---1.00----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GAGGAAGAAGACCAAGGCCA..........201.000.00---1.00----------------------------------------------------------------------------------------
.....................................................................................................TGAGGAGCCTGAGATCCGACG................................................................................................................................211.000.00---------------------------------1.00----------------------------------------------------------
..................................................................................................................................................................................................................GGACCAAGAAGAGGAAGAAGACAA................241.000.001.00-------------------------------------------------------------------------------------------
............................................................................................................................GGGGATTAGACAGTGGACTGTTATGGGGGCA...............................................................................................311.000.00-----------------------1.00--------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGA.............281.000.001.00-------------------------------------------------------------------------------------------
...................................................................................................................................AGACAGTGGACTGTTACGGG...................................................................................................201.000.00-----------------------------------1.00--------------------------------------------------------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGGCGCG.........201.000.001.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAATT...................261.000.00-------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACA.................241.000.001.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAGAGGAAGGG.....................261.000.001.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAACA................251.000.001.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGACCAATG.............301.000.00---------------1.00----------------------------------------------------------------------------
....................................................................................................................................GACAGTGGACTGTTATGGGTGTAGAAA...........................................................................................271.000.00--------------------------------------------------------------------------1.00-----------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGAA..................251.000.001.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAAA...................231.000.00-1.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAA....................211.000.00--------------------------------------1.00-----------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAT........................241.000.00---------------------------------1.00----------------------------------------------------------
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAGAGGAAGAAGACCAAGA.............341.000.00-------------------------------------------------------------1.00------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACT.................251.000.00---------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGATT.......................211.000.00---1.00----------------------------------------------------------------------------------------
........................................................................................................................................GTGGACTGTTATGGGTGC................................................................................................181.000.00-------------1.00------------------------------------------------------------------------------
...............................................................................................................................................GTTATGGGTGTAGGTGAATTGGA....................................................................................231.000.00-------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGATT.......................191.000.00-------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGAA............291.000.001.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................AGAGGAAGAAGACCAAGGT............191.000.00----------------------1.00---------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAACA...................191.000.00---------------------------------------------------------1.00----------------------------------
........................................................................................................................................GTGGACTGTTATGGGTGA................................................................................................181.000.00------------------------------------------------------------------------------------1.00-------
.............................................ATGACCAGCTTTCAGGCCCCTG.......................................................................................................................................................................................221.000.00-----------------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGAAC.................261.000.00---1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCT...........341.000.00---------------------------1.00----------------------------------------------------------------
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAGAGGAAGAAGAG..................291.000.001.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGT......................271.000.00--------------------------------1.00-----------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACCAAGGT............261.000.00--------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACAA................251.000.001.00-------------------------------------------------------------------------------------------
.............................................................................................................................GGGATTAGACAGTGGACTGTTATGGGTGTAGGAAAA.........................................................................................361.000.00----------------------------------------------------------------------------1.00---------------
....................................................................................................................................GACAGTGGACTGTTACGG....................................................................................................181.000.00------------------------------------------------------------------------------1.00-------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGA.............321.000.00---------------------------------------------------------------------------------------1.00----
...........................................................................................................................................................................................................TTAAAAAGGACCAAGAAAA............................191.000.00----------------------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGATCA................281.000.00---1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGAC............331.000.00--------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGATT....................211.000.00---------1.00----------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGTTT....................251.000.00-----1.00--------------------------------------------------------------------------------------
............CCCTTGGTTCTGAGAAA.............................................................................................................................................................................................................................171.000.00-------------------------------------------------------------------------1.00------------------
......................................................................................................................................................................................TGTCTGAATGTATTGTAG..................................................181.000.00--------------------------------------------------1.00-----------------------------------------
.................................................................................................................................TTAGACAGTGGACTGTTACGGG...................................................................................................221.000.00----------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGATCA................261.000.001.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................ATTAAAAAGGACCAAGAAGAGGAAGATTT...................291.000.00----------------1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................AATTAAAAAGGACCAAGAAGAGGAAGAT.....................281.000.00----------------------1.00---------------------------------------------------------------------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACCAAGGGC...........231.000.00---1.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................CTGTCCCTGTCTGAATGTATTGA....................................................231.000.00---------------------------------------------------------------1.00----------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCA...........341.000.00------------------------------------------------------1.00-------------------------------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGAGGAAGAAGACCAAGA.............331.000.00-----------------------------1.00--------------------------------------------------------------
......................................................................................................................................CAGTGGACTGTTATGGTG..................................................................................................181.000.00---------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGAGCA................251.000.001.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AAGAGGAAGAAGACCAAGGCCCATA.......251.000.00---1.00----------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAC....................221.000.00--------------------------------------------------------------1.00-----------------------------
............................................................................................................................................................................................................TAAAAAGGACCAAGAAGAGGAAGAAGT...................271.000.00-----1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AGAAGAGGAAGAAGACCAAGGCAA..........241.000.00-1.00------------------------------------------------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTC........................................................................................................231.000.00-----------------1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGAAGAATA...................261.000.00-1.00------------------------------------------------------------------------------------------
......................TGAGATGCAAACCAAAGAATATA.............................................................................................................................................................................................................231.000.00---1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGATC.................241.000.00------1.00-------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCAAGAAGAGGAAGAAGACCAAGGCCCACCATGT...351.000.00-----------------------------------------------------------------------------1.00--------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGCTA.......................................................................................................241.000.00----------------------------------------1.00---------------------------------------------------
...............................................................................................................................................................................CTGTCCCTGTCTGAAAAAA........................................................191.000.00------------------------------------------------------------------------1.00-------------------
.................................................................................................................................................................................................................AGGACCAAGAAGAGGAAGAAGACCAAGGT............291.000.00---1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAAAGGACCAAGAAGAGGC.........................201.000.00-----------------------------------------------------------------------------------------1.00--
.....................................................................................................................................ACAGTGGACTGTTATGGGTGTAGAA............................................................................................251.000.00-------------------------------1.00------------------------------------------------------------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGGCTCAC........211.000.00------------------------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................GAATTAAAAAGGACCAAGAAA.............................211.000.00----------------------------------------------------1.00---------------------------------------
...............................................................................................................................................................................................................AAAGGACCAAGAAGAGGAAGAAGACCAAGA.............301.000.00----------1.00---------------------------------------------------------------------------------
.........................................................................................................................................TGGACTGTTATGGGTGTAGGC............................................................................................211.000.00-------------------------------------------1.00------------------------------------------------
...........................................................................................................................TGGGGATTAGACAGTGGACTGTTATGAAA..................................................................................................291.000.00-------------------------1.00------------------------------------------------------------------
..............................................................................................................................................................................................................AAAAGGACCAAGAAGAGGAAGAAGACCAAGAC............321.000.00-----------1.00--------------------------------------------------------------------------------
.......................................................................................................................................AGTGGACTGTTATGGGC..................................................................................................171.000.00----------------------------------------------------------------------------------1.00---------
..................................................................................................................................................................................................................GGACCAAGAAGAGGAAGAAGACCAAGAC............281.000.00------------------------------------------------------------------1.00-------------------------
................................................................................................................................................................................................................AAGGACCAAGAAGAGGAAGAAGACCAAAA.............291.000.00------------------------------------------1.00-------------------------------------------------
....................................................................................................................................................GGGTGTAGGTGAATTTTT....................................................................................181.000.00----------------------------------------------------------------------------------------1.00---
.............................................................................................................................................................................GTCTGTCCCTGTCTGAATGTATTTCAG..................................................271.000.00-------------------------------------------------------------------------------------1.00------
.............................................................................................................................................................................................................................AGGAAGAAGACCAAGGCCCACCATGTT..271.000.00----------1.00---------------------------------------------------------------------------------
..........................................................AGGCCTCCTGAAGTACAT..............................................................................................................................................................................1820.500.50------------------------------------------------------------------------------------------0.50-

Antisense strand
GGGGATATTTCACCCTTGGTTCTGAGATGCAAACCAAAGAATATCATGACCAGCTTTCAGGCCTCCTGAAGTACATCTCTCACATTGTCCTGTTCTCATGCTGAGGAGCCTGAGATCCCTGTGTGGGGATTAGACAGTGGACTGTTATGGGTGTAGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGGAATTAAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCCCACCATGCCCC
...................................................................................................................(((((....)))))((((((((.((((..........((((((......)))))).......)))))))))))).............................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577740(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040010(GSM532895)
G529N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532888(GSM532888)
G761T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM532883(GSM532883)
G871N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR343337SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..................GTTCTGAGATGCAAACTCTG.................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------------------------------1.00-----------
....................................................................TGAGAACAGGACAATGTGAGAGATGTACTT........................................................................................................................................................ 3020.500.50----------0.50---------------------------------------------------------------------------------
........................................................GATGTACTTCAGGAGGCCTGA............................................................................................................................................................................. 2120.500.50-------------------------------------------------------------------------------------------0.50